data_1F9W
#
_model_server_result.job_id            cc-Wu16b6p_wBisGo3DSOg 
_model_server_result.datetime_utc      '2024-11-23 07:02:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1f9w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":998}' 
#
_entry.id    1F9W 
#
_exptl.entry_id    1F9W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1F9W 
_cell.length_a            62.89 
_cell.length_b            62.89 
_cell.length_c            153.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1F9W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 99 A THR 481 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc2 C MG MG . A MG 996 1_555 D O2B ADP . A ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc3 C MG MG . A MG 996 1_555 D O3B ADP . A ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? 
metalc ? metalc4 B OG1 THR 99 B THR 481 1_555 E MG MG . B MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc5 E MG MG . B MG 997 1_555 F O2B ADP . B ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc6 E MG MG . B MG 997 1_555 F O3B ADP . B ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1F9W 
_atom_sites.fract_transf_matrix[1][1]    0.015901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015901 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 996 996 MG MG . 
D 3 ADP A 1 998 998 ADP ADP . 
E 2 MG B 1 997 997 MG MG . 
F 3 ADP B 1 999 999 ADP ADP . 
G 4 HOH A 1 1001 1001 HOH TIP . 
G 4 HOH A 2 1003 1003 HOH TIP . 
G 4 HOH A 3 1004 1004 HOH TIP . 
G 4 HOH A 4 1014 1014 HOH TIP . 
G 4 HOH A 5 1015 1015 HOH TIP . 
G 4 HOH A 6 1018 1018 HOH TIP . 
G 4 HOH A 7 1020 1020 HOH TIP . 
G 4 HOH A 8 1024 1024 HOH TIP . 
G 4 HOH A 9 1039 1039 HOH TIP . 
G 4 HOH A 10 1043 1043 HOH TIP . 
G 4 HOH A 11 1047 1047 HOH TIP . 
G 4 HOH A 12 1049 1049 HOH TIP . 
G 4 HOH A 13 1052 1052 HOH TIP . 
G 4 HOH A 14 1058 1058 HOH TIP . 
G 4 HOH A 15 1061 1061 HOH TIP . 
G 4 HOH A 16 1063 1063 HOH TIP . 
G 4 HOH A 17 1065 1065 HOH TIP . 
G 4 HOH A 18 1066 1066 HOH TIP . 
G 4 HOH A 19 1068 1068 HOH TIP . 
G 4 HOH A 20 1070 1070 HOH TIP . 
G 4 HOH A 21 1071 1071 HOH TIP . 
G 4 HOH A 22 1072 1072 HOH TIP . 
G 4 HOH A 23 1074 1074 HOH TIP . 
G 4 HOH A 24 1082 1082 HOH TIP . 
G 4 HOH A 25 1083 1083 HOH TIP . 
G 4 HOH A 26 1086 1086 HOH TIP . 
G 4 HOH A 27 1090 1090 HOH TIP . 
G 4 HOH A 28 1094 1094 HOH TIP . 
G 4 HOH A 29 1099 1099 HOH TIP . 
G 4 HOH A 30 1108 1108 HOH TIP . 
G 4 HOH A 31 1109 1109 HOH TIP . 
G 4 HOH A 32 1111 1111 HOH TIP . 
G 4 HOH A 33 1115 1115 HOH TIP . 
G 4 HOH A 34 1118 1118 HOH TIP . 
G 4 HOH A 35 1119 1119 HOH TIP . 
G 4 HOH A 36 1120 1120 HOH TIP . 
G 4 HOH A 37 1126 1126 HOH TIP . 
G 4 HOH A 38 1127 1127 HOH TIP . 
G 4 HOH A 39 1132 1132 HOH TIP . 
G 4 HOH A 40 1139 1139 HOH TIP . 
G 4 HOH A 41 1140 1140 HOH TIP . 
G 4 HOH A 42 1143 1143 HOH TIP . 
G 4 HOH A 43 1149 1149 HOH TIP . 
G 4 HOH A 44 1152 1152 HOH TIP . 
G 4 HOH A 45 1154 1154 HOH TIP . 
G 4 HOH A 46 1159 1159 HOH TIP . 
G 4 HOH A 47 1160 1160 HOH TIP . 
G 4 HOH A 48 1174 1174 HOH TIP . 
G 4 HOH A 49 1175 1175 HOH TIP . 
G 4 HOH A 50 1176 1176 HOH TIP . 
G 4 HOH A 51 1177 1177 HOH TIP . 
G 4 HOH A 52 1188 1188 HOH TIP . 
G 4 HOH A 53 1191 1191 HOH TIP . 
G 4 HOH A 54 1192 1192 HOH TIP . 
G 4 HOH A 55 1198 1198 HOH TIP . 
G 4 HOH A 56 1201 1201 HOH TIP . 
G 4 HOH A 57 1205 1205 HOH TIP . 
G 4 HOH A 58 1206 1206 HOH TIP . 
G 4 HOH A 59 1207 1207 HOH TIP . 
G 4 HOH A 60 1208 1208 HOH TIP . 
G 4 HOH A 61 1213 1213 HOH TIP . 
G 4 HOH A 62 1218 1218 HOH TIP . 
G 4 HOH A 63 1219 1219 HOH TIP . 
H 4 HOH B 1 1005 1005 HOH TIP . 
H 4 HOH B 2 1006 1006 HOH TIP . 
H 4 HOH B 3 1010 1010 HOH TIP . 
H 4 HOH B 4 1013 1013 HOH TIP . 
H 4 HOH B 5 1016 1016 HOH TIP . 
H 4 HOH B 6 1019 1019 HOH TIP . 
H 4 HOH B 7 1022 1022 HOH TIP . 
H 4 HOH B 8 1023 1023 HOH TIP . 
H 4 HOH B 9 1029 1029 HOH TIP . 
H 4 HOH B 10 1034 1034 HOH TIP . 
H 4 HOH B 11 1036 1036 HOH TIP . 
H 4 HOH B 12 1037 1037 HOH TIP . 
H 4 HOH B 13 1042 1042 HOH TIP . 
H 4 HOH B 14 1044 1044 HOH TIP . 
H 4 HOH B 15 1045 1045 HOH TIP . 
H 4 HOH B 16 1046 1046 HOH TIP . 
H 4 HOH B 17 1050 1050 HOH TIP . 
H 4 HOH B 18 1051 1051 HOH TIP . 
H 4 HOH B 19 1056 1056 HOH TIP . 
H 4 HOH B 20 1057 1057 HOH TIP . 
H 4 HOH B 21 1062 1062 HOH TIP . 
H 4 HOH B 22 1064 1064 HOH TIP . 
H 4 HOH B 23 1067 1067 HOH TIP . 
H 4 HOH B 24 1076 1076 HOH TIP . 
H 4 HOH B 25 1080 1080 HOH TIP . 
H 4 HOH B 26 1084 1084 HOH TIP . 
H 4 HOH B 27 1085 1085 HOH TIP . 
H 4 HOH B 28 1089 1089 HOH TIP . 
H 4 HOH B 29 1093 1093 HOH TIP . 
H 4 HOH B 30 1100 1100 HOH TIP . 
H 4 HOH B 31 1103 1103 HOH TIP . 
H 4 HOH B 32 1105 1105 HOH TIP . 
H 4 HOH B 33 1110 1110 HOH TIP . 
H 4 HOH B 34 1112 1112 HOH TIP . 
H 4 HOH B 35 1117 1117 HOH TIP . 
H 4 HOH B 36 1121 1121 HOH TIP . 
H 4 HOH B 37 1123 1123 HOH TIP . 
H 4 HOH B 38 1124 1124 HOH TIP . 
H 4 HOH B 39 1128 1128 HOH TIP . 
H 4 HOH B 40 1129 1129 HOH TIP . 
H 4 HOH B 41 1133 1133 HOH TIP . 
H 4 HOH B 42 1136 1136 HOH TIP . 
H 4 HOH B 43 1138 1138 HOH TIP . 
H 4 HOH B 44 1142 1142 HOH TIP . 
H 4 HOH B 45 1145 1145 HOH TIP . 
H 4 HOH B 46 1157 1157 HOH TIP . 
H 4 HOH B 47 1161 1161 HOH TIP . 
H 4 HOH B 48 1165 1165 HOH TIP . 
H 4 HOH B 49 1169 1169 HOH TIP . 
H 4 HOH B 50 1170 1170 HOH TIP . 
H 4 HOH B 51 1172 1172 HOH TIP . 
H 4 HOH B 52 1178 1178 HOH TIP . 
H 4 HOH B 53 1179 1179 HOH TIP . 
H 4 HOH B 54 1180 1180 HOH TIP . 
H 4 HOH B 55 1182 1182 HOH TIP . 
H 4 HOH B 56 1184 1184 HOH TIP . 
H 4 HOH B 57 1186 1186 HOH TIP . 
H 4 HOH B 58 1187 1187 HOH TIP . 
H 4 HOH B 59 1189 1189 HOH TIP . 
H 4 HOH B 60 1194 1194 HOH TIP . 
H 4 HOH B 61 1196 1196 HOH TIP . 
H 4 HOH B 62 1197 1197 HOH TIP . 
H 4 HOH B 63 1200 1200 HOH TIP . 
H 4 HOH B 64 1202 1202 HOH TIP . 
H 4 HOH B 65 1204 1204 HOH TIP . 
H 4 HOH B 66 1210 1210 HOH TIP . 
H 4 HOH B 67 1211 1211 HOH TIP . 
H 4 HOH B 68 1212 1212 HOH TIP . 
H 4 HOH B 69 1214 1214 HOH TIP . 
H 4 HOH B 70 1215 1215 HOH TIP . 
H 4 HOH B 71 1216 1216 HOH TIP . 
H 4 HOH B 72 1217 1217 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 3 31.973 98.661 82.179 1 47.78 ? PB ADP 998 A 1 
HETATM 2 O O1B ADP . . . D 3 30.565 99.098 82.024 1 39.29 ? O1B ADP 998 A 1 
HETATM 3 O O2B ADP . . . D 3 32.093 97.064 81.958 1 36.81 ? O2B ADP 998 A 1 
HETATM 4 O O3B ADP . . . D 3 32.899 99.432 81.279 1 43.43 ? O3B ADP 998 A 1 
HETATM 5 P PA ADP . . . D 3 33.508 98.05 84.484 1 51.18 ? PA ADP 998 A 1 
HETATM 6 O O1A ADP . . . D 3 32.784 97.029 85.236 1 56.09 ? O1A ADP 998 A 1 
HETATM 7 O O2A ADP . . . D 3 34.5 97.456 83.573 1 57.55 ? O2A ADP 998 A 1 
HETATM 8 O O3A ADP . . . D 3 32.457 98.846 83.637 1 51.27 ? O3A ADP 998 A 1 
HETATM 9 O O5' ADP . . . D 3 34.189 99.106 85.431 1 52.96 ? O5' ADP 998 A 1 
HETATM 10 C C5' ADP . . . D 3 33.821 100.493 85.495 1 49.76 ? C5' ADP 998 A 1 
HETATM 11 C C4' ADP . . . D 3 34.189 101.007 86.909 1 45.4 ? C4' ADP 998 A 1 
HETATM 12 O O4' ADP . . . D 3 32.988 100.988 87.72 1 49.97 ? O4' ADP 998 A 1 
HETATM 13 C C3' ADP . . . D 3 35.215 100.144 87.653 1 43.17 ? C3' ADP 998 A 1 
HETATM 14 O O3' ADP . . . D 3 36.196 100.928 88.349 1 53.01 ? O3' ADP 998 A 1 
HETATM 15 C C2' ADP . . . D 3 34.389 99.295 88.609 1 42.69 ? C2' ADP 998 A 1 
HETATM 16 O O2' ADP . . . D 3 35.129 98.832 89.751 1 46.18 ? O2' ADP 998 A 1 
HETATM 17 C C1' ADP . . . D 3 33.193 100.192 88.908 1 41.04 ? C1' ADP 998 A 1 
HETATM 18 N N9 ADP . . . D 3 31.959 99.39 89.219 1 35.59 ? N9 ADP 998 A 1 
HETATM 19 C C8 ADP . . . D 3 31.113 98.892 88.318 1 28.7 ? C8 ADP 998 A 1 
HETATM 20 N N7 ADP . . . D 3 30.138 98.225 88.933 1 27.92 ? N7 ADP 998 A 1 
HETATM 21 C C5 ADP . . . D 3 30.362 98.27 90.217 1 38.08 ? C5 ADP 998 A 1 
HETATM 22 C C6 ADP . . . D 3 29.737 97.765 91.36 1 39.07 ? C6 ADP 998 A 1 
HETATM 23 N N6 ADP . . . D 3 28.618 97.049 91.252 1 39.4 ? N6 ADP 998 A 1 
HETATM 24 N N1 ADP . . . D 3 30.253 98.02 92.601 1 36.98 ? N1 ADP 998 A 1 
HETATM 25 C C2 ADP . . . D 3 31.375 98.744 92.767 1 38.02 ? C2 ADP 998 A 1 
HETATM 26 N N3 ADP . . . D 3 32.004 99.227 91.673 1 43.77 ? N3 ADP 998 A 1 
HETATM 27 C C4 ADP . . . D 3 31.54 99.023 90.407 1 39.6 ? C4 ADP 998 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#