data_1F9C # _model_server_result.job_id B9R-Ye0glpVA2BgV2AFitw _model_server_result.datetime_utc '2025-02-27 13:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":374}' # _entry.id 1F9C # _exptl.entry_id 1F9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F9C _cell.length_a 136.979 _cell.length_b 136.979 _cell.length_c 82.968 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 136.979 136.979 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 136.979 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 136.979 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 197 A ASP 198 1_555 C MN MN . A MN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A OE2 GLU 223 A GLU 224 1_555 C MN MN . A MN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc3 A OD2 ASP 248 A ASP 249 1_555 C MN MN . A MN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 C MN MN . A MN 374 1_555 E O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 C MN MN . A MN 374 1_555 E O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc6 C MN MN . A MN 374 1_555 E O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc7 B OD2 ASP 197 B ASP 198 1_555 D MN MN . B MN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc8 B OE2 GLU 223 B GLU 224 1_555 D MN MN . B MN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc9 B OD2 ASP 248 B ASP 249 1_555 D MN MN . B MN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc10 D MN MN . B MN 374 1_555 F O HOH . B HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc11 D MN MN . B MN 374 1_555 F O HOH . B HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc12 D MN MN . B MN 374 1_555 F O HOH . B HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1F9C _atom_sites.fract_transf_matrix[1][1] 0.0073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 374 373 MN MN . D 2 MN B 1 374 374 MN MN . E 3 HOH A 1 375 1 HOH HOH . E 3 HOH A 2 376 3 HOH HOH . E 3 HOH A 3 377 5 HOH HOH . E 3 HOH A 4 378 6 HOH HOH . E 3 HOH A 5 379 8 HOH HOH . E 3 HOH A 6 380 11 HOH HOH . E 3 HOH A 7 381 17 HOH HOH . E 3 HOH A 8 382 19 HOH HOH . E 3 HOH A 9 383 20 HOH HOH . E 3 HOH A 10 384 21 HOH HOH . E 3 HOH A 11 385 30 HOH HOH . E 3 HOH A 12 386 31 HOH HOH . E 3 HOH A 13 387 32 HOH HOH . E 3 HOH A 14 388 34 HOH HOH . E 3 HOH A 15 389 35 HOH HOH . E 3 HOH A 16 390 36 HOH HOH . E 3 HOH A 17 391 38 HOH HOH . E 3 HOH A 18 392 40 HOH HOH . E 3 HOH A 19 393 42 HOH HOH . E 3 HOH A 20 394 43 HOH HOH . E 3 HOH A 21 395 44 HOH HOH . E 3 HOH A 22 396 49 HOH HOH . E 3 HOH A 23 397 51 HOH HOH . E 3 HOH A 24 398 55 HOH HOH . E 3 HOH A 25 399 59 HOH HOH . E 3 HOH A 26 400 62 HOH HOH . E 3 HOH A 27 401 63 HOH HOH . E 3 HOH A 28 402 64 HOH HOH . E 3 HOH A 29 403 74 HOH HOH . E 3 HOH A 30 404 76 HOH HOH . E 3 HOH A 31 405 79 HOH HOH . E 3 HOH A 32 406 81 HOH HOH . E 3 HOH A 33 407 82 HOH HOH . E 3 HOH A 34 408 83 HOH HOH . E 3 HOH A 35 409 85 HOH HOH . E 3 HOH A 36 410 87 HOH HOH . E 3 HOH A 37 411 93 HOH HOH . E 3 HOH A 38 412 95 HOH HOH . E 3 HOH A 39 413 98 HOH HOH . E 3 HOH A 40 414 100 HOH HOH . E 3 HOH A 41 415 101 HOH HOH . E 3 HOH A 42 416 102 HOH HOH . E 3 HOH A 43 417 105 HOH HOH . E 3 HOH A 44 418 107 HOH HOH . E 3 HOH A 45 419 108 HOH HOH . E 3 HOH A 46 420 112 HOH HOH . E 3 HOH A 47 421 114 HOH HOH . E 3 HOH A 48 422 115 HOH HOH . E 3 HOH A 49 423 118 HOH HOH . E 3 HOH A 50 424 119 HOH HOH . E 3 HOH A 51 425 120 HOH HOH . E 3 HOH A 52 426 121 HOH HOH . E 3 HOH A 53 427 122 HOH HOH . E 3 HOH A 54 428 123 HOH HOH . E 3 HOH A 55 429 124 HOH HOH . E 3 HOH A 56 430 125 HOH HOH . E 3 HOH A 57 431 126 HOH HOH . E 3 HOH A 58 432 127 HOH HOH . E 3 HOH A 59 433 129 HOH HOH . E 3 HOH A 60 434 130 HOH HOH . E 3 HOH A 61 435 132 HOH HOH . E 3 HOH A 62 436 134 HOH HOH . E 3 HOH A 63 437 136 HOH HOH . E 3 HOH A 64 438 140 HOH HOH . E 3 HOH A 65 439 141 HOH HOH . E 3 HOH A 66 440 145 HOH HOH . E 3 HOH A 67 441 146 HOH HOH . E 3 HOH A 68 442 149 HOH HOH . E 3 HOH A 69 443 150 HOH HOH . E 3 HOH A 70 444 152 HOH HOH . E 3 HOH A 71 445 154 HOH HOH . E 3 HOH A 72 446 159 HOH HOH . E 3 HOH A 73 447 160 HOH HOH . E 3 HOH A 74 448 165 HOH HOH . E 3 HOH A 75 449 168 HOH HOH . E 3 HOH A 76 450 169 HOH HOH . E 3 HOH A 77 451 170 HOH HOH . E 3 HOH A 78 452 172 HOH HOH . E 3 HOH A 79 453 175 HOH HOH . E 3 HOH A 80 454 176 HOH HOH . E 3 HOH A 81 455 177 HOH HOH . E 3 HOH A 82 456 180 HOH HOH . E 3 HOH A 83 457 183 HOH HOH . E 3 HOH A 84 458 184 HOH HOH . E 3 HOH A 85 459 188 HOH HOH . E 3 HOH A 86 460 189 HOH HOH . E 3 HOH A 87 461 193 HOH HOH . E 3 HOH A 88 462 194 HOH HOH . E 3 HOH A 89 463 195 HOH HOH . F 3 HOH B 1 375 2 HOH HOH . F 3 HOH B 2 376 4 HOH HOH . F 3 HOH B 3 377 7 HOH HOH . F 3 HOH B 4 378 9 HOH HOH . F 3 HOH B 5 379 10 HOH HOH . F 3 HOH B 6 380 12 HOH HOH . F 3 HOH B 7 381 13 HOH HOH . F 3 HOH B 8 382 14 HOH HOH . F 3 HOH B 9 383 15 HOH HOH . F 3 HOH B 10 384 16 HOH HOH . F 3 HOH B 11 385 18 HOH HOH . F 3 HOH B 12 386 22 HOH HOH . F 3 HOH B 13 387 23 HOH HOH . F 3 HOH B 14 388 24 HOH HOH . F 3 HOH B 15 389 25 HOH HOH . F 3 HOH B 16 390 26 HOH HOH . F 3 HOH B 17 391 27 HOH HOH . F 3 HOH B 18 392 28 HOH HOH . F 3 HOH B 19 393 29 HOH HOH . F 3 HOH B 20 394 33 HOH HOH . F 3 HOH B 21 395 37 HOH HOH . F 3 HOH B 22 396 39 HOH HOH . F 3 HOH B 23 397 41 HOH HOH . F 3 HOH B 24 398 45 HOH HOH . F 3 HOH B 25 399 46 HOH HOH . F 3 HOH B 26 400 47 HOH HOH . F 3 HOH B 27 401 48 HOH HOH . F 3 HOH B 28 402 50 HOH HOH . F 3 HOH B 29 403 52 HOH HOH . F 3 HOH B 30 404 53 HOH HOH . F 3 HOH B 31 405 54 HOH HOH . F 3 HOH B 32 406 56 HOH HOH . F 3 HOH B 33 407 57 HOH HOH . F 3 HOH B 34 408 58 HOH HOH . F 3 HOH B 35 409 60 HOH HOH . F 3 HOH B 36 410 61 HOH HOH . F 3 HOH B 37 411 65 HOH HOH . F 3 HOH B 38 412 66 HOH HOH . F 3 HOH B 39 413 67 HOH HOH . F 3 HOH B 40 414 68 HOH HOH . F 3 HOH B 41 415 69 HOH HOH . F 3 HOH B 42 416 70 HOH HOH . F 3 HOH B 43 417 71 HOH HOH . F 3 HOH B 44 418 72 HOH HOH . F 3 HOH B 45 419 73 HOH HOH . F 3 HOH B 46 420 75 HOH HOH . F 3 HOH B 47 421 77 HOH HOH . F 3 HOH B 48 422 78 HOH HOH . F 3 HOH B 49 423 80 HOH HOH . F 3 HOH B 50 424 84 HOH HOH . F 3 HOH B 51 425 86 HOH HOH . F 3 HOH B 52 426 88 HOH HOH . F 3 HOH B 53 427 89 HOH HOH . F 3 HOH B 54 428 90 HOH HOH . F 3 HOH B 55 429 91 HOH HOH . F 3 HOH B 56 430 92 HOH HOH . F 3 HOH B 57 431 94 HOH HOH . F 3 HOH B 58 432 96 HOH HOH . F 3 HOH B 59 433 97 HOH HOH . F 3 HOH B 60 434 99 HOH HOH . F 3 HOH B 61 435 103 HOH HOH . F 3 HOH B 62 436 104 HOH HOH . F 3 HOH B 63 437 106 HOH HOH . F 3 HOH B 64 438 109 HOH HOH . F 3 HOH B 65 439 110 HOH HOH . F 3 HOH B 66 440 111 HOH HOH . F 3 HOH B 67 441 113 HOH HOH . F 3 HOH B 68 442 116 HOH HOH . F 3 HOH B 69 443 117 HOH HOH . F 3 HOH B 70 444 128 HOH HOH . F 3 HOH B 71 445 131 HOH HOH . F 3 HOH B 72 446 133 HOH HOH . F 3 HOH B 73 447 135 HOH HOH . F 3 HOH B 74 448 137 HOH HOH . F 3 HOH B 75 449 138 HOH HOH . F 3 HOH B 76 450 139 HOH HOH . F 3 HOH B 77 451 142 HOH HOH . F 3 HOH B 78 452 143 HOH HOH . F 3 HOH B 79 453 144 HOH HOH . F 3 HOH B 80 454 147 HOH HOH . F 3 HOH B 81 455 148 HOH HOH . F 3 HOH B 82 456 151 HOH HOH . F 3 HOH B 83 457 153 HOH HOH . F 3 HOH B 84 458 155 HOH HOH . F 3 HOH B 85 459 156 HOH HOH . F 3 HOH B 86 460 157 HOH HOH . F 3 HOH B 87 461 158 HOH HOH . F 3 HOH B 88 462 161 HOH HOH . F 3 HOH B 89 463 162 HOH HOH . F 3 HOH B 90 464 163 HOH HOH . F 3 HOH B 91 465 164 HOH HOH . F 3 HOH B 92 466 166 HOH HOH . F 3 HOH B 93 467 167 HOH HOH . F 3 HOH B 94 468 171 HOH HOH . F 3 HOH B 95 469 173 HOH HOH . F 3 HOH B 96 470 174 HOH HOH . F 3 HOH B 97 471 178 HOH HOH . F 3 HOH B 98 472 179 HOH HOH . F 3 HOH B 99 473 181 HOH HOH . F 3 HOH B 100 474 182 HOH HOH . F 3 HOH B 101 475 185 HOH HOH . F 3 HOH B 102 476 186 HOH HOH . F 3 HOH B 103 477 187 HOH HOH . F 3 HOH B 104 478 190 HOH HOH . F 3 HOH B 105 479 191 HOH HOH . F 3 HOH B 106 480 192 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 90.261 _atom_site.Cartn_y 54.948 _atom_site.Cartn_z -16.107 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 374 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #