data_1FBC # _model_server_result.job_id VH42Po4VRq-kFzlNYub1eQ _model_server_result.datetime_utc '2024-11-18 13:37:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":336}' # _entry.id 1FBC # _exptl.entry_id 1FBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FBC _cell.length_a 131.4 _cell.length_b 131.4 _cell.length_c 68.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 97 A GLU 97 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc4 A OE2 GLU 280 A GLU 280 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc5 D O1P AHG . A AHG 336 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc6 D O2P AHG . A AHG 336 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc7 B OE1 GLU 97 B GLU 97 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc8 B OD2 ASP 118 B ASP 118 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc9 B OD1 ASP 121 B ASP 121 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc10 B OE2 GLU 280 B GLU 280 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc11 F O1P AHG . B AHG 336 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P AHG doub 1 n n P1 O2P AHG sing 2 n n P1 O3P AHG sing 3 n n P1 O1 AHG sing 4 n n O2P HOP2 AHG sing 5 n n O3P HOP3 AHG sing 6 n n O1 C1 AHG sing 7 n n C1 C2 AHG sing 8 n n C1 H11 AHG sing 9 n n C1 H12 AHG sing 10 n n C2 C3 AHG sing 11 n n C2 O5 AHG sing 12 n n C2 H2 AHG sing 13 n n C3 O3 AHG sing 14 n n C3 C4 AHG sing 15 n n C3 H3 AHG sing 16 n n O3 HO3 AHG sing 17 n n C4 O4 AHG sing 18 n n C4 C5 AHG sing 19 n n C4 H4 AHG sing 20 n n O4 HO4 AHG sing 21 n n C5 O5 AHG sing 22 n n C5 C6 AHG sing 23 n n C5 H5 AHG sing 24 n n C6 O6 AHG sing 25 n n C6 H61 AHG sing 26 n n C6 H62 AHG sing 27 n n O6 P2 AHG sing 28 n n P2 O4P AHG doub 29 n n P2 O5P AHG sing 30 n n P2 O6P AHG sing 31 n n O5P HOP5 AHG sing 32 n n O6P HOP6 AHG sing 33 n n # _atom_sites.entry_id 1FBC _atom_sites.fract_transf_matrix[1][1] 0.00761 _atom_sites.fract_transf_matrix[1][2] 0.004394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 341 341 MG MG . D 3 AHG A 1 336 336 AHG AHG . E 2 MG B 1 341 341 MG MG . F 3 AHG B 1 336 336 AHG AHG . G 4 HOH A 1 342 1 HOH HOH . G 4 HOH A 2 343 4 HOH HOH . G 4 HOH A 3 344 5 HOH HOH . G 4 HOH A 4 345 7 HOH HOH . G 4 HOH A 5 346 10 HOH HOH . G 4 HOH A 6 347 11 HOH HOH . G 4 HOH A 7 348 14 HOH HOH . G 4 HOH A 8 349 19 HOH HOH . G 4 HOH A 9 350 24 HOH HOH . G 4 HOH A 10 351 25 HOH HOH . G 4 HOH A 11 352 29 HOH HOH . G 4 HOH A 12 353 30 HOH HOH . G 4 HOH A 13 354 31 HOH HOH . G 4 HOH A 14 355 35 HOH HOH . G 4 HOH A 15 356 39 HOH HOH . G 4 HOH A 16 357 40 HOH HOH . G 4 HOH A 17 358 42 HOH HOH . G 4 HOH A 18 359 44 HOH HOH . G 4 HOH A 19 360 48 HOH HOH . G 4 HOH A 20 361 49 HOH HOH . G 4 HOH A 21 362 50 HOH HOH . G 4 HOH A 22 363 59 HOH HOH . G 4 HOH A 23 364 62 HOH HOH . G 4 HOH A 24 365 64 HOH HOH . G 4 HOH A 25 366 66 HOH HOH . G 4 HOH A 26 367 70 HOH HOH . G 4 HOH A 27 368 73 HOH HOH . G 4 HOH A 28 369 74 HOH HOH . G 4 HOH A 29 370 77 HOH HOH . G 4 HOH A 30 371 88 HOH HOH . G 4 HOH A 31 372 89 HOH HOH . G 4 HOH A 32 373 91 HOH HOH . G 4 HOH A 33 374 92 HOH HOH . G 4 HOH A 34 375 99 HOH HOH . G 4 HOH A 35 376 100 HOH HOH . G 4 HOH A 36 377 101 HOH HOH . G 4 HOH A 37 378 103 HOH HOH . G 4 HOH A 38 379 109 HOH HOH . G 4 HOH A 39 380 114 HOH HOH . G 4 HOH A 40 381 115 HOH HOH . G 4 HOH A 41 382 118 HOH HOH . G 4 HOH A 42 383 126 HOH HOH . G 4 HOH A 43 384 142 HOH HOH . G 4 HOH A 44 385 144 HOH HOH . G 4 HOH A 45 386 148 HOH HOH . G 4 HOH A 46 387 151 HOH HOH . G 4 HOH A 47 388 153 HOH HOH . G 4 HOH A 48 389 155 HOH HOH . G 4 HOH A 49 390 156 HOH HOH . G 4 HOH A 50 391 157 HOH HOH . G 4 HOH A 51 392 158 HOH HOH . G 4 HOH A 52 393 164 HOH HOH . G 4 HOH A 53 394 185 HOH HOH . H 4 HOH B 1 342 2 HOH HOH . H 4 HOH B 2 343 3 HOH HOH . H 4 HOH B 3 344 12 HOH HOH . H 4 HOH B 4 345 18 HOH HOH . H 4 HOH B 5 346 20 HOH HOH . H 4 HOH B 6 347 23 HOH HOH . H 4 HOH B 7 348 26 HOH HOH . H 4 HOH B 8 349 33 HOH HOH . H 4 HOH B 9 350 34 HOH HOH . H 4 HOH B 10 351 36 HOH HOH . H 4 HOH B 11 352 38 HOH HOH . H 4 HOH B 12 353 41 HOH HOH . H 4 HOH B 13 354 51 HOH HOH . H 4 HOH B 14 355 53 HOH HOH . H 4 HOH B 15 356 54 HOH HOH . H 4 HOH B 16 357 58 HOH HOH . H 4 HOH B 17 358 61 HOH HOH . H 4 HOH B 18 359 63 HOH HOH . H 4 HOH B 19 360 68 HOH HOH . H 4 HOH B 20 361 69 HOH HOH . H 4 HOH B 21 362 78 HOH HOH . H 4 HOH B 22 363 82 HOH HOH . H 4 HOH B 23 364 94 HOH HOH . H 4 HOH B 24 365 102 HOH HOH . H 4 HOH B 25 366 107 HOH HOH . H 4 HOH B 26 367 108 HOH HOH . H 4 HOH B 27 368 113 HOH HOH . H 4 HOH B 28 369 119 HOH HOH . H 4 HOH B 29 370 120 HOH HOH . H 4 HOH B 30 371 122 HOH HOH . H 4 HOH B 31 372 123 HOH HOH . H 4 HOH B 32 373 124 HOH HOH . H 4 HOH B 33 374 136 HOH HOH . H 4 HOH B 34 375 140 HOH HOH . H 4 HOH B 35 376 145 HOH HOH . H 4 HOH B 36 377 146 HOH HOH . H 4 HOH B 37 378 149 HOH HOH . H 4 HOH B 38 379 161 HOH HOH . H 4 HOH B 39 380 162 HOH HOH . H 4 HOH B 40 381 165 HOH HOH . H 4 HOH B 41 382 167 HOH HOH . H 4 HOH B 42 383 171 HOH HOH . H 4 HOH B 43 384 172 HOH HOH . H 4 HOH B 44 385 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHG . . . D 3 40.847 89.126 25.653 1 85.96 ? P1 AHG 336 A 1 HETATM 2 O O1P AHG . . . D 3 41.091 90.336 26.474 1 68.23 ? O1P AHG 336 A 1 HETATM 3 O O2P AHG . . . D 3 41.831 88.77 24.589 1 88.89 ? O2P AHG 336 A 1 HETATM 4 O O3P AHG . . . D 3 40.677 87.912 26.662 1 86 ? O3P AHG 336 A 1 HETATM 5 O O1 AHG . . . D 3 39.427 89.214 24.907 1 85.7 ? O1 AHG 336 A 1 HETATM 6 C C1 AHG . . . D 3 38.198 89.005 25.602 1 67.27 ? C1 AHG 336 A 1 HETATM 7 C C2 AHG . . . D 3 37.456 90.325 25.692 1 56.46 ? C2 AHG 336 A 1 HETATM 8 C C3 AHG . . . D 3 36.568 90.659 24.477 1 53.86 ? C3 AHG 336 A 1 HETATM 9 O O3 AHG . . . D 3 37.154 90.158 23.292 1 49.46 ? O3 AHG 336 A 1 HETATM 10 C C4 AHG . . . D 3 35.227 90.041 24.856 1 54.52 ? C4 AHG 336 A 1 HETATM 11 O O4 AHG . . . D 3 34.085 90.636 24.238 1 61.25 ? O4 AHG 336 A 1 HETATM 12 C C5 AHG . . . D 3 35.187 90.284 26.375 1 49.62 ? C5 AHG 336 A 1 HETATM 13 O O5 AHG . . . D 3 36.558 90.245 26.807 1 51.34 ? O5 AHG 336 A 1 HETATM 14 C C6 AHG . . . D 3 34.392 89.237 27.1 1 42.49 ? C6 AHG 336 A 1 HETATM 15 O O6 AHG . . . D 3 34.203 89.671 28.445 1 38.39 ? O6 AHG 336 A 1 HETATM 16 P P2 AHG . . . D 3 32.834 89.307 29.256 1 29.2 ? P2 AHG 336 A 1 HETATM 17 O O4P AHG . . . D 3 32.677 87.797 29.216 1 30.91 ? O4P AHG 336 A 1 HETATM 18 O O5P AHG . . . D 3 33.114 89.873 30.641 1 29.39 ? O5P AHG 336 A 1 HETATM 19 O O6P AHG . . . D 3 31.681 90.026 28.574 1 32.27 ? O6P AHG 336 A 1 HETATM 20 H HOP3 AHG . . . D 3 41.503 87.409 26.346 1 0 ? HOP3 AHG 336 A 1 HETATM 21 H HO3 AHG . . . D 3 37.931 90.741 23.109 1 0 ? HO3 AHG 336 A 1 HETATM 22 H HO4 AHG . . . D 3 33.274 90.233 24.632 1 0 ? HO4 AHG 336 A 1 HETATM 23 H HOP5 AHG . . . D 3 32.476 89.504 31.238 1 0 ? HOP5 AHG 336 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #