data_1FB5 # _model_server_result.job_id JiTy2_wpe-YmfMGiFdWtyg _model_server_result.datetime_utc '2024-11-23 22:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 1FB5 # _exptl.entry_id 1FB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details Synthesized _entity.formula_weight 117.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NORVALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FB5 _cell.length_a 184.7 _cell.length_b 184.7 _cell.length_c 184.7 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id NVA _chem_comp.mon_nstd_flag n _chem_comp.name NORVALINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA NVA sing 237 n n N H NVA sing 238 n n N H2 NVA sing 239 n n CA CB NVA sing 240 n n CA C NVA sing 241 n n CA HA NVA sing 242 n n CB CG NVA sing 243 n n CB HB2 NVA sing 244 n n CB HB3 NVA sing 245 n n CG CD NVA sing 246 n n CG HG2 NVA sing 247 n n CG HG3 NVA sing 248 n n CD HD1 NVA sing 249 n n CD HD2 NVA sing 250 n n CD HD3 NVA sing 251 n n C O NVA doub 252 n n C OXT NVA sing 253 n n OXT HXT NVA sing 254 n n # _atom_sites.entry_id 1FB5 _atom_sites.fract_transf_matrix[1][1] 0.005414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NVA A 1 900 900 NVA NVA . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 3 3 HOH TIP . C 3 HOH A 3 4 4 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NVA . . . B 2 -13.262 -37.455 -19.057 1 78.78 ? N NVA 900 A 1 HETATM 2 C CA NVA . . . B 2 -13.963 -36.185 -19.208 1 78.39 ? CA NVA 900 A 1 HETATM 3 C CB NVA . . . B 2 -13.194 -35.071 -18.486 1 78.42 ? CB NVA 900 A 1 HETATM 4 C CG NVA . . . B 2 -13.98 -33.778 -18.315 1 78.07 ? CG NVA 900 A 1 HETATM 5 C CD NVA . . . B 2 -13.246 -32.788 -17.422 1 78.23 ? CD NVA 900 A 1 HETATM 6 C C NVA . . . B 2 -14.113 -35.841 -20.681 1 77.82 ? C NVA 900 A 1 HETATM 7 O O NVA . . . B 2 -13.608 -34.78 -21.095 1 78.36 ? O NVA 900 A 1 HETATM 8 O OXT NVA . . . B 2 -14.74 -36.636 -21.403 1 78.28 ? OXT NVA 900 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #