data_1F6H # _model_server_result.job_id q6omnb8W39FxXYiH5hPDAg _model_server_result.datetime_utc '2024-12-26 17:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":230}' # _entry.id 1F6H # _exptl.entry_id 1F6H _exptl.method 'POWDER DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.834 _cell.angle_gamma 90 _cell.entry_id 1F6H _cell.length_a 64.4113 _cell.length_b 30.1946 _cell.length_c 34.9476 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE HEM . A HEM 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc2 B FE HEM . A HEM 230 1_555 C O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1F6H _atom_sites.fract_transf_matrix[1][1] 0.015525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004403 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 230 230 HEM HEM . C 3 HOH A 1 231 230 HOH HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 16.236 30.495 4.824 1 12.98 ? CHA HEM 230 A 1 HETATM 2 C CHB HEM . . . B 2 13.974 27.473 7.839 1 12.98 ? CHB HEM 230 A 1 HETATM 3 C CHC HEM . . . B 2 13.638 24.208 4.273 1 12.98 ? CHC HEM 230 A 1 HETATM 4 C CHD HEM . . . B 2 15.893 27.244 1.272 1 12.98 ? CHD HEM 230 A 1 HETATM 5 C C1A HEM . . . B 2 15.637 29.979 5.953 1 12.98 ? C1A HEM 230 A 1 HETATM 6 C C2A HEM . . . B 2 15.512 30.64 7.242 1 12.98 ? C2A HEM 230 A 1 HETATM 7 C C3A HEM . . . B 2 14.891 29.801 8.067 1 12.98 ? C3A HEM 230 A 1 HETATM 8 C C4A HEM . . . B 2 14.602 28.59 7.326 1 12.98 ? C4A HEM 230 A 1 HETATM 9 C CMA HEM . . . B 2 14.488 29.967 9.546 1 12.98 ? CMA HEM 230 A 1 HETATM 10 C CAA HEM . . . B 2 16.03 32.078 7.469 1 12.98 ? CAA HEM 230 A 1 HETATM 11 C CBA HEM . . . B 2 15.082 33.261 7.418 1 12.98 ? CBA HEM 230 A 1 HETATM 12 C CGA HEM . . . B 2 15.094 34.271 6.309 1 12.98 ? CGA HEM 230 A 1 HETATM 13 O O1A HEM . . . B 2 14.02 34.361 5.644 1 12.98 ? O1A HEM 230 A 1 HETATM 14 O O2A HEM . . . B 2 16.101 35.009 6.101 1 12.98 ? O2A HEM 230 A 1 HETATM 15 C C1B HEM . . . B 2 13.702 26.323 7.125 1 12.98 ? C1B HEM 230 A 1 HETATM 16 C C2B HEM . . . B 2 13.039 25.148 7.658 1 12.98 ? C2B HEM 230 A 1 HETATM 17 C C3B HEM . . . B 2 12.948 24.25 6.674 1 12.98 ? C3B HEM 230 A 1 HETATM 18 C C4B HEM . . . B 2 13.553 24.842 5.492 1 12.98 ? C4B HEM 230 A 1 HETATM 19 C CMB HEM . . . B 2 12.587 25.062 9.134 1 12.98 ? CMB HEM 230 A 1 HETATM 20 C CAB HEM . . . B 2 12.837 22.706 6.764 1 12.98 ? CAB HEM 230 A 1 HETATM 21 C CBB HEM . . . B 2 13.281 22.075 7.854 1 12.98 ? CBB HEM 230 A 1 HETATM 22 C C1C HEM . . . B 2 14.208 24.748 3.143 1 12.98 ? C1C HEM 230 A 1 HETATM 23 C C2C HEM . . . B 2 14.299 24.085 1.864 1 12.98 ? C2C HEM 230 A 1 HETATM 24 C C3C HEM . . . B 2 14.923 24.919 1.027 1 12.98 ? C3C HEM 230 A 1 HETATM 25 C C4C HEM . . . B 2 15.243 26.129 1.75 1 12.98 ? C4C HEM 230 A 1 HETATM 26 C CMC HEM . . . B 2 13.75 22.673 1.581 1 12.98 ? CMC HEM 230 A 1 HETATM 27 C CAC HEM . . . B 2 15.017 24.754 -0.504 1 12.98 ? CAC HEM 230 A 1 HETATM 28 C CBC HEM . . . B 2 15.846 25.533 -1.2 1 12.98 ? CBC HEM 230 A 1 HETATM 29 C C1D HEM . . . B 2 16.211 28.398 1.959 1 12.98 ? C1D HEM 230 A 1 HETATM 30 C C2D HEM . . . B 2 16.907 29.562 1.444 1 12.98 ? C2D HEM 230 A 1 HETATM 31 C C3D HEM . . . B 2 17.014 30.474 2.422 1 12.98 ? C3D HEM 230 A 1 HETATM 32 C C4D HEM . . . B 2 16.377 29.904 3.591 1 12.98 ? C4D HEM 230 A 1 HETATM 33 C CMD HEM . . . B 2 17.437 29.648 -0.005 1 12.98 ? CMD HEM 230 A 1 HETATM 34 C CAD HEM . . . B 2 17.683 31.863 2.39 1 12.98 ? CAD HEM 230 A 1 HETATM 35 C CBD HEM . . . B 2 18.899 32.223 3.219 1 12.98 ? CBD HEM 230 A 1 HETATM 36 C CGD HEM . . . B 2 19.225 33.673 3.458 1 12.98 ? CGD HEM 230 A 1 HETATM 37 O O1D HEM . . . B 2 19.708 34.349 2.51 1 12.98 ? O1D HEM 230 A 1 HETATM 38 O O2D HEM . . . B 2 19.015 34.16 4.606 1 12.98 ? O2D HEM 230 A 1 HETATM 39 N NA HEM . . . B 2 15.069 28.725 6.029 1 12.98 ? NA HEM 230 A 1 HETATM 40 N NB HEM . . . B 2 14.012 26.107 5.79 1 12.98 ? NB HEM 230 A 1 HETATM 41 N NC HEM . . . B 2 14.792 25.995 3.048 1 12.98 ? NC HEM 230 A 1 HETATM 42 N ND HEM . . . B 2 15.906 28.647 3.279 1 12.98 ? ND HEM 230 A 1 HETATM 43 FE FE HEM . . . B 2 14.966 27.375 4.512 1 12.98 ? FE HEM 230 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #