data_1F7Q # _model_server_result.job_id XWy-74wnPjSO5oo8AnjdoQ _model_server_result.datetime_utc '2024-12-27 03:17:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 1F7Q # _exptl.entry_id 1F7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "DEOXYURIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F7Q _cell.length_a 68.35 _cell.length_b 71.65 _cell.length_c 76.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C9 H15 N2 O14 P3' _chem_comp.formula_weight 468.142 _chem_comp.id DUT _chem_comp.mon_nstd_flag . _chem_comp.name "DEOXYURIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DUT sing 83 n n N1 C6 DUT sing 84 n n N1 C1' DUT sing 85 n n C2 N3 DUT sing 86 n n C2 O2 DUT doub 87 n n N3 C4 DUT sing 88 n n N3 HN3 DUT sing 89 n n C4 C5 DUT sing 90 n n C4 O4 DUT doub 91 n n C5 C6 DUT doub 92 n n C5 H5 DUT sing 93 n n C6 H6 DUT sing 94 n n C1' C2' DUT sing 95 n n C1' O4' DUT sing 96 n n C1' H1' DUT sing 97 n n C2' C3' DUT sing 98 n n C2' "H2'1" DUT sing 99 n n C2' "H2'2" DUT sing 100 n n C3' C4' DUT sing 101 n n C3' O3' DUT sing 102 n n C3' H3' DUT sing 103 n n C4' O4' DUT sing 104 n n C4' C5' DUT sing 105 n n C4' H4' DUT sing 106 n n O3' HO3' DUT sing 107 n n C5' O5' DUT sing 108 n n C5' "H5'1" DUT sing 109 n n C5' "H5'2" DUT sing 110 n n O5' PA DUT sing 111 n n PA O1A DUT doub 112 n n PA O2A DUT sing 113 n n PA O3A DUT sing 114 n n O2A HOA2 DUT sing 115 n n O3A PB DUT sing 116 n n PB O1B DUT doub 117 n n PB O2B DUT sing 118 n n PB O3B DUT sing 119 n n O2B HOB2 DUT sing 120 n n O3B PG DUT sing 121 n n PG O1G DUT doub 122 n n PG O2G DUT sing 123 n n PG O3G DUT sing 124 n n O2G HOG2 DUT sing 125 n n O3G HOG3 DUT sing 126 n n # _atom_sites.entry_id 1F7Q _atom_sites.fract_transf_matrix[1][1] 0.014631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DUT A 1 802 802 DUT UTP . E 2 DUT C 1 801 801 DUT UTP . F 3 HOH A 1 601 601 HOH TIP . F 3 HOH A 2 604 604 HOH TIP . F 3 HOH A 3 606 606 HOH TIP . F 3 HOH A 4 607 607 HOH TIP . F 3 HOH A 5 608 608 HOH TIP . F 3 HOH A 6 612 612 HOH TIP . F 3 HOH A 7 615 615 HOH TIP . F 3 HOH A 8 618 618 HOH TIP . F 3 HOH A 9 619 619 HOH TIP . F 3 HOH A 10 622 622 HOH TIP . F 3 HOH A 11 623 623 HOH TIP . F 3 HOH A 12 625 625 HOH TIP . F 3 HOH A 13 631 631 HOH TIP . F 3 HOH A 14 632 632 HOH TIP . F 3 HOH A 15 633 633 HOH TIP . F 3 HOH A 16 634 634 HOH TIP . F 3 HOH A 17 636 636 HOH TIP . F 3 HOH A 18 637 637 HOH TIP . F 3 HOH A 19 638 638 HOH TIP . F 3 HOH A 20 639 639 HOH TIP . F 3 HOH A 21 641 641 HOH TIP . F 3 HOH A 22 645 645 HOH TIP . F 3 HOH A 23 647 647 HOH TIP . F 3 HOH A 24 649 649 HOH TIP . F 3 HOH A 25 653 653 HOH TIP . F 3 HOH A 26 658 658 HOH TIP . F 3 HOH A 27 666 666 HOH TIP . F 3 HOH A 28 675 675 HOH TIP . F 3 HOH A 29 676 676 HOH TIP . F 3 HOH A 30 677 677 HOH TIP . F 3 HOH A 31 680 680 HOH TIP . F 3 HOH A 32 682 682 HOH TIP . F 3 HOH A 33 683 683 HOH TIP . F 3 HOH A 34 684 684 HOH TIP . F 3 HOH A 35 689 689 HOH TIP . F 3 HOH A 36 692 692 HOH TIP . F 3 HOH A 37 693 693 HOH TIP . F 3 HOH A 38 696 696 HOH TIP . F 3 HOH A 39 698 698 HOH TIP . F 3 HOH A 40 708 708 HOH TIP . F 3 HOH A 41 709 709 HOH TIP . F 3 HOH A 42 714 714 HOH TIP . F 3 HOH A 43 719 719 HOH TIP . F 3 HOH A 44 724 724 HOH TIP . F 3 HOH A 45 725 725 HOH TIP . F 3 HOH A 46 726 726 HOH TIP . G 3 HOH B 1 611 611 HOH TIP . G 3 HOH B 2 613 613 HOH TIP . G 3 HOH B 3 614 614 HOH TIP . G 3 HOH B 4 620 620 HOH TIP . G 3 HOH B 5 621 621 HOH TIP . G 3 HOH B 6 624 624 HOH TIP . G 3 HOH B 7 626 626 HOH TIP . G 3 HOH B 8 628 628 HOH TIP . G 3 HOH B 9 635 635 HOH TIP . G 3 HOH B 10 642 642 HOH TIP . G 3 HOH B 11 643 643 HOH TIP . G 3 HOH B 12 651 651 HOH TIP . G 3 HOH B 13 652 652 HOH TIP . G 3 HOH B 14 655 655 HOH TIP . G 3 HOH B 15 661 661 HOH TIP . G 3 HOH B 16 669 669 HOH TIP . G 3 HOH B 17 670 670 HOH TIP . G 3 HOH B 18 672 672 HOH TIP . G 3 HOH B 19 678 678 HOH TIP . G 3 HOH B 20 679 679 HOH TIP . G 3 HOH B 21 681 681 HOH TIP . G 3 HOH B 22 686 686 HOH TIP . G 3 HOH B 23 688 688 HOH TIP . G 3 HOH B 24 690 690 HOH TIP . G 3 HOH B 25 691 691 HOH TIP . G 3 HOH B 26 697 697 HOH TIP . G 3 HOH B 27 699 699 HOH TIP . G 3 HOH B 28 701 701 HOH TIP . G 3 HOH B 29 703 703 HOH TIP . G 3 HOH B 30 712 712 HOH TIP . G 3 HOH B 31 713 713 HOH TIP . G 3 HOH B 32 717 717 HOH TIP . G 3 HOH B 33 718 718 HOH TIP . G 3 HOH B 34 722 722 HOH TIP . G 3 HOH B 35 723 723 HOH TIP . G 3 HOH B 36 729 729 HOH TIP . H 3 HOH C 1 602 602 HOH TIP . H 3 HOH C 2 603 603 HOH TIP . H 3 HOH C 3 605 605 HOH TIP . H 3 HOH C 4 609 609 HOH TIP . H 3 HOH C 5 610 610 HOH TIP . H 3 HOH C 6 616 616 HOH TIP . H 3 HOH C 7 617 617 HOH TIP . H 3 HOH C 8 627 627 HOH TIP . H 3 HOH C 9 629 629 HOH TIP . H 3 HOH C 10 630 630 HOH TIP . H 3 HOH C 11 640 640 HOH TIP . H 3 HOH C 12 644 644 HOH TIP . H 3 HOH C 13 646 646 HOH TIP . H 3 HOH C 14 648 648 HOH TIP . H 3 HOH C 15 650 650 HOH TIP . H 3 HOH C 16 654 654 HOH TIP . H 3 HOH C 17 656 656 HOH TIP . H 3 HOH C 18 657 657 HOH TIP . H 3 HOH C 19 659 659 HOH TIP . H 3 HOH C 20 660 660 HOH TIP . H 3 HOH C 21 662 662 HOH TIP . H 3 HOH C 22 663 663 HOH TIP . H 3 HOH C 23 664 664 HOH TIP . H 3 HOH C 24 665 665 HOH TIP . H 3 HOH C 25 667 667 HOH TIP . H 3 HOH C 26 668 668 HOH TIP . H 3 HOH C 27 671 671 HOH TIP . H 3 HOH C 28 673 673 HOH TIP . H 3 HOH C 29 674 674 HOH TIP . H 3 HOH C 30 685 685 HOH TIP . H 3 HOH C 31 687 687 HOH TIP . H 3 HOH C 32 694 694 HOH TIP . H 3 HOH C 33 695 695 HOH TIP . H 3 HOH C 34 700 700 HOH TIP . H 3 HOH C 35 702 702 HOH TIP . H 3 HOH C 36 704 704 HOH TIP . H 3 HOH C 37 705 705 HOH TIP . H 3 HOH C 38 706 706 HOH TIP . H 3 HOH C 39 707 707 HOH TIP . H 3 HOH C 40 710 710 HOH TIP . H 3 HOH C 41 711 711 HOH TIP . H 3 HOH C 42 715 715 HOH TIP . H 3 HOH C 43 716 716 HOH TIP . H 3 HOH C 44 720 720 HOH TIP . H 3 HOH C 45 721 721 HOH TIP . H 3 HOH C 46 727 727 HOH TIP . H 3 HOH C 47 728 728 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DUT . . . D 2 39.599 10.475 13.394 1 48.33 ? N1 DUT 802 A 1 HETATM 2 C C2 DUT . . . D 2 39.235 9.625 14.351 1 46.23 ? C2 DUT 802 A 1 HETATM 3 N N3 DUT . . . D 2 37.9 9.24 14.385 1 44.42 ? N3 DUT 802 A 1 HETATM 4 C C4 DUT . . . D 2 36.901 9.659 13.499 1 41.47 ? C4 DUT 802 A 1 HETATM 5 C C5 DUT . . . D 2 37.299 10.585 12.456 1 41.29 ? C5 DUT 802 A 1 HETATM 6 C C6 DUT . . . D 2 38.595 10.983 12.395 1 43.7 ? C6 DUT 802 A 1 HETATM 7 O O2 DUT . . . D 2 40.041 9.217 15.149 1 45.28 ? O2 DUT 802 A 1 HETATM 8 O O4 DUT . . . D 2 35.793 9.222 13.668 1 38.1 ? O4 DUT 802 A 1 HETATM 9 C C1' DUT . . . D 2 40.891 11.103 13.029 1 52.49 ? C1' DUT 802 A 1 HETATM 10 C C2' DUT . . . D 2 41.796 10.02 12.579 1 53.19 ? C2' DUT 802 A 1 HETATM 11 C C3' DUT . . . D 2 42.217 10.44 11.178 1 55.43 ? C3' DUT 802 A 1 HETATM 12 C C4' DUT . . . D 2 42.297 11.949 11.312 1 58.33 ? C4' DUT 802 A 1 HETATM 13 O O4' DUT . . . D 2 41.225 12.263 12.232 1 56.59 ? O4' DUT 802 A 1 HETATM 14 O O3' DUT . . . D 2 42.572 9.93 9.881 1 53.15 ? O3' DUT 802 A 1 HETATM 15 C C5' DUT . . . D 2 41.79 13.073 10.382 1 64.2 ? C5' DUT 802 A 1 HETATM 16 O O5' DUT . . . D 2 40.279 13.389 10.59 1 73.96 ? O5' DUT 802 A 1 HETATM 17 P PA DUT . . . D 2 39.967 14.522 9.51 1 79.74 ? PA DUT 802 A 1 HETATM 18 O O1A DUT . . . D 2 41.148 14.901 8.667 1 81.12 ? O1A DUT 802 A 1 HETATM 19 O O2A DUT . . . D 2 38.744 14.115 8.769 1 78.87 ? O2A DUT 802 A 1 HETATM 20 O O3A DUT . . . D 2 39.136 15.797 10.119 1 84.04 ? O3A DUT 802 A 1 HETATM 21 P PB DUT . . . D 2 39.465 17.381 9.93 1 89.69 ? PB DUT 802 A 1 HETATM 22 O O1B DUT . . . D 2 38.274 18.004 9.283 1 88.78 ? O1B DUT 802 A 1 HETATM 23 O O2B DUT . . . D 2 39.591 17.9 11.321 1 90.28 ? O2B DUT 802 A 1 HETATM 24 O O3B DUT . . . D 2 40.821 17.667 9.05 1 91.39 ? O3B DUT 802 A 1 HETATM 25 P PG DUT . . . D 2 41.514 18.39 7.698 1 92.62 ? PG DUT 802 A 1 HETATM 26 O O1G DUT . . . D 2 41.775 17.052 7.115 1 92.99 ? O1G DUT 802 A 1 HETATM 27 O O2G DUT . . . D 2 42.85 18.965 8.058 1 92.49 ? O2G DUT 802 A 1 HETATM 28 O O3G DUT . . . D 2 40.855 19.215 6.588 1 91.52 ? O3G DUT 802 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #