data_1F80
#
_model_server_result.job_id            '_u10R3RLSwTHsGuoQAXY7g' 
_model_server_result.datetime_utc      '2024-11-09 01:26:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1f80 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1255}' 
#
_entry.id    1F80 
#
_exptl.entry_id    1F80 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1F80 
_cell.length_a            78.458 
_cell.length_b            122.032 
_cell.length_c            136.767 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1F80 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C ASP 40 D ASP 35 1_555 D N PN2 41 D PN2 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 D C PN2 41 D PN2 36 1_555 D N LEU 42 D LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 E C ASP 40 E ASP 35 1_555 E N PN2 41 E PN2 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 E C PN2 41 E PN2 36 1_555 E N LEU 42 E LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 F C ASP 40 F ASP 35 1_555 F N PN2 41 F PN2 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 F C PN2 41 F PN2 36 1_555 F N LEU 42 F LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A OG1 THR 103 A THR 104 1_555 G NA NA . A NA 1255 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc2 G NA NA . A NA 1255 1_555 C OD2 ASP 7 C ASP 8 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc3 G NA NA . A NA 1255 1_555 C O ILE 8 C ILE 9 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1F80 
_atom_sites.fract_transf_matrix[1][1]    0.012746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007312 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NA A 1 1255 1 NA NA A 
H 4 HOH A 1 1256 1 HOH HOH . 
H 4 HOH A 2 1257 2 HOH HOH . 
H 4 HOH A 3 1258 3 HOH HOH . 
H 4 HOH A 4 1259 4 HOH HOH . 
H 4 HOH A 5 1260 5 HOH HOH . 
H 4 HOH A 6 1261 6 HOH HOH . 
H 4 HOH A 7 1262 7 HOH HOH . 
H 4 HOH A 8 1263 8 HOH HOH . 
H 4 HOH A 9 1264 9 HOH HOH . 
H 4 HOH A 10 1265 10 HOH HOH . 
H 4 HOH A 11 1266 12 HOH HOH . 
H 4 HOH A 12 1267 13 HOH HOH . 
H 4 HOH A 13 1268 14 HOH HOH . 
H 4 HOH A 14 1269 15 HOH HOH . 
H 4 HOH A 15 1270 16 HOH HOH . 
H 4 HOH A 16 1271 27 HOH HOH . 
H 4 HOH A 17 1272 28 HOH HOH . 
H 4 HOH A 18 1273 29 HOH HOH . 
H 4 HOH A 19 1274 30 HOH HOH . 
H 4 HOH A 20 1275 35 HOH HOH . 
H 4 HOH A 21 1276 36 HOH HOH . 
H 4 HOH A 22 1277 37 HOH HOH . 
H 4 HOH A 23 1278 38 HOH HOH . 
H 4 HOH A 24 1279 39 HOH HOH . 
H 4 HOH A 25 1280 40 HOH HOH . 
H 4 HOH A 26 1281 41 HOH HOH . 
H 4 HOH A 27 1282 42 HOH HOH . 
H 4 HOH A 28 1283 56 HOH HOH . 
H 4 HOH A 29 1284 59 HOH HOH . 
H 4 HOH A 30 1285 61 HOH HOH . 
H 4 HOH A 31 1286 64 HOH HOH . 
H 4 HOH A 32 1287 65 HOH HOH . 
H 4 HOH A 33 1288 69 HOH HOH . 
H 4 HOH A 34 1289 72 HOH HOH . 
H 4 HOH A 35 1290 74 HOH HOH . 
H 4 HOH A 36 1291 75 HOH HOH . 
H 4 HOH A 37 1292 83 HOH HOH . 
H 4 HOH A 38 1293 88 HOH HOH . 
H 4 HOH A 39 1294 94 HOH HOH . 
H 4 HOH A 40 1295 95 HOH HOH . 
H 4 HOH A 41 1296 97 HOH HOH . 
H 4 HOH A 42 1297 101 HOH HOH . 
H 4 HOH A 43 1298 103 HOH HOH . 
H 4 HOH A 44 1299 108 HOH HOH . 
H 4 HOH A 45 1300 109 HOH HOH . 
H 4 HOH A 46 1301 110 HOH HOH . 
H 4 HOH A 47 1302 113 HOH HOH . 
I 4 HOH B 1 122 18 HOH HOH . 
I 4 HOH B 2 123 19 HOH HOH . 
I 4 HOH B 3 124 21 HOH HOH . 
I 4 HOH B 4 125 23 HOH HOH . 
I 4 HOH B 5 126 31 HOH HOH . 
I 4 HOH B 6 127 32 HOH HOH . 
I 4 HOH B 7 128 33 HOH HOH . 
I 4 HOH B 8 129 34 HOH HOH . 
I 4 HOH B 9 130 43 HOH HOH . 
I 4 HOH B 10 131 45 HOH HOH . 
I 4 HOH B 11 132 46 HOH HOH . 
I 4 HOH B 12 133 47 HOH HOH . 
I 4 HOH B 13 134 55 HOH HOH . 
I 4 HOH B 14 135 57 HOH HOH . 
I 4 HOH B 15 136 58 HOH HOH . 
I 4 HOH B 16 137 63 HOH HOH . 
I 4 HOH B 17 138 67 HOH HOH . 
I 4 HOH B 18 139 71 HOH HOH . 
I 4 HOH B 19 140 73 HOH HOH . 
I 4 HOH B 20 141 77 HOH HOH . 
I 4 HOH B 21 142 82 HOH HOH . 
I 4 HOH B 22 143 84 HOH HOH . 
I 4 HOH B 23 144 85 HOH HOH . 
I 4 HOH B 24 145 86 HOH HOH . 
I 4 HOH B 25 146 90 HOH HOH . 
I 4 HOH B 26 147 91 HOH HOH . 
I 4 HOH B 27 148 92 HOH HOH . 
I 4 HOH B 28 149 99 HOH HOH . 
I 4 HOH B 29 150 106 HOH HOH . 
I 4 HOH B 30 151 107 HOH HOH . 
I 4 HOH B 31 152 111 HOH HOH . 
I 4 HOH B 32 153 112 HOH HOH . 
I 4 HOH B 33 154 118 HOH HOH . 
I 4 HOH B 34 155 123 HOH HOH . 
I 4 HOH B 35 156 124 HOH HOH . 
J 4 HOH C 1 122 11 HOH HOH . 
J 4 HOH C 2 123 17 HOH HOH . 
J 4 HOH C 3 124 22 HOH HOH . 
J 4 HOH C 4 125 24 HOH HOH . 
J 4 HOH C 5 126 25 HOH HOH . 
J 4 HOH C 6 127 26 HOH HOH . 
J 4 HOH C 7 128 44 HOH HOH . 
J 4 HOH C 8 129 48 HOH HOH . 
J 4 HOH C 9 130 49 HOH HOH . 
J 4 HOH C 10 131 50 HOH HOH . 
J 4 HOH C 11 132 51 HOH HOH . 
J 4 HOH C 12 133 52 HOH HOH . 
J 4 HOH C 13 134 53 HOH HOH . 
J 4 HOH C 14 135 54 HOH HOH . 
J 4 HOH C 15 136 66 HOH HOH . 
J 4 HOH C 16 137 68 HOH HOH . 
J 4 HOH C 17 138 70 HOH HOH . 
J 4 HOH C 18 139 78 HOH HOH . 
J 4 HOH C 19 140 81 HOH HOH . 
J 4 HOH C 20 141 87 HOH HOH . 
J 4 HOH C 21 142 89 HOH HOH . 
J 4 HOH C 22 143 93 HOH HOH . 
J 4 HOH C 23 144 102 HOH HOH . 
J 4 HOH C 24 145 117 HOH HOH . 
J 4 HOH C 25 146 120 HOH HOH . 
J 4 HOH C 26 147 121 HOH HOH . 
K 4 HOH D 1 77 60 HOH HOH . 
K 4 HOH D 2 78 62 HOH HOH . 
K 4 HOH D 3 79 76 HOH HOH . 
K 4 HOH D 4 80 98 HOH HOH . 
K 4 HOH D 5 81 100 HOH HOH . 
K 4 HOH D 6 82 114 HOH HOH . 
K 4 HOH D 7 83 115 HOH HOH . 
L 4 HOH E 1 79 79 HOH HOH . 
L 4 HOH E 2 80 80 HOH HOH . 
M 4 HOH F 1 77 20 HOH HOH . 
M 4 HOH F 2 78 96 HOH HOH . 
M 4 HOH F 3 79 104 HOH HOH . 
M 4 HOH F 4 80 105 HOH HOH . 
M 4 HOH F 5 81 116 HOH HOH . 
M 4 HOH F 6 82 119 HOH HOH . 
M 4 HOH F 7 83 122 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     A 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               20.766 
_atom_site.Cartn_y               19.095 
_atom_site.Cartn_z               15.633 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.48 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1255 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#