data_1FA0
#
_model_server_result.job_id            jQI2NJ8Y75xgWg9sD0rT5Q 
_model_server_result.datetime_utc      '2024-11-14 19:28:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fa0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":606}' 
#
_entry.id    1FA0 
#
_exptl.entry_id    1FA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              251.242 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-DEOXYADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1FA0 
_cell.length_a            73.8 
_cell.length_b            109.1 
_cell.length_c            238.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 100 A ASP 100 1_555 C MN MN . A MN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc2 A OD1 ASP 100 A ASP 100 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 A OD1 ASP 102 A ASP 102 1_555 C MN MN . A MN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc4 A OD2 ASP 102 A ASP 102 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc5 A OD1 ASP 154 A ASP 154 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? 
metalc ? metalc6 C MN MN . A MN 600 1_555 E O3G 3AT . A 3AT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc7 C MN MN . A MN 600 1_555 E O2B 3AT . A 3AT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc8 C MN MN . A MN 600 1_555 E O1A 3AT . A 3AT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc9 C MN MN . A MN 600 1_555 L O HOH . A HOH 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc10 D MN MN . A MN 601 1_555 E O1A 3AT . A 3AT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc11 B OD2 ASP 100 B ASP 100 1_555 H MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc12 B OD1 ASP 100 B ASP 100 1_555 I MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc13 B OD1 ASP 102 B ASP 102 1_555 H MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc14 B OD2 ASP 102 B ASP 102 1_555 I MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc15 B OD2 ASP 154 B ASP 154 1_555 I MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc16 H MN MN . B MN 602 1_555 J O1B 3AT . B 3AT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc17 H MN MN . B MN 602 1_555 J O1A 3AT . B 3AT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc18 H MN MN . B MN 602 1_555 J O1G 3AT . B 3AT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc19 I MN MN . B MN 603 1_555 J O1A 3AT . B 3AT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
#
_chem_comp.formula           'C10 H13 N5 O3' 
_chem_comp.formula_weight    251.242 
_chem_comp.id                3AD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-DEOXYADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' 3AD sing 1 n n 
O5' HO5' 3AD sing 2 n n 
C5' C4' 3AD sing 3 n n 
C5' "H5'1" 3AD sing 4 n n 
C5' "H5'2" 3AD sing 5 n n 
C4' O4' 3AD sing 6 n n 
C4' C3' 3AD sing 7 n n 
C4' H4' 3AD sing 8 n n 
O4' C1' 3AD sing 9 n n 
C3' C2' 3AD sing 10 n n 
C3' "H3'1" 3AD sing 11 n n 
C3' "H3'2" 3AD sing 12 n n 
C2' O2' 3AD sing 13 n n 
C2' C1' 3AD sing 14 n n 
C2' H2' 3AD sing 15 n n 
O2' HO2' 3AD sing 16 n n 
C1' N9 3AD sing 17 n n 
C1' H1' 3AD sing 18 n n 
N9 C8 3AD sing 19 n y 
N9 C4 3AD sing 20 n y 
C8 N7 3AD doub 21 n y 
C8 H8 3AD sing 22 n n 
N7 C5 3AD sing 23 n y 
C5 C6 3AD sing 24 n y 
C5 C4 3AD doub 25 n y 
C6 N6 3AD sing 26 n n 
C6 N1 3AD doub 27 n y 
N6 HN61 3AD sing 28 n n 
N6 HN62 3AD sing 29 n n 
N1 C2 3AD sing 30 n y 
C2 N3 3AD doub 31 n y 
C2 H2 3AD sing 32 n n 
N3 C4 3AD sing 33 n y 
#
_atom_sites.entry_id                     1FA0 
_atom_sites.fract_transf_matrix[1][1]    0.01355 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 600 339 MN MN2 . 
D 2 MN A 1 601 340 MN MN2 . 
E 3 3AT A 1 604 556 3AT 3DA . 
F 4 3AD A 1 606 380 3AD 3DA . 
G 5 POP A 1 817 817 POP POP . 
H 2 MN B 1 602 339 MN MN2 . 
I 2 MN B 1 603 340 MN MN2 . 
J 3 3AT B 1 605 380 3AT 3DA . 
K 4 3AD B 1 607 380 3AD 3DA . 
L 6 HOH A 1 818 2 HOH HOH . 
L 6 HOH A 2 819 3 HOH HOH . 
L 6 HOH A 3 820 4 HOH HOH . 
L 6 HOH A 4 821 6 HOH HOH . 
L 6 HOH A 5 822 7 HOH HOH . 
L 6 HOH A 6 823 8 HOH HOH . 
L 6 HOH A 7 824 10 HOH HOH . 
L 6 HOH A 8 825 12 HOH HOH . 
L 6 HOH A 9 826 13 HOH HOH . 
L 6 HOH A 10 827 14 HOH HOH . 
L 6 HOH A 11 828 15 HOH HOH . 
L 6 HOH A 12 829 16 HOH HOH . 
L 6 HOH A 13 830 19 HOH HOH . 
L 6 HOH A 14 831 20 HOH HOH . 
L 6 HOH A 15 832 21 HOH HOH . 
L 6 HOH A 16 833 22 HOH HOH . 
L 6 HOH A 17 834 23 HOH HOH . 
L 6 HOH A 18 835 24 HOH HOH . 
L 6 HOH A 19 836 25 HOH HOH . 
L 6 HOH A 20 837 28 HOH HOH . 
L 6 HOH A 21 838 29 HOH HOH . 
L 6 HOH A 22 839 30 HOH HOH . 
L 6 HOH A 23 840 32 HOH HOH . 
L 6 HOH A 24 841 33 HOH HOH . 
L 6 HOH A 25 842 35 HOH HOH . 
L 6 HOH A 26 843 37 HOH HOH . 
L 6 HOH A 27 844 38 HOH HOH . 
L 6 HOH A 28 845 39 HOH HOH . 
L 6 HOH A 29 846 43 HOH HOH . 
L 6 HOH A 30 847 44 HOH HOH . 
L 6 HOH A 31 848 46 HOH HOH . 
L 6 HOH A 32 849 47 HOH HOH . 
L 6 HOH A 33 850 48 HOH HOH . 
L 6 HOH A 34 851 51 HOH HOH . 
L 6 HOH A 35 852 52 HOH HOH . 
L 6 HOH A 36 853 53 HOH HOH . 
L 6 HOH A 37 854 54 HOH HOH . 
L 6 HOH A 38 855 55 HOH HOH . 
L 6 HOH A 39 856 58 HOH HOH . 
L 6 HOH A 40 857 60 HOH HOH . 
L 6 HOH A 41 858 61 HOH HOH . 
L 6 HOH A 42 859 62 HOH HOH . 
L 6 HOH A 43 860 63 HOH HOH . 
L 6 HOH A 44 861 64 HOH HOH . 
L 6 HOH A 45 862 65 HOH HOH . 
L 6 HOH A 46 863 66 HOH HOH . 
L 6 HOH A 47 864 72 HOH HOH . 
L 6 HOH A 48 865 75 HOH HOH . 
L 6 HOH A 49 866 76 HOH HOH . 
L 6 HOH A 50 867 77 HOH HOH . 
L 6 HOH A 51 868 78 HOH HOH . 
L 6 HOH A 52 869 79 HOH HOH . 
L 6 HOH A 53 870 80 HOH HOH . 
L 6 HOH A 54 871 83 HOH HOH . 
M 6 HOH B 1 608 1 HOH HOH . 
M 6 HOH B 2 609 5 HOH HOH . 
M 6 HOH B 3 610 9 HOH HOH . 
M 6 HOH B 4 611 11 HOH HOH . 
M 6 HOH B 5 612 17 HOH HOH . 
M 6 HOH B 6 613 18 HOH HOH . 
M 6 HOH B 7 614 26 HOH HOH . 
M 6 HOH B 8 615 27 HOH HOH . 
M 6 HOH B 9 616 31 HOH HOH . 
M 6 HOH B 10 617 34 HOH HOH . 
M 6 HOH B 11 618 36 HOH HOH . 
M 6 HOH B 12 619 40 HOH HOH . 
M 6 HOH B 13 620 41 HOH HOH . 
M 6 HOH B 14 621 42 HOH HOH . 
M 6 HOH B 15 622 45 HOH HOH . 
M 6 HOH B 16 623 49 HOH HOH . 
M 6 HOH B 17 624 50 HOH HOH . 
M 6 HOH B 18 625 56 HOH HOH . 
M 6 HOH B 19 626 57 HOH HOH . 
M 6 HOH B 20 627 59 HOH HOH . 
M 6 HOH B 21 628 67 HOH HOH . 
M 6 HOH B 22 629 68 HOH HOH . 
M 6 HOH B 23 630 69 HOH HOH . 
M 6 HOH B 24 631 70 HOH HOH . 
M 6 HOH B 25 632 71 HOH HOH . 
M 6 HOH B 26 633 73 HOH HOH . 
M 6 HOH B 27 634 74 HOH HOH . 
M 6 HOH B 28 635 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' 3AD . . . F 4 81.841 32.497 69.293 0.79 79.21 ? O5' 3AD 606 A 1 
HETATM 2 C C5' 3AD . . . F 4 80.791 33.103 68.534 0.79 80.1 ? C5' 3AD 606 A 1 
HETATM 3 C C4' 3AD . . . F 4 79.429 32.65 69.002 0.79 81.2 ? C4' 3AD 606 A 1 
HETATM 4 O O4' 3AD . . . F 4 79.396 32.702 70.454 0.79 82.5 ? O4' 3AD 606 A 1 
HETATM 5 C C3' 3AD . . . F 4 78.266 33.508 68.524 0.79 81.46 ? C3' 3AD 606 A 1 
HETATM 6 C C2' 3AD . . . F 4 78.116 34.522 69.654 0.79 82.16 ? C2' 3AD 606 A 1 
HETATM 7 O O2' 3AD . . . F 4 76.798 35.013 69.759 0.79 81.66 ? O2' 3AD 606 A 1 
HETATM 8 C C1' 3AD . . . F 4 78.46 33.676 70.883 0.79 82.83 ? C1' 3AD 606 A 1 
HETATM 9 N N9 3AD . . . F 4 79.083 34.431 71.976 0.79 84.27 ? N9 3AD 606 A 1 
HETATM 10 C C8 3AD . . . F 4 80.19 34.047 72.698 0.79 84.82 ? C8 3AD 606 A 1 
HETATM 11 N N7 3AD . . . F 4 80.553 34.913 73.613 0.79 85.95 ? N7 3AD 606 A 1 
HETATM 12 C C5 3AD . . . F 4 79.623 35.939 73.493 0.79 85.94 ? C5 3AD 606 A 1 
HETATM 13 C C6 3AD . . . F 4 79.465 37.162 74.184 0.79 86.21 ? C6 3AD 606 A 1 
HETATM 14 N N6 3AD . . . F 4 80.273 37.566 75.172 0.79 87.49 ? N6 3AD 606 A 1 
HETATM 15 N N1 3AD . . . F 4 78.438 37.963 73.82 0.79 84.81 ? N1 3AD 606 A 1 
HETATM 16 C C2 3AD . . . F 4 77.632 37.556 72.833 0.79 84.68 ? C2 3AD 606 A 1 
HETATM 17 N N3 3AD . . . F 4 77.676 36.431 72.108 0.79 85.21 ? N3 3AD 606 A 1 
HETATM 18 C C4 3AD . . . F 4 78.708 35.655 72.492 0.79 85.3 ? C4 3AD 606 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#