data_1FBE # _model_server_result.job_id '_LsXAzeFmnT9WkOWxF4rKA' _model_server_result.datetime_utc '2024-10-20 19:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":336}' # _entry.id 1FBE # _exptl.entry_id 1FBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FBE _cell.length_a 132 _cell.length_b 132 _cell.length_c 67.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 D ZN ZN . A ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 C ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 A OD1 ASP 118 A ASP 118 1_555 D ZN ZN . A ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc5 A O LEU 120 A LEU 120 1_555 D ZN ZN . A ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 A OE2 GLU 280 A GLU 280 1_555 C ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 E O1P AHG . A AHG 336 1_555 C ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 E O2P AHG . A AHG 336 1_555 D ZN ZN . A ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc9 B OE2 GLU 97 B GLU 97 1_555 F ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc10 B OE1 GLU 97 B GLU 97 1_555 G ZN ZN . B ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc11 B OD2 ASP 118 B ASP 118 1_555 F ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc12 B OD1 ASP 118 B ASP 118 1_555 G ZN ZN . B ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc13 B O LEU 120 B LEU 120 1_555 G ZN ZN . B ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc14 B OE2 GLU 280 B GLU 280 1_555 F ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc15 H O1P AHG . B AHG 336 1_555 F ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc16 H O2P AHG . B AHG 336 1_555 G ZN ZN . B ZN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-glucitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P AHG doub 1 n n P1 O2P AHG sing 2 n n P1 O3P AHG sing 3 n n P1 O1 AHG sing 4 n n O2P HOP2 AHG sing 5 n n O3P HOP3 AHG sing 6 n n O1 C1 AHG sing 7 n n C1 C2 AHG sing 8 n n C1 H11 AHG sing 9 n n C1 H12 AHG sing 10 n n C2 C3 AHG sing 11 n n C2 O5 AHG sing 12 n n C2 H2 AHG sing 13 n n C3 O3 AHG sing 14 n n C3 C4 AHG sing 15 n n C3 H3 AHG sing 16 n n O3 HO3 AHG sing 17 n n C4 O4 AHG sing 18 n n C4 C5 AHG sing 19 n n C4 H4 AHG sing 20 n n O4 HO4 AHG sing 21 n n C5 O5 AHG sing 22 n n C5 C6 AHG sing 23 n n C5 H5 AHG sing 24 n n C6 O6 AHG sing 25 n n C6 H61 AHG sing 26 n n C6 H62 AHG sing 27 n n O6 P2 AHG sing 28 n n P2 O4P AHG doub 29 n n P2 O5P AHG sing 30 n n P2 O6P AHG sing 31 n n O5P HOP5 AHG sing 32 n n O6P HOP6 AHG sing 33 n n # _atom_sites.entry_id 1FBE _atom_sites.fract_transf_matrix[1][1] 0.007576 _atom_sites.fract_transf_matrix[1][2] 0.004374 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 341 341 ZN ZN . D 2 ZN A 1 342 342 ZN ZN . E 3 AHG A 1 336 336 AHG AHG . F 2 ZN B 1 341 341 ZN ZN . G 2 ZN B 1 342 342 ZN ZN . H 3 AHG B 1 336 336 AHG AHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHG . . . H 3 17.833 81.796 9.571 1 77.99 ? P1 AHG 336 B 1 HETATM 2 O O1P AHG . . . H 3 16.655 80.951 9.891 1 74.23 ? O1P AHG 336 B 1 HETATM 3 O O2P AHG . . . H 3 18.655 81.481 8.369 1 71.66 ? O2P AHG 336 B 1 HETATM 4 O O3P AHG . . . H 3 17.302 83.294 9.492 1 72.92 ? O3P AHG 336 B 1 HETATM 5 O O1 AHG . . . H 3 18.873 81.807 10.783 1 72.77 ? O1 AHG 336 B 1 HETATM 6 C C1 AHG . . . H 3 18.787 82.783 11.816 1 62.37 ? C1 AHG 336 B 1 HETATM 7 C C2 AHG . . . H 3 18.187 82.146 13.055 1 56.15 ? C2 AHG 336 B 1 HETATM 8 C C3 AHG . . . H 3 19.146 82.01 14.26 1 54.66 ? C3 AHG 336 B 1 HETATM 9 O O3 AHG . . . H 3 20.462 81.76 13.802 1 60.26 ? O3 AHG 336 B 1 HETATM 10 C C4 AHG . . . H 3 18.947 83.34 14.995 1 55.74 ? C4 AHG 336 B 1 HETATM 11 O O4 AHG . . . H 3 19.245 83.32 16.395 1 58.48 ? O4 AHG 336 B 1 HETATM 12 C C5 AHG . . . H 3 17.438 83.587 14.78 1 53.42 ? C5 AHG 336 B 1 HETATM 13 O O5 AHG . . . H 3 17.124 83.001 13.51 1 54.66 ? O5 AHG 336 B 1 HETATM 14 C C6 AHG . . . H 3 17.082 85.05 14.779 1 52 ? C6 AHG 336 B 1 HETATM 15 O O6 AHG . . . H 3 16.29 85.313 15.941 1 51.7 ? O6 AHG 336 B 1 HETATM 16 P P2 AHG . . . H 3 16.523 86.67 16.824 1 49.85 ? P2 AHG 336 B 1 HETATM 17 O O4P AHG . . . H 3 17.5 87.55 16.061 1 49.37 ? O4P AHG 336 B 1 HETATM 18 O O5P AHG . . . H 3 15.109 87.235 16.926 1 53.38 ? O5P AHG 336 B 1 HETATM 19 O O6P AHG . . . H 3 17.067 86.255 18.184 1 47.06 ? O6P AHG 336 B 1 HETATM 20 H HOP3 AHG . . . H 3 16.563 83.367 8.85 1 0 ? HOP3 AHG 336 B 1 HETATM 21 H HO3 AHG . . . H 3 20.496 81.12 13.106 1 0 ? HO3 AHG 336 B 1 HETATM 22 H HO4 AHG . . . H 3 19.104 84.289 16.728 1 0 ? HO4 AHG 336 B 1 HETATM 23 H HOP5 AHG . . . H 3 15.131 88.062 17.328 1 0 ? HOP5 AHG 336 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #