data_1FBF # _model_server_result.job_id T3aF-bsjyD4v-FeFL1fNzQ _model_server_result.datetime_utc '2024-11-18 13:47:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":336}' # _entry.id 1FBF # _exptl.entry_id 1FBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-mannitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FBF _cell.length_a 131.4 _cell.length_b 131.4 _cell.length_c 69.2 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 97 A GLU 97 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc4 A OE1 GLU 280 A GLU 280 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc5 D O1P AHM . A AHM 336 1_555 C MG MG . A MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc6 B OE2 GLU 97 B GLU 97 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc7 B OD2 ASP 118 B ASP 118 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 B OD1 ASP 121 B ASP 121 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc9 B OE2 GLU 280 B GLU 280 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc10 F O1P AHM . B AHM 336 1_555 E MG MG . B MG 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHM _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-mannitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2,5-ANHYDROMANNITOL-1,6-DIPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P AHM doub 1 n n P1 O2P AHM sing 2 n n P1 O3P AHM sing 3 n n P1 O1 AHM sing 4 n n O2P HOP2 AHM sing 5 n n O3P HOP3 AHM sing 6 n n O1 C1 AHM sing 7 n n C1 C2 AHM sing 8 n n C1 H11 AHM sing 9 n n C1 H12 AHM sing 10 n n C2 C3 AHM sing 11 n n C2 O5 AHM sing 12 n n C2 H2 AHM sing 13 n n C3 O3 AHM sing 14 n n C3 C4 AHM sing 15 n n C3 H3 AHM sing 16 n n O3 HO3 AHM sing 17 n n C4 O4 AHM sing 18 n n C4 C5 AHM sing 19 n n C4 H4 AHM sing 20 n n O4 HO4 AHM sing 21 n n C5 O5 AHM sing 22 n n C5 C6 AHM sing 23 n n C5 H5 AHM sing 24 n n C6 O6 AHM sing 25 n n C6 H61 AHM sing 26 n n C6 H62 AHM sing 27 n n O6 P2 AHM sing 28 n n P2 O4P AHM doub 29 n n P2 O5P AHM sing 30 n n P2 O6P AHM sing 31 n n O5P HOP5 AHM sing 32 n n O6P HOP6 AHM sing 33 n n # _atom_sites.entry_id 1FBF _atom_sites.fract_transf_matrix[1][1] 0.00761 _atom_sites.fract_transf_matrix[1][2] 0.004394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 341 341 MG MG . D 3 AHM A 1 336 336 AHM AHM . E 2 MG B 1 341 341 MG MG . F 3 AHM B 1 336 336 AHM AHM . G 4 HOH A 1 342 1 HOH HOH . G 4 HOH A 2 343 2 HOH HOH . G 4 HOH A 3 344 3 HOH HOH . G 4 HOH A 4 345 8 HOH HOH . G 4 HOH A 5 346 9 HOH HOH . G 4 HOH A 6 347 13 HOH HOH . G 4 HOH A 7 348 16 HOH HOH . G 4 HOH A 8 349 17 HOH HOH . G 4 HOH A 9 350 18 HOH HOH . G 4 HOH A 10 351 19 HOH HOH . G 4 HOH A 11 352 22 HOH HOH . G 4 HOH A 12 353 24 HOH HOH . G 4 HOH A 13 354 25 HOH HOH . G 4 HOH A 14 355 27 HOH HOH . G 4 HOH A 15 356 28 HOH HOH . G 4 HOH A 16 357 29 HOH HOH . G 4 HOH A 17 358 31 HOH HOH . G 4 HOH A 18 359 33 HOH HOH . G 4 HOH A 19 360 34 HOH HOH . G 4 HOH A 20 361 35 HOH HOH . G 4 HOH A 21 362 36 HOH HOH . G 4 HOH A 22 363 37 HOH HOH . G 4 HOH A 23 364 38 HOH HOH . G 4 HOH A 24 365 39 HOH HOH . G 4 HOH A 25 366 40 HOH HOH . G 4 HOH A 26 367 42 HOH HOH . G 4 HOH A 27 368 43 HOH HOH . H 4 HOH B 1 342 4 HOH HOH . H 4 HOH B 2 343 5 HOH HOH . H 4 HOH B 3 344 6 HOH HOH . H 4 HOH B 4 345 7 HOH HOH . H 4 HOH B 5 346 10 HOH HOH . H 4 HOH B 6 347 11 HOH HOH . H 4 HOH B 7 348 12 HOH HOH . H 4 HOH B 8 349 14 HOH HOH . H 4 HOH B 9 350 15 HOH HOH . H 4 HOH B 10 351 20 HOH HOH . H 4 HOH B 11 352 21 HOH HOH . H 4 HOH B 12 353 23 HOH HOH . H 4 HOH B 13 354 26 HOH HOH . H 4 HOH B 14 355 30 HOH HOH . H 4 HOH B 15 356 32 HOH HOH . H 4 HOH B 16 357 41 HOH HOH . H 4 HOH B 17 358 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHM . . . F 3 17.144 81.628 10.098 1 66.61 ? P1 AHM 336 B 1 HETATM 2 O O1P AHM . . . F 3 17.43 80.338 9.41 1 59 ? O1P AHM 336 B 1 HETATM 3 O O2P AHM . . . F 3 18.285 82.476 10.554 1 69.04 ? O2P AHM 336 B 1 HETATM 4 O O3P AHM . . . F 3 16.2 82.461 9.116 1 68.4 ? O3P AHM 336 B 1 HETATM 5 O O1 AHM . . . F 3 16.234 81.402 11.41 1 57.05 ? O1 AHM 336 B 1 HETATM 6 C C1 AHM . . . F 3 16.773 80.881 12.635 1 39.75 ? C1 AHM 336 B 1 HETATM 7 C C2 AHM . . . F 3 17.794 81.862 13.187 1 25.09 ? C2 AHM 336 B 1 HETATM 8 C C3 AHM . . . F 3 19 81.205 13.91 1 22.11 ? C3 AHM 336 B 1 HETATM 9 O O3 AHM . . . F 3 20.197 81.577 13.266 1 34.11 ? O3 AHM 336 B 1 HETATM 10 C C4 AHM . . . F 3 18.867 81.667 15.389 1 18.17 ? C4 AHM 336 B 1 HETATM 11 O O4 AHM . . . F 3 19.069 80.649 16.372 1 18.34 ? O4 AHM 336 B 1 HETATM 12 C C5 AHM . . . F 3 17.423 82.174 15.462 1 18.22 ? C5 AHM 336 B 1 HETATM 13 O O5 AHM . . . F 3 17.142 82.665 14.167 1 20.25 ? O5 AHM 336 B 1 HETATM 14 C C6 AHM . . . F 3 17.254 83.263 16.486 1 19.45 ? C6 AHM 336 B 1 HETATM 15 O O6 AHM . . . F 3 17.07 84.504 15.802 1 24.18 ? O6 AHM 336 B 1 HETATM 16 P P2 AHM . . . F 3 16.337 85.77 16.536 1 22.99 ? P2 AHM 336 B 1 HETATM 17 O O4P AHM . . . F 3 16.708 87.014 15.752 1 21.72 ? O4P AHM 336 B 1 HETATM 18 O O5P AHM . . . F 3 14.873 85.385 16.446 1 28.65 ? O5P AHM 336 B 1 HETATM 19 O O6P AHM . . . F 3 16.82 85.829 17.98 1 12.32 ? O6P AHM 336 B 1 HETATM 20 H HOP3 AHM . . . F 3 16.543 82.61 8.314 1 0 ? HOP3 AHM 336 B 1 HETATM 21 H HO3 AHM . . . F 3 19.956 82.04 12.494 1 0 ? HO3 AHM 336 B 1 HETATM 22 H HO4 AHM . . . F 3 19.103 81.054 17.201 1 0 ? HO4 AHM 336 B 1 HETATM 23 H HOP5 AHM . . . F 3 14.42 86.051 15.973 1 0 ? HOP5 AHM 336 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #