data_1FAX # _model_server_result.job_id nfNEtueIvxc3ouKqqMeglA _model_server_result.datetime_utc '2024-12-21 11:48:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":265}' # _entry.id 1FAX # _exptl.entry_id 1FAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.526 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3R)-1-[(1Z)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FAX _cell.length_a 56.93 _cell.length_b 73.17 _cell.length_c 79.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 89 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf6 B SG CYS 46 L CYS 89 1_555 B SG CYS 57 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 B SG CYS 53 L CYS 96 1_555 B SG CYS 66 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf8 B SG CYS 68 L CYS 111 1_555 B SG CYS 81 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 C CA CA . A CA 1 1_555 A OD1 ASP 56 A ASP 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc2 C CA CA . A CA 1 1_555 A O ASN 58 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 C CA CA . A CA 1 1_555 A O ALA 61 A ALA 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 C CA CA . A CA 1 1_555 A OE2 GLU 66 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 C CA CA . A CA 1 1_555 A OE1 GLU 66 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? # _chem_comp.formula 'C26 H28 N4 O3' _chem_comp.formula_weight 444.526 _chem_comp.id DX9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3R)-1-[(1Z)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DX9056A # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 DX9 doub 83 n y C12 C8 DX9 sing 84 n y C12 H12 DX9 sing 85 n n C13 C11 DX9 sing 86 n y C13 C14 DX9 sing 87 n n C11 C10 DX9 doub 88 n y C11 H11 DX9 sing 89 n n C10 C7 DX9 sing 90 n y C10 H10 DX9 sing 91 n n C7 C6 DX9 doub 92 n y C7 C8 DX9 sing 93 n y C6 C5 DX9 sing 94 n y C6 H6 DX9 sing 95 n n C5 C4 DX9 doub 96 n y C5 H5 DX9 sing 97 n n C4 C9 DX9 sing 98 n y C4 C2 DX9 sing 99 n n C9 C8 DX9 doub 100 n y C9 H9 DX9 sing 101 n n C2 N2 DX9 doub 102 n n C2 N1 DX9 sing 103 n n C27 H227 DX9 sing 104 n n N2 HN21 DX9 sing 105 n n N1 HN12 DX9 sing 106 n n N1 HN11 DX9 sing 107 n n C14 C15 DX9 sing 108 n n C14 H141 DX9 sing 109 n n C14 H142 DX9 sing 110 n n C22 O23 DX9 doub 111 n n C22 O24 DX9 sing 112 n n C22 C15 DX9 sing 113 n n O24 HO4 DX9 sing 114 n n C15 C16 DX9 sing 115 n n C15 H15 DX9 sing 116 n n N28 C27 DX9 sing 117 n n N28 C29 DX9 sing 118 n n N28 C31 DX9 sing 119 n n C27 C26 DX9 sing 120 n n C27 H127 DX9 sing 121 n n C26 C30 DX9 sing 122 n n C26 O25 DX9 sing 123 n n C30 C29 DX9 sing 124 n n C30 H130 DX9 sing 125 n n C29 H129 DX9 sing 126 n n C31 N32 DX9 doub 127 n n C31 C33 DX9 sing 128 n n C29 H229 DX9 sing 129 n n N32 HN31 DX9 sing 130 n n C30 H230 DX9 sing 131 n n C33 H331 DX9 sing 132 n n C33 H332 DX9 sing 133 n n C33 H333 DX9 sing 134 n n C21 C20 DX9 doub 135 n y C21 C16 DX9 sing 136 n y C21 H21 DX9 sing 137 n n C20 C19 DX9 sing 138 n y C20 H20 DX9 sing 139 n n C17 C18 DX9 sing 140 n y C17 C16 DX9 doub 141 n y C17 H17 DX9 sing 142 n n C18 C19 DX9 doub 143 n y C18 H18 DX9 sing 144 n n C19 O25 DX9 sing 145 n n C26 H26 DX9 sing 146 n n # _atom_sites.entry_id 1FAX _atom_sites.fract_transf_matrix[1][1] 0.017565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1 1 CA CA . D 4 DX9 A 1 265 1 DX9 DX9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 DX9 . . . D 4 7.386 8.022 24.613 1 22.37 ? C12 DX9 265 A 1 HETATM 2 C C13 DX9 . . . D 4 6.851 8.569 23.463 1 28.08 ? C13 DX9 265 A 1 HETATM 3 C C11 DX9 . . . D 4 7.662 9.4 22.665 1 26.57 ? C11 DX9 265 A 1 HETATM 4 C C10 DX9 . . . D 4 8.947 9.753 23.093 1 22.08 ? C10 DX9 265 A 1 HETATM 5 C C7 DX9 . . . D 4 9.438 9.231 24.295 1 18.5 ? C7 DX9 265 A 1 HETATM 6 C C6 DX9 . . . D 4 10.72 9.551 24.743 1 15.06 ? C6 DX9 265 A 1 HETATM 7 C C5 DX9 . . . D 4 11.195 8.995 25.934 1 12.51 ? C5 DX9 265 A 1 HETATM 8 C C4 DX9 . . . D 4 10.425 8.072 26.662 1 13.11 ? C4 DX9 265 A 1 HETATM 9 C C9 DX9 . . . D 4 9.134 7.841 26.219 1 15.42 ? C9 DX9 265 A 1 HETATM 10 C C8 DX9 . . . D 4 8.649 8.348 25.043 1 18.95 ? C8 DX9 265 A 1 HETATM 11 C C2 DX9 . . . D 4 10.909 7.382 27.765 1 11.38 ? C2 DX9 265 A 1 HETATM 12 N N2 DX9 . . . D 4 10.105 6.526 28.4 1 6 ? N2 DX9 265 A 1 HETATM 13 N N1 DX9 . . . D 4 12.171 7.574 28.17 1 12.98 ? N1 DX9 265 A 1 HETATM 14 C C14 DX9 . . . D 4 5.4 8.247 23.148 1 34.91 ? C14 DX9 265 A 1 HETATM 15 C C22 DX9 . . . D 4 3.535 7.793 21.62 1 45 ? C22 DX9 265 A 1 HETATM 16 O O23 DX9 . . . D 4 2.982 6.709 21.826 1 46.93 ? O23 DX9 265 A 1 HETATM 17 O O24 DX9 . . . D 4 2.912 8.832 21.389 1 47.17 ? O24 DX9 265 A 1 HETATM 18 C C15 DX9 . . . D 4 5.058 7.904 21.703 1 41.16 ? C15 DX9 265 A 1 HETATM 19 N N28 DX9 . . . D 4 7.704 1.827 17.259 1 49.69 ? N28 DX9 265 A 1 HETATM 20 C C27 DX9 . . . D 4 7.452 2.944 18.16 1 48.75 ? C27 DX9 265 A 1 HETATM 21 C C26 DX9 . . . D 4 8.769 3.153 18.868 1 47.93 ? C26 DX9 265 A 1 HETATM 22 C C30 DX9 . . . D 4 9.344 1.79 18.795 1 47.51 ? C30 DX9 265 A 1 HETATM 23 C C29 DX9 . . . D 4 8.923 1.06 17.544 1 48.97 ? C29 DX9 265 A 1 HETATM 24 C C31 DX9 . . . D 4 6.874 1.556 16.257 1 49.91 ? C31 DX9 265 A 1 HETATM 25 N N32 DX9 . . . D 4 7.006 0.422 15.592 1 49.48 ? N32 DX9 265 A 1 HETATM 26 C C33 DX9 . . . D 4 5.701 2.45 15.853 1 50.04 ? C33 DX9 265 A 1 HETATM 27 C C21 DX9 . . . D 4 5.936 5.524 21.94 1 40.63 ? C21 DX9 265 A 1 HETATM 28 C C20 DX9 . . . D 4 6.821 4.521 21.567 1 42.58 ? C20 DX9 265 A 1 HETATM 29 C C17 DX9 . . . D 4 6.796 6.953 20.178 1 40.06 ? C17 DX9 265 A 1 HETATM 30 C C18 DX9 . . . D 4 7.678 5.948 19.802 1 42.62 ? C18 DX9 265 A 1 HETATM 31 C C19 DX9 . . . D 4 7.688 4.738 20.501 1 43.8 ? C19 DX9 265 A 1 HETATM 32 O O25 DX9 . . . D 4 8.612 3.688 20.139 1 46.89 ? O25 DX9 265 A 1 HETATM 33 C C16 DX9 . . . D 4 5.937 6.741 21.25 1 40.08 ? C16 DX9 265 A 1 HETATM 34 H HN21 DX9 . . . D 4 10.357 5.986 29.192 0 20 ? HN21 DX9 265 A 1 HETATM 35 H HN12 DX9 . . . D 4 12.739 8.216 27.651 0 20 ? HN12 DX9 265 A 1 HETATM 36 H HN11 DX9 . . . D 4 12.575 7.11 28.954 0 20 ? HN11 DX9 265 A 1 HETATM 37 H HN31 DX9 . . . D 4 7.88 -0.006 15.511 0 20 ? HN31 DX9 265 A 1 HETATM 38 H HN22 DX9 . . . D 4 9.142 6.472 28.096 0 20 ? HN22 DX9 265 A 1 HETATM 39 H HN32 DX9 . . . D 4 6.194 0.059 15.181 0 20 ? HN32 DX9 265 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #