data_1F7N # _model_server_result.job_id 1xt1ZmjLmPq3e-9OO6o5-w _model_server_result.datetime_utc '2024-12-26 12:39:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":138}' # _entry.id 1F7N # _exptl.entry_id 1F7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1F7N _cell.length_a 79.13 _cell.length_b 79.13 _cell.length_c 87.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PQS trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1,2,3 B,F,G,I 2 1 B,F,G,I 3 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 39.565 68.52859 0 5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -39.565 68.52859 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 64 A ASP 64 1_555 C MG MG . A MG 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A OD1 ASP 64 A ASP 64 2_555 C MG MG . A MG 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD1 ASP 64 A ASP 64 3_555 C MG MG . A MG 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 C MG MG . A MG 137 1_555 H O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 C MG MG . A MG 137 1_555 H O HOH . A HOH 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc6 C MG MG . A MG 137 1_555 H O HOH . A HOH 404 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc7 D MG MG . A MG 138 1_555 H O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc8 D MG MG . A MG 138 1_555 H O HOH . A HOH 404 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc9 D MG MG . A MG 138 1_555 H O HOH . A HOH 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc10 D MG MG . A MG 138 1_555 H O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc11 D MG MG . A MG 138 1_555 H O HOH . A HOH 412 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc12 D MG MG . A MG 138 1_555 H O HOH . A HOH 412 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc13 F MG MG . B MG 120 1_555 B OD1 ASP 64 B ASP 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc14 F MG MG . B MG 120 1_555 B OD1 ASP 64 B ASP 264 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc15 F MG MG . B MG 120 1_555 B OD1 ASP 64 B ASP 264 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1F7N _atom_sites.fract_transf_matrix[1][1] 0.012637 _atom_sites.fract_transf_matrix[1][2] 0.007296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 137 1 MG MG . D 2 MG A 1 138 3 MG MG . E 3 UMP A 1 139 118 UMP UMP . F 2 MG B 1 120 2 MG MG . G 3 UMP B 1 337 318 UMP UMP . H 4 HOH A 1 401 401 HOH H2O . H 4 HOH A 2 402 402 HOH H2O . H 4 HOH A 3 403 403 HOH H2O . H 4 HOH A 4 404 404 HOH H2O . H 4 HOH A 5 405 405 HOH H2O . H 4 HOH A 6 406 406 HOH H2O . H 4 HOH A 7 407 407 HOH H2O . H 4 HOH A 8 408 408 HOH H2O . H 4 HOH A 9 409 409 HOH H2O . H 4 HOH A 10 410 410 HOH H2O . H 4 HOH A 11 411 411 HOH H2O . H 4 HOH A 12 412 412 HOH H2O . H 4 HOH A 13 413 413 HOH H2O . H 4 HOH A 14 414 417 HOH H2O . H 4 HOH A 15 415 418 HOH H2O . H 4 HOH A 16 416 419 HOH H2O . H 4 HOH A 17 417 420 HOH H2O . H 4 HOH A 18 418 421 HOH H2O . H 4 HOH A 19 419 423 HOH H2O . H 4 HOH A 20 420 424 HOH H2O . H 4 HOH A 21 421 425 HOH H2O . H 4 HOH A 22 422 427 HOH H2O . H 4 HOH A 23 423 428 HOH H2O . H 4 HOH A 24 424 429 HOH H2O . H 4 HOH A 25 425 430 HOH H2O . H 4 HOH A 26 426 431 HOH H2O . H 4 HOH A 27 427 433 HOH H2O . H 4 HOH A 28 428 434 HOH H2O . H 4 HOH A 29 429 435 HOH H2O . H 4 HOH A 30 430 436 HOH H2O . H 4 HOH A 31 431 437 HOH H2O . H 4 HOH A 32 432 439 HOH H2O . H 4 HOH A 33 433 440 HOH H2O . H 4 HOH A 34 434 443 HOH H2O . H 4 HOH A 35 435 444 HOH H2O . H 4 HOH A 36 436 446 HOH H2O . H 4 HOH A 37 437 447 HOH H2O . H 4 HOH A 38 438 448 HOH H2O . H 4 HOH A 39 439 449 HOH H2O . H 4 HOH A 40 440 450 HOH H2O . H 4 HOH A 41 441 451 HOH H2O . H 4 HOH A 42 442 452 HOH H2O . H 4 HOH A 43 443 453 HOH H2O . H 4 HOH A 44 444 454 HOH H2O . H 4 HOH A 45 445 460 HOH H2O . H 4 HOH A 46 446 461 HOH H2O . H 4 HOH A 47 447 462 HOH H2O . H 4 HOH A 48 448 465 HOH H2O . H 4 HOH A 49 449 466 HOH H2O . H 4 HOH A 50 450 468 HOH H2O . H 4 HOH A 51 451 471 HOH H2O . H 4 HOH A 52 452 472 HOH H2O . H 4 HOH A 53 453 473 HOH H2O . H 4 HOH A 54 454 474 HOH H2O . H 4 HOH A 55 455 475 HOH H2O . H 4 HOH A 56 456 476 HOH H2O . H 4 HOH A 57 457 477 HOH H2O . H 4 HOH A 58 458 1 HOH H2O . H 4 HOH A 59 459 2 HOH H2O . I 4 HOH B 1 414 414 HOH H2O . I 4 HOH B 2 415 415 HOH H2O . I 4 HOH B 3 416 416 HOH H2O . I 4 HOH B 4 422 422 HOH H2O . I 4 HOH B 5 426 426 HOH H2O . I 4 HOH B 6 432 432 HOH H2O . I 4 HOH B 7 438 438 HOH H2O . I 4 HOH B 8 441 441 HOH H2O . I 4 HOH B 9 442 442 HOH H2O . I 4 HOH B 10 445 445 HOH H2O . I 4 HOH B 11 455 455 HOH H2O . I 4 HOH B 12 456 456 HOH H2O . I 4 HOH B 13 457 457 HOH H2O . I 4 HOH B 14 458 458 HOH H2O . I 4 HOH B 15 459 459 HOH H2O . I 4 HOH B 16 463 463 HOH H2O . I 4 HOH B 17 464 464 HOH H2O . I 4 HOH B 18 467 467 HOH H2O . I 4 HOH B 19 469 469 HOH H2O . I 4 HOH B 20 470 470 HOH H2O . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z 25.079 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 31.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 138 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #