data_1FBG # _model_server_result.job_id nWdNRJZttvha-j-7sId7aA _model_server_result.datetime_utc '2024-11-29 12:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":336}' # _entry.id 1FBG # _exptl.entry_id 1FBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5-anhydro-1,6-di-O-phosphono-D-mannitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FBG _cell.length_a 132 _cell.length_b 132 _cell.length_c 67.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 A OE2 GLU 280 A GLU 280 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc5 D O1P AHM . A AHM 336 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc6 B OE2 GLU 97 B GLU 97 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc7 B OD2 ASP 118 B ASP 118 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc8 B OD1 ASP 121 B ASP 121 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc9 B OE2 GLU 280 B GLU 280 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc10 F O1P AHM . B AHM 336 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc11 F O2P AHM . B AHM 336 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'C6 H14 O11 P2' _chem_comp.formula_weight 324.116 _chem_comp.id AHM _chem_comp.mon_nstd_flag . _chem_comp.name 2,5-anhydro-1,6-di-O-phosphono-D-mannitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2,5-ANHYDROMANNITOL-1,6-DIPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P AHM doub 1 n n P1 O2P AHM sing 2 n n P1 O3P AHM sing 3 n n P1 O1 AHM sing 4 n n O2P HOP2 AHM sing 5 n n O3P HOP3 AHM sing 6 n n O1 C1 AHM sing 7 n n C1 C2 AHM sing 8 n n C1 H11 AHM sing 9 n n C1 H12 AHM sing 10 n n C2 C3 AHM sing 11 n n C2 O5 AHM sing 12 n n C2 H2 AHM sing 13 n n C3 O3 AHM sing 14 n n C3 C4 AHM sing 15 n n C3 H3 AHM sing 16 n n O3 HO3 AHM sing 17 n n C4 O4 AHM sing 18 n n C4 C5 AHM sing 19 n n C4 H4 AHM sing 20 n n O4 HO4 AHM sing 21 n n C5 O5 AHM sing 22 n n C5 C6 AHM sing 23 n n C5 H5 AHM sing 24 n n C6 O6 AHM sing 25 n n C6 H61 AHM sing 26 n n C6 H62 AHM sing 27 n n O6 P2 AHM sing 28 n n P2 O4P AHM doub 29 n n P2 O5P AHM sing 30 n n P2 O6P AHM sing 31 n n O5P HOP5 AHM sing 32 n n O6P HOP6 AHM sing 33 n n # _atom_sites.entry_id 1FBG _atom_sites.fract_transf_matrix[1][1] 0.007576 _atom_sites.fract_transf_matrix[1][2] 0.004374 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 341 341 MN MN . D 3 AHM A 1 336 336 AHM AHM . E 2 MN B 1 341 341 MN MN . F 3 AHM B 1 336 336 AHM AHM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AHM . . . D 3 41.982 89.302 25.227 1 96.58 ? P1 AHM 336 A 1 HETATM 2 O O1P AHM . . . D 3 43.231 90.027 25.547 1 71.67 ? O1P AHM 336 A 1 HETATM 3 O O2P AHM . . . D 3 41.409 89.461 23.867 1 95.01 ? O2P AHM 336 A 1 HETATM 4 O O3P AHM . . . D 3 42.245 87.765 25.534 1 93.9 ? O3P AHM 336 A 1 HETATM 5 O O1 AHM . . . D 3 40.791 89.722 26.225 1 94.47 ? O1 AHM 336 A 1 HETATM 6 C C1 AHM . . . D 3 39.928 90.813 25.927 1 85.8 ? C1 AHM 336 A 1 HETATM 7 C C2 AHM . . . D 3 38.497 90.3 25.929 1 78.85 ? C2 AHM 336 A 1 HETATM 8 C C3 AHM . . . D 3 37.574 90.934 24.893 1 73.02 ? C3 AHM 336 A 1 HETATM 9 O O3 AHM . . . D 3 37.762 90.293 23.658 1 79.35 ? O3 AHM 336 A 1 HETATM 10 C C4 AHM . . . D 3 36.19 90.748 25.525 1 72.44 ? C4 AHM 336 A 1 HETATM 11 O O4 AHM . . . D 3 35.191 91.675 25.104 1 59.8 ? O4 AHM 336 A 1 HETATM 12 C C5 AHM . . . D 3 36.493 90.947 27.036 1 70.32 ? C5 AHM 336 A 1 HETATM 13 O O5 AHM . . . D 3 37.894 90.643 27.189 1 78.38 ? O5 AHM 336 A 1 HETATM 14 C C6 AHM . . . D 3 35.665 90.043 27.899 1 71.49 ? C6 AHM 336 A 1 HETATM 15 O O6 AHM . . . D 3 34.356 90.598 28.009 1 54 ? O6 AHM 336 A 1 HETATM 16 P P2 AHM . . . D 3 33.324 90.068 29.151 1 46.71 ? P2 AHM 336 A 1 HETATM 17 O O4P AHM . . . D 3 32.097 90.968 29.11 1 27.98 ? O4P AHM 336 A 1 HETATM 18 O O5P AHM . . . D 3 33.066 88.638 28.712 1 27.4 ? O5P AHM 336 A 1 HETATM 19 O O6P AHM . . . D 3 34.04 90.135 30.486 1 39.48 ? O6P AHM 336 A 1 HETATM 20 H HOP3 AHM . . . D 3 42.246 87.374 24.603 1 0 ? HOP3 AHM 336 A 1 HETATM 21 H HO3 AHM . . . D 3 38.679 90.514 23.32 1 0 ? HO3 AHM 336 A 1 HETATM 22 H HO4 AHM . . . D 3 34.393 91.514 25.724 1 0 ? HO4 AHM 336 A 1 HETATM 23 H HOP5 AHM . . . D 3 32.469 88.302 29.286 1 0 ? HOP5 AHM 336 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #