data_1FBD # _model_server_result.job_id QpJrq-Lf338jDpa5inhYww _model_server_result.datetime_utc '2024-11-13 22:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":336}' # _entry.id 1FBD # _exptl.entry_id 1FBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FBD _cell.length_a 131.6 _cell.length_b 131.6 _cell.length_c 68.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 D MN MN . A MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 A OD1 ASP 118 A ASP 118 1_555 D MN MN . A MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 A O LEU 120 A LEU 120 1_555 D MN MN . A MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 A OE1 GLU 280 A GLU 280 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc7 E O2P AHG . A AHG 336 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc8 E O1P AHG . A AHG 336 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 E O2P AHG . A AHG 336 1_555 D MN MN . A MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc10 B OE1 GLU 97 B GLU 97 1_555 F MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc11 B OE2 GLU 97 B GLU 97 1_555 G MN MN . B MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc12 B OD2 ASP 118 B ASP 118 1_555 F MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc13 B OD1 ASP 118 B ASP 118 1_555 G MN MN . B MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc14 B O LEU 120 B LEU 120 1_555 G MN MN . B MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc15 B OE1 GLU 280 B GLU 280 1_555 F MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc16 H O1P AHG . B AHG 336 1_555 F MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc17 H O2P AHG . B AHG 336 1_555 G MN MN . B MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P AHG doub 1 n n P1 O2P AHG sing 2 n n P1 O3P AHG sing 3 n n P1 O1 AHG sing 4 n n O2P HOP2 AHG sing 5 n n O3P HOP3 AHG sing 6 n n O1 C1 AHG sing 7 n n C1 C2 AHG sing 8 n n C1 H11 AHG sing 9 n n C1 H12 AHG sing 10 n n C2 C3 AHG sing 11 n n C2 O5 AHG sing 12 n n C2 H2 AHG sing 13 n n C3 O3 AHG sing 14 n n C3 C4 AHG sing 15 n n C3 H3 AHG sing 16 n n O3 HO3 AHG sing 17 n n C4 O4 AHG sing 18 n n C4 C5 AHG sing 19 n n C4 H4 AHG sing 20 n n O4 HO4 AHG sing 21 n n C5 O5 AHG sing 22 n n C5 C6 AHG sing 23 n n C5 H5 AHG sing 24 n n C6 O6 AHG sing 25 n n C6 H61 AHG sing 26 n n C6 H62 AHG sing 27 n n O6 P2 AHG sing 28 n n P2 O4P AHG doub 29 n n P2 O5P AHG sing 30 n n P2 O6P AHG sing 31 n n O5P HOP5 AHG sing 32 n n O6P HOP6 AHG sing 33 n n # _atom_sites.entry_id 1FBD _atom_sites.fract_transf_matrix[1][1] 0.007599 _atom_sites.fract_transf_matrix[1][2] 0.004387 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 341 341 MN MN . D 2 MN A 1 342 342 MN MN . E 3 AHG A 1 336 336 AHG AHG . F 2 MN B 1 341 341 MN MN . G 2 MN B 1 342 342 MN MN . H 3 AHG B 1 336 336 AHG AHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHG . . . H 3 18.097 80.88 9.592 1 79.79 ? P1 AHG 336 B 1 HETATM 2 O O1P AHG . . . H 3 16.901 80.146 10.074 1 66.68 ? O1P AHG 336 B 1 HETATM 3 O O2P AHG . . . H 3 18.992 80.239 8.584 1 65.35 ? O2P AHG 336 B 1 HETATM 4 O O3P AHG . . . H 3 17.574 82.277 9.045 1 78.9 ? O3P AHG 336 B 1 HETATM 5 O O1 AHG . . . H 3 19.059 81.273 10.809 1 75.28 ? O1 AHG 336 B 1 HETATM 6 C C1 AHG . . . H 3 18.696 82.288 11.739 1 59.78 ? C1 AHG 336 B 1 HETATM 7 C C2 AHG . . . H 3 18.101 81.628 12.984 1 49.59 ? C2 AHG 336 B 1 HETATM 8 C C3 AHG . . . H 3 19.102 81.348 14.133 1 43.36 ? C3 AHG 336 B 1 HETATM 9 O O3 AHG . . . H 3 20.38 81.017 13.613 1 52.05 ? O3 AHG 336 B 1 HETATM 10 C C4 AHG . . . H 3 19.039 82.635 14.945 1 47.57 ? C4 AHG 336 B 1 HETATM 11 O O4 AHG . . . H 3 19.4 82.52 16.324 1 50.73 ? O4 AHG 336 B 1 HETATM 12 C C5 AHG . . . H 3 17.548 83.018 14.82 1 43.51 ? C5 AHG 336 B 1 HETATM 13 O O5 AHG . . . H 3 17.135 82.531 13.534 1 45.67 ? O5 AHG 336 B 1 HETATM 14 C C6 AHG . . . H 3 17.332 84.493 14.906 1 41.16 ? C6 AHG 336 B 1 HETATM 15 O O6 AHG . . . H 3 16.41 84.759 15.966 1 42.95 ? O6 AHG 336 B 1 HETATM 16 P P2 AHG . . . H 3 16.434 86.2 16.727 1 37.87 ? P2 AHG 336 B 1 HETATM 17 O O4P AHG . . . H 3 17.665 86.937 16.239 1 45.14 ? O4P AHG 336 B 1 HETATM 18 O O5P AHG . . . H 3 15.114 86.82 16.293 1 47.69 ? O5P AHG 336 B 1 HETATM 19 O O6P AHG . . . H 3 16.477 85.942 18.223 1 45.85 ? O6P AHG 336 B 1 HETATM 20 H HOP3 AHG . . . H 3 16.728 82.191 8.483 1 0 ? HOP3 AHG 336 B 1 HETATM 21 H HO3 AHG . . . H 3 20.379 80.543 12.736 1 0 ? HO3 AHG 336 B 1 HETATM 22 H HO4 AHG . . . H 3 19.535 83.502 16.627 1 0 ? HO4 AHG 336 B 1 HETATM 23 H HOP5 AHG . . . H 3 15.069 87.692 16.597 1 0 ? HOP5 AHG 336 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #