data_1F88 # _model_server_result.job_id JbyMkZWFEHzlZ8F0DHb7zQ _model_server_result.datetime_utc '2024-11-04 22:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":906}' # _entry.id 1F88 # _exptl.entry_id 1F88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F88 _cell.length_a 97.246 _cell.length_b 97.246 _cell.length_c 149.544 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 A,C,D,G,H,I,J,K,L,S 2 1 B,E,F,M,N,O,P,Q,R,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG ? 501 NAG 2 n C NAG 2 C 2 NAG ? 502 NAG 2 n D NAG 1 D 1 NAG ? 701 NAG 2 n D NAG 2 D 2 NAG ? 702 NAG 3 n E NAG 1 E 1 NAG ? 601 NAG 3 n E NAG 2 E 2 NAG ? 602 NAG 3 n E MAN 3 E 3 MAN ? 603 MAN 2 n F NAG 1 F 1 NAG ? 801 NAG 2 n F NAG 2 F 2 NAG ? 802 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A NZ LYS 296 A LYS 296 1_555 L C15 RET . A RET 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 B ND2 ASN 2 B ASN 2 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 B ND2 ASN 15 B ASN 15 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B NZ LYS 296 B LYS 296 1_555 R C15 RET . B RET 978 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 MAN . E MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? metalc ? metalc1 A O ALA 132 A ALA 132 1_555 H HG HG . A HG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.388 ? metalc ? metalc2 A OE2 GLU 196 A GLU 196 2_655 P ZN ZN . B ZN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 A OE1 GLU 196 A GLU 196 2_655 P ZN ZN . B ZN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A OE1 GLU 201 A GLU 201 1_555 J ZN ZN . A ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc5 A SG CYS 222 A CYS 222 1_555 H HG HG . A HG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A N TYR 223 A TYR 223 1_555 H HG HG . A HG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.473 ? metalc ? metalc7 A SG CYS 264 A CYS 264 1_555 G HG HG . A HG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc8 A NE2 GLN 279 A GLN 279 1_555 J ZN ZN . A ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 A OG1 THR 297 A THR 297 1_555 G HG HG . A HG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc10 A O GLN 312 A GLN 312 1_555 I HG HG . A HG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.295 ? metalc ? metalc11 A SG CYS 316 A CYS 316 1_555 I HG HG . A HG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc12 B ND1 HIS 65 B HIS 65 1_555 O HG HG . B HG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.468 ? metalc ? metalc13 B O ALA 132 B ALA 132 1_555 N HG HG . B HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.218 ? metalc ? metalc14 B NE2 HIS 195 B HIS 195 1_555 Q ZN ZN . B ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc15 B SG CYS 222 B CYS 222 1_555 N HG HG . B HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc16 B O CYS 222 B CYS 222 1_555 N HG HG . B HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.367 ? metalc ? metalc17 B N TYR 223 B TYR 223 1_555 N HG HG . B HG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.521 ? metalc ? metalc18 B O ALA 260 B ALA 260 1_555 M HG HG . B HG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc19 B SG CYS 264 B CYS 264 1_555 M HG HG . B HG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc20 B OG1 THR 297 B THR 297 1_555 M HG HG . B HG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.411 ? metalc ? metalc21 B SG CYS 316 B CYS 316 1_555 O HG HG . B HG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1F88 _atom_sites.fract_transf_matrix[1][1] 0.010283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HG A 1 901 901 HG HG2 . H 4 HG A 1 903 903 HG HG2 . I 4 HG A 1 905 905 HG HG2 . J 5 ZN A 1 907 907 ZN ZN2 . K 5 ZN A 1 910 910 ZN ZN2 . L 6 RET A 1 977 296 RET RET . M 4 HG B 1 902 902 HG HG2 . N 4 HG B 1 904 904 HG HG2 . O 4 HG B 1 906 906 HG HG2 . P 5 ZN B 1 908 908 ZN ZN2 . Q 5 ZN B 1 909 909 ZN ZN2 . R 6 RET B 1 978 296 RET RET . S 7 HOH A 1 950 950 HOH WAT . S 7 HOH A 2 952 952 HOH WAT . S 7 HOH A 3 953 953 HOH WAT . S 7 HOH A 4 958 958 HOH WAT . S 7 HOH A 5 959 959 HOH WAT . S 7 HOH A 6 962 962 HOH WAT . S 7 HOH A 7 963 963 HOH WAT . S 7 HOH A 8 964 964 HOH WAT . S 7 HOH A 9 965 965 HOH WAT . S 7 HOH A 10 966 966 HOH WAT . S 7 HOH A 11 967 967 HOH WAT . S 7 HOH A 12 968 968 HOH WAT . S 7 HOH A 13 970 970 HOH WAT . S 7 HOH A 14 971 971 HOH WAT . S 7 HOH A 15 972 972 HOH WAT . S 7 HOH A 16 974 974 HOH WAT . T 7 HOH B 1 951 951 HOH WAT . T 7 HOH B 2 954 954 HOH WAT . T 7 HOH B 3 955 955 HOH WAT . T 7 HOH B 4 956 956 HOH WAT . T 7 HOH B 5 957 957 HOH WAT . T 7 HOH B 6 960 960 HOH WAT . T 7 HOH B 7 961 961 HOH WAT . T 7 HOH B 8 969 969 HOH WAT . T 7 HOH B 9 973 973 HOH WAT . T 7 HOH B 10 975 975 HOH WAT . T 7 HOH B 11 976 976 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x 28.517 _atom_site.Cartn_y 31.198 _atom_site.Cartn_z -1.046 _atom_site.occupancy 0.73 _atom_site.B_iso_or_equiv 168.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 906 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #