data_1F92 # _model_server_result.job_id dZq-1EZetlg5qds4Zg-Hsw _model_server_result.datetime_utc '2024-11-21 23:04:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 1F92 # _exptl.entry_id 1F92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.826 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[2,4,6-TRIISOPROPYL-PHENYLSULFONYL-L-[3-AMIDINO-PHENYLALANINYL]]-N'-BETA-ALANINYL-PIPERAZINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F92 _cell.length_a 52.8 _cell.length_b 54.6 _cell.length_c 82.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 42 1_555 A SG CYS 47 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 39 A CYS 50 1_555 A SG CYS 110 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 135 A CYS 136 1_555 A SG CYS 204 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 167 A CYS 168 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 194 A CYS 191 1_555 A SG CYS 222 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C32 H48 N6 O4 S' _chem_comp.formula_weight 612.826 _chem_comp.id UKP _chem_comp.mon_nstd_flag . _chem_comp.name "[2,4,6-TRIISOPROPYL-PHENYLSULFONYL-L-[3-AMIDINO-PHENYLALANINYL]]-N'-BETA-ALANINYL-PIPERAZINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "[2,4,6-TRIISOPROPYL-PHENYLSULFONYL-L-[3-AMIDINO-PHENYLALANINE]]-PIPERAZINE-N'-BETA-ALANINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA UKP sing 362 n n N S UKP sing 363 n n N HN1 UKP sing 364 n n CA CB UKP sing 365 n n CA C UKP sing 366 n n CA HA1 UKP sing 367 n n CX CE1 UKP sing 368 n n CX NX1 UKP sing 369 n n CX NX2 UKP doub 370 n n O C UKP doub 371 n n CB CG1 UKP sing 372 n n CB HCB1 UKP sing 373 n n CB HCB2 UKP sing 374 n n CG1 CD1 UKP doub 375 n y CG1 CD2 UKP sing 376 n y CD1 CE1 UKP sing 377 n y CD1 HD11 UKP sing 378 n n CE1 CZ UKP doub 379 n y CZ CE2 UKP sing 380 n y CZ HZ1 UKP sing 381 n n CE2 CD2 UKP doub 382 n y CE2 HE21 UKP sing 383 n n CD2 HD21 UKP sing 384 n n NX1 HX11 UKP sing 385 n n NX1 HX12 UKP sing 386 n n NX2 HX21 UKP sing 387 n n C N1 UKP sing 388 n n C6 C7 UKP doub 389 n y C6 C11 UKP sing 390 n y C6 S UKP sing 391 n n C7 C8 UKP sing 392 n y C7 C12 UKP sing 393 n n C8 C9 UKP doub 394 n y C8 H81 UKP sing 395 n n C9 C10 UKP sing 396 n y C9 C18 UKP sing 397 n n C10 C11 UKP doub 398 n y C10 H101 UKP sing 399 n n C11 C15 UKP sing 400 n n C12 C13 UKP sing 401 n n C12 C14 UKP sing 402 n n C12 H121 UKP sing 403 n n C13 H131 UKP sing 404 n n C13 H132 UKP sing 405 n n C13 H133 UKP sing 406 n n C14 H141 UKP sing 407 n n C14 H142 UKP sing 408 n n C14 H143 UKP sing 409 n n C15 C16 UKP sing 410 n n C15 C17 UKP sing 411 n n C15 H151 UKP sing 412 n n C16 H161 UKP sing 413 n n C16 H162 UKP sing 414 n n C16 H163 UKP sing 415 n n C17 H171 UKP sing 416 n n C17 H172 UKP sing 417 n n C17 H173 UKP sing 418 n n C18 C19 UKP sing 419 n n C18 C20 UKP sing 420 n n C18 H181 UKP sing 421 n n C19 H191 UKP sing 422 n n C19 H192 UKP sing 423 n n C19 H193 UKP sing 424 n n C20 H201 UKP sing 425 n n C20 H202 UKP sing 426 n n C20 H203 UKP sing 427 n n S OS1 UKP doub 428 n n S OS2 UKP doub 429 n n N1 C1 UKP sing 430 n n N1 C5 UKP sing 431 n n C1 C2 UKP sing 432 n n C1 H11 UKP sing 433 n n C1 H12 UKP sing 434 n n C2 N2 UKP sing 435 n n C2 H21 UKP sing 436 n n C2 H22 UKP sing 437 n n N2 C4 UKP sing 438 n n N2 C21 UKP sing 439 n n C4 C5 UKP sing 440 n n C4 H41 UKP sing 441 n n C4 H42 UKP sing 442 n n C5 H51 UKP sing 443 n n C5 H52 UKP sing 444 n n C21 O1 UKP doub 445 n n C21 C22 UKP sing 446 n n C22 C23 UKP sing 447 n n C22 H221 UKP sing 448 n n C22 H222 UKP sing 449 n n C23 N24 UKP sing 450 n n C23 H231 UKP sing 451 n n C23 H232 UKP sing 452 n n N24 H241 UKP sing 453 n n N24 H242 UKP sing 454 n n # _atom_sites.entry_id 1F92 _atom_sites.fract_transf_matrix[1][1] 0.018939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 2 SO4 A 1 402 402 SO4 SO4 . D 3 UKP A 1 300 300 UKP INH . E 4 HOH A 1 1000 1 HOH HOH . E 4 HOH A 2 1001 2 HOH HOH . E 4 HOH A 3 1002 3 HOH HOH . E 4 HOH A 4 1003 5 HOH HOH . E 4 HOH A 5 1004 6 HOH HOH . E 4 HOH A 6 1005 7 HOH HOH . E 4 HOH A 7 1006 8 HOH HOH . E 4 HOH A 8 1007 9 HOH HOH . E 4 HOH A 9 1008 10 HOH HOH . E 4 HOH A 10 1009 11 HOH HOH . E 4 HOH A 11 1010 12 HOH HOH . E 4 HOH A 12 1011 13 HOH HOH . E 4 HOH A 13 1012 14 HOH HOH . E 4 HOH A 14 1013 15 HOH HOH . E 4 HOH A 15 1014 16 HOH HOH . E 4 HOH A 16 1015 17 HOH HOH . E 4 HOH A 17 1016 18 HOH HOH . E 4 HOH A 18 1017 19 HOH HOH . E 4 HOH A 19 1018 20 HOH HOH . E 4 HOH A 20 1019 21 HOH HOH . E 4 HOH A 21 1020 22 HOH HOH . E 4 HOH A 22 1021 23 HOH HOH . E 4 HOH A 23 1022 24 HOH HOH . E 4 HOH A 24 1023 26 HOH HOH . E 4 HOH A 25 1024 27 HOH HOH . E 4 HOH A 26 1025 28 HOH HOH . E 4 HOH A 27 1026 30 HOH HOH . E 4 HOH A 28 1027 32 HOH HOH . E 4 HOH A 29 1028 33 HOH HOH . E 4 HOH A 30 1029 34 HOH HOH . E 4 HOH A 31 1030 35 HOH HOH . E 4 HOH A 32 1031 36 HOH HOH . E 4 HOH A 33 1032 37 HOH HOH . E 4 HOH A 34 1033 38 HOH HOH . E 4 HOH A 35 1034 39 HOH HOH . E 4 HOH A 36 1035 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N UKP . . . D 3 31.659 9.996 27.99 1 48.18 ? N UKP 300 A 1 HETATM 2 C CA UKP . . . D 3 30.207 9.932 28.007 1 45.41 ? CA UKP 300 A 1 HETATM 3 C CX UKP . . . D 3 32.628 4.232 27.764 1 28.57 ? CX UKP 300 A 1 HETATM 4 O O UKP . . . D 3 30.399 9.098 30.177 1 44.19 ? O UKP 300 A 1 HETATM 5 C CB UKP . . . D 3 29.754 8.756 27.109 1 42.38 ? CB UKP 300 A 1 HETATM 6 C CG1 UKP . . . D 3 30.148 7.09 27.778 1 36.52 ? CG1 UKP 300 A 1 HETATM 7 C CD1 UKP . . . D 3 31.282 6.316 27.473 1 35.77 ? CD1 UKP 300 A 1 HETATM 8 C CE1 UKP . . . D 3 31.495 5.029 28.062 1 32.72 ? CE1 UKP 300 A 1 HETATM 9 C CZ UKP . . . D 3 30.489 4.581 28.977 1 34.09 ? CZ UKP 300 A 1 HETATM 10 C CE2 UKP . . . D 3 29.358 5.359 29.278 1 34.39 ? CE2 UKP 300 A 1 HETATM 11 C CD2 UKP . . . D 3 29.197 6.599 28.678 1 33.28 ? CD2 UKP 300 A 1 HETATM 12 N NX1 UKP . . . D 3 32.59 2.99 27.794 1 24.4 ? NX1 UKP 300 A 1 HETATM 13 N NX2 UKP . . . D 3 33.807 4.663 27.42 1 23.32 ? NX2 UKP 300 A 1 HETATM 14 C C UKP . . . D 3 29.684 9.78 29.437 1 46.73 ? C UKP 300 A 1 HETATM 15 C C6 UKP . . . D 3 31.59 12.637 28.08 1 52.92 ? C6 UKP 300 A 1 HETATM 16 C C7 UKP . . . D 3 31.75 12.813 29.482 1 52.81 ? C7 UKP 300 A 1 HETATM 17 C C8 UKP . . . D 3 31.093 13.877 30.131 1 51.86 ? C8 UKP 300 A 1 HETATM 18 C C9 UKP . . . D 3 30.275 14.777 29.433 1 52.77 ? C9 UKP 300 A 1 HETATM 19 C C10 UKP . . . D 3 30.124 14.595 28.048 1 51.78 ? C10 UKP 300 A 1 HETATM 20 C C11 UKP . . . D 3 30.761 13.546 27.351 1 52.63 ? C11 UKP 300 A 1 HETATM 21 C C12 UKP . . . D 3 32.63 11.878 30.36 1 53.12 ? C12 UKP 300 A 1 HETATM 22 C C13 UKP . . . D 3 32.008 11.398 31.711 1 54.93 ? C13 UKP 300 A 1 HETATM 23 C C14 UKP . . . D 3 33.97 12.597 30.648 1 53.89 ? C14 UKP 300 A 1 HETATM 24 C C15 UKP . . . D 3 30.499 13.463 25.813 1 52.75 ? C15 UKP 300 A 1 HETATM 25 C C16 UKP . . . D 3 29.299 14.309 25.288 1 52.64 ? C16 UKP 300 A 1 HETATM 26 C C17 UKP . . . D 3 31.796 13.874 25.061 1 50.94 ? C17 UKP 300 A 1 HETATM 27 C C18 UKP . . . D 3 29.563 15.934 30.164 1 52.11 ? C18 UKP 300 A 1 HETATM 28 C C19 UKP . . . D 3 30.499 16.552 31.236 1 52.12 ? C19 UKP 300 A 1 HETATM 29 C C20 UKP . . . D 3 28.244 15.427 30.815 1 52.12 ? C20 UKP 300 A 1 HETATM 30 S S UKP . . . D 3 32.454 11.236 27.28 1 52.65 ? S UKP 300 A 1 HETATM 31 O OS1 UKP . . . D 3 33.846 11.191 27.699 1 51.93 ? OS1 UKP 300 A 1 HETATM 32 O OS2 UKP . . . D 3 32.222 11.14 25.853 1 53.83 ? OS2 UKP 300 A 1 HETATM 33 N N1 UKP . . . D 3 28.506 10.352 29.897 1 47.83 ? N1 UKP 300 A 1 HETATM 34 C C1 UKP . . . D 3 28.102 10.131 31.292 1 48.16 ? C1 UKP 300 A 1 HETATM 35 C C2 UKP . . . D 3 27.885 11.542 31.88 1 46.34 ? C2 UKP 300 A 1 HETATM 36 N N2 UKP . . . D 3 26.697 12.114 31.238 1 47.22 ? N2 UKP 300 A 1 HETATM 37 C C4 UKP . . . D 3 26.993 12.182 29.722 1 47.81 ? C4 UKP 300 A 1 HETATM 38 C C5 UKP . . . D 3 27.305 10.974 29.081 1 48.16 ? C5 UKP 300 A 1 HETATM 39 C C21 UKP . . . D 3 25.831 12.919 31.934 1 47.87 ? C21 UKP 300 A 1 HETATM 40 O O1 UKP . . . D 3 25.031 13.661 31.374 1 49.35 ? O1 UKP 300 A 1 HETATM 41 C C22 UKP . . . D 3 25.787 12.963 33.455 1 47.54 ? C22 UKP 300 A 1 HETATM 42 C C23 UKP . . . D 3 24.745 13.991 33.994 1 47.69 ? C23 UKP 300 A 1 HETATM 43 N N24 UKP . . . D 3 25.005 14.321 35.417 1 47.64 ? N24 UKP 300 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #