data_1FBG
#
_model_server_result.job_id            l3rjvgXZwitqSyCpffdpCw 
_model_server_result.datetime_utc      '2024-10-20 19:32:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fbg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":336}' 
#
_entry.id    1FBG 
#
_exptl.entry_id    1FBG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.116 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5-anhydro-1,6-di-O-phosphono-D-mannitol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1FBG 
_cell.length_a            132 
_cell.length_b            132 
_cell.length_c            67.4 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FBG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc4 A OE2 GLU 280 A GLU 280 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc5 D O1P AHM . A AHM 336 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc6 B OE2 GLU 97 B GLU 97 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc7 B OD2 ASP 118 B ASP 118 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc8 B OD1 ASP 121 B ASP 121 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc9 B OE2 GLU 280 B GLU 280 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc10 F O1P AHM . B AHM 336 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc11 F O2P AHM . B AHM 336 1_555 E MN MN . B MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
#
_chem_comp.formula           'C6 H14 O11 P2' 
_chem_comp.formula_weight    324.116 
_chem_comp.id                AHM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5-anhydro-1,6-di-O-phosphono-D-mannitol 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     2,5-ANHYDROMANNITOL-1,6-DIPHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1P AHM doub 1 n n 
P1 O2P AHM sing 2 n n 
P1 O3P AHM sing 3 n n 
P1 O1 AHM sing 4 n n 
O2P HOP2 AHM sing 5 n n 
O3P HOP3 AHM sing 6 n n 
O1 C1 AHM sing 7 n n 
C1 C2 AHM sing 8 n n 
C1 H11 AHM sing 9 n n 
C1 H12 AHM sing 10 n n 
C2 C3 AHM sing 11 n n 
C2 O5 AHM sing 12 n n 
C2 H2 AHM sing 13 n n 
C3 O3 AHM sing 14 n n 
C3 C4 AHM sing 15 n n 
C3 H3 AHM sing 16 n n 
O3 HO3 AHM sing 17 n n 
C4 O4 AHM sing 18 n n 
C4 C5 AHM sing 19 n n 
C4 H4 AHM sing 20 n n 
O4 HO4 AHM sing 21 n n 
C5 O5 AHM sing 22 n n 
C5 C6 AHM sing 23 n n 
C5 H5 AHM sing 24 n n 
C6 O6 AHM sing 25 n n 
C6 H61 AHM sing 26 n n 
C6 H62 AHM sing 27 n n 
O6 P2 AHM sing 28 n n 
P2 O4P AHM doub 29 n n 
P2 O5P AHM sing 30 n n 
P2 O6P AHM sing 31 n n 
O5P HOP5 AHM sing 32 n n 
O6P HOP6 AHM sing 33 n n 
#
_atom_sites.entry_id                     1FBG 
_atom_sites.fract_transf_matrix[1][1]    0.007576 
_atom_sites.fract_transf_matrix[1][2]    0.004374 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008748 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 341 341 MN MN . 
D 3 AHM A 1 336 336 AHM AHM . 
E 2 MN B 1 341 341 MN MN . 
F 3 AHM B 1 336 336 AHM AHM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 AHM . . . F 3 18.012 81.323 9.539 1 110.81 ? P1 AHM 336 B 1 
HETATM 2 O O1P AHM . . . F 3 16.766 80.987 8.831 1 93.67 ? O1P AHM 336 B 1 
HETATM 3 O O2P AHM . . . F 3 19.291 80.739 9.05 1 113.64 ? O2P AHM 336 B 1 
HETATM 4 O O3P AHM . . . F 3 18.111 82.919 9.571 1 107.11 ? O3P AHM 336 B 1 
HETATM 5 O O1 AHM . . . F 3 17.914 80.908 11.079 1 94.81 ? O1 AHM 336 B 1 
HETATM 6 C C1 AHM . . . F 3 17.19 81.712 12.008 1 63.9 ? C1 AHM 336 B 1 
HETATM 7 C C2 AHM . . . F 3 18.174 82.399 12.951 1 48.41 ? C2 AHM 336 B 1 
HETATM 8 C C3 AHM . . . F 3 19.017 81.455 13.817 1 43.62 ? C3 AHM 336 B 1 
HETATM 9 O O3 AHM . . . F 3 20.116 80.993 13.064 1 46.39 ? O3 AHM 336 B 1 
HETATM 10 C C4 AHM . . . F 3 19.358 82.336 15.021 1 42.86 ? C4 AHM 336 B 1 
HETATM 11 O O4 AHM . . . F 3 19.646 81.637 16.245 1 26.81 ? O4 AHM 336 B 1 
HETATM 12 C C5 AHM . . . F 3 18.059 83.161 15.182 1 42.19 ? C5 AHM 336 B 1 
HETATM 13 O O5 AHM . . . F 3 17.421 83.159 13.889 1 47.29 ? O5 AHM 336 B 1 
HETATM 14 C C6 AHM . . . F 3 18.329 84.565 15.622 1 45.57 ? C6 AHM 336 B 1 
HETATM 15 O O6 AHM . . . F 3 17.231 85.383 15.22 1 46.52 ? O6 AHM 336 B 1 
HETATM 16 P P2 AHM . . . F 3 16.521 86.4 16.274 1 60.1 ? P2 AHM 336 B 1 
HETATM 17 O O4P AHM . . . F 3 16.512 87.774 15.631 1 59.92 ? O4P AHM 336 B 1 
HETATM 18 O O5P AHM . . . F 3 15.15 85.776 16.444 1 64.63 ? O5P AHM 336 B 1 
HETATM 19 O O6P AHM . . . F 3 17.32 86.375 17.57 1 46.1 ? O6P AHM 336 B 1 
HETATM 20 H HOP3 AHM . . . F 3 18.985 83.138 9.053 1 0 ? HOP3 AHM 336 B 1 
HETATM 21 H HO3 AHM . . . F 3 19.612 80.56 12.227 1 0 ? HO3 AHM 336 B 1 
HETATM 22 H HO4 AHM . . . F 3 19.478 82.31 16.965 1 0 ? HO4 AHM 336 B 1 
HETATM 23 H HOP5 AHM . . . F 3 14.704 86.254 17.145 1 0 ? HOP5 AHM 336 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#