data_1FBM # _model_server_result.job_id q92Lj6Tdg5rQWkNg9vniug _model_server_result.datetime_utc '2024-12-26 14:21:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":951}' # _entry.id 1FBM # _exptl.entry_id 1FBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.84 _cell.angle_gamma 90 _cell.entry_id 1FBM _cell.length_a 38.47 _cell.length_b 49.47 _cell.length_c 54.98 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 68 1_555 E SG CYS 45 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 45 A CYS 71 1_555 B SG CYS 42 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 45 B CYS 71 1_555 C SG CYS 42 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 45 C CYS 71 1_555 D SG CYS 42 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 D SG CYS 45 D CYS 71 1_555 E SG CYS 42 E CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 277 n n C1 C6 RTL sing 278 n n C1 C16 RTL sing 279 n n C1 C17 RTL sing 280 n n C2 C3 RTL sing 281 n n C2 H21 RTL sing 282 n n C2 H22 RTL sing 283 n n C3 C4 RTL sing 284 n n C3 H31 RTL sing 285 n n C3 H32 RTL sing 286 n n C4 C5 RTL sing 287 n n C4 H41 RTL sing 288 n n C4 H42 RTL sing 289 n n C5 C6 RTL doub 290 n n C5 C18 RTL sing 291 n n C6 C7 RTL sing 292 n n C7 C8 RTL doub 293 e n C7 H7 RTL sing 294 n n C8 C9 RTL sing 295 n n C8 H8 RTL sing 296 n n C9 C10 RTL doub 297 e n C9 C19 RTL sing 298 n n C10 C11 RTL sing 299 n n C10 H10 RTL sing 300 n n C11 C12 RTL doub 301 e n C11 H11 RTL sing 302 n n C12 C13 RTL sing 303 n n C12 H12 RTL sing 304 n n C13 C14 RTL doub 305 e n C13 C20 RTL sing 306 n n C14 C15 RTL sing 307 n n C14 H14 RTL sing 308 n n C15 O1 RTL sing 309 n n C15 H151 RTL sing 310 n n C15 H152 RTL sing 311 n n O1 HO1 RTL sing 312 n n C16 H161 RTL sing 313 n n C16 H162 RTL sing 314 n n C16 H163 RTL sing 315 n n C17 H171 RTL sing 316 n n C17 H172 RTL sing 317 n n C17 H173 RTL sing 318 n n C18 H181 RTL sing 319 n n C18 H182 RTL sing 320 n n C18 H183 RTL sing 321 n n C19 H191 RTL sing 322 n n C19 H192 RTL sing 323 n n C19 H193 RTL sing 324 n n C20 H201 RTL sing 325 n n C20 H202 RTL sing 326 n n C20 H203 RTL sing 327 n n # _atom_sites.entry_id 1FBM _atom_sites.fract_transf_matrix[1][1] 0.025994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006404 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 RTL B 1 951 951 RTL RTL . G 3 HOH A 1 73 15 HOH HOH . G 3 HOH A 2 74 27 HOH HOH . G 3 HOH A 3 75 113 HOH HOH . G 3 HOH A 4 76 126 HOH HOH . G 3 HOH A 5 77 127 HOH HOH . G 3 HOH A 6 78 138 HOH HOH . G 3 HOH A 7 79 140 HOH HOH . G 3 HOH A 8 80 141 HOH HOH . G 3 HOH A 9 81 143 HOH HOH . H 3 HOH B 1 952 8 HOH HOH . H 3 HOH B 2 953 9 HOH HOH . H 3 HOH B 3 954 12 HOH HOH . H 3 HOH B 4 955 17 HOH HOH . H 3 HOH B 5 956 22 HOH HOH . H 3 HOH B 6 957 29 HOH HOH . H 3 HOH B 7 958 33 HOH HOH . H 3 HOH B 8 959 40 HOH HOH . H 3 HOH B 9 960 42 HOH HOH . H 3 HOH B 10 961 44 HOH HOH . H 3 HOH B 11 962 52 HOH HOH . H 3 HOH B 12 963 55 HOH HOH . H 3 HOH B 13 964 60 HOH HOH . H 3 HOH B 14 965 62 HOH HOH . H 3 HOH B 15 966 77 HOH HOH . H 3 HOH B 16 967 103 HOH HOH . H 3 HOH B 17 968 124 HOH HOH . H 3 HOH B 18 969 128 HOH HOH . H 3 HOH B 19 970 133 HOH HOH . H 3 HOH B 20 971 139 HOH HOH . H 3 HOH B 21 972 142 HOH HOH . H 3 HOH B 22 973 144 HOH HOH . H 3 HOH B 23 974 145 HOH HOH . H 3 HOH B 24 975 146 HOH HOH . H 3 HOH B 25 976 147 HOH HOH . I 3 HOH C 1 73 5 HOH HOH . I 3 HOH C 2 74 13 HOH HOH . I 3 HOH C 3 75 14 HOH HOH . I 3 HOH C 4 76 18 HOH HOH . I 3 HOH C 5 77 19 HOH HOH . I 3 HOH C 6 78 20 HOH HOH . I 3 HOH C 7 79 25 HOH HOH . I 3 HOH C 8 80 30 HOH HOH . I 3 HOH C 9 81 38 HOH HOH . I 3 HOH C 10 82 41 HOH HOH . I 3 HOH C 11 83 46 HOH HOH . I 3 HOH C 12 84 48 HOH HOH . I 3 HOH C 13 85 50 HOH HOH . I 3 HOH C 14 86 51 HOH HOH . I 3 HOH C 15 87 53 HOH HOH . I 3 HOH C 16 88 54 HOH HOH . I 3 HOH C 17 89 56 HOH HOH . I 3 HOH C 18 90 57 HOH HOH . I 3 HOH C 19 91 58 HOH HOH . I 3 HOH C 20 92 69 HOH HOH . I 3 HOH C 21 93 71 HOH HOH . I 3 HOH C 22 94 79 HOH HOH . I 3 HOH C 23 95 82 HOH HOH . I 3 HOH C 24 96 90 HOH HOH . I 3 HOH C 25 97 91 HOH HOH . I 3 HOH C 26 98 112 HOH HOH . I 3 HOH C 27 99 119 HOH HOH . I 3 HOH C 28 100 120 HOH HOH . I 3 HOH C 29 101 130 HOH HOH . I 3 HOH C 30 102 132 HOH HOH . I 3 HOH C 31 103 137 HOH HOH . I 3 HOH C 32 104 150 HOH HOH . I 3 HOH C 33 105 151 HOH HOH . I 3 HOH C 34 106 152 HOH HOH . J 3 HOH D 1 73 3 HOH HOH . J 3 HOH D 2 74 4 HOH HOH . J 3 HOH D 3 75 10 HOH HOH . J 3 HOH D 4 76 11 HOH HOH . J 3 HOH D 5 77 16 HOH HOH . J 3 HOH D 6 78 24 HOH HOH . J 3 HOH D 7 79 35 HOH HOH . J 3 HOH D 8 80 59 HOH HOH . J 3 HOH D 9 81 61 HOH HOH . J 3 HOH D 10 82 63 HOH HOH . J 3 HOH D 11 83 64 HOH HOH . J 3 HOH D 12 84 65 HOH HOH . J 3 HOH D 13 85 67 HOH HOH . J 3 HOH D 14 86 68 HOH HOH . J 3 HOH D 15 87 72 HOH HOH . J 3 HOH D 16 88 73 HOH HOH . J 3 HOH D 17 89 75 HOH HOH . J 3 HOH D 18 90 76 HOH HOH . J 3 HOH D 19 91 78 HOH HOH . J 3 HOH D 20 92 80 HOH HOH . J 3 HOH D 21 93 81 HOH HOH . J 3 HOH D 22 94 83 HOH HOH . J 3 HOH D 23 95 84 HOH HOH . J 3 HOH D 24 96 85 HOH HOH . J 3 HOH D 25 97 86 HOH HOH . J 3 HOH D 26 98 87 HOH HOH . J 3 HOH D 27 99 88 HOH HOH . J 3 HOH D 28 100 89 HOH HOH . J 3 HOH D 29 101 92 HOH HOH . J 3 HOH D 30 102 94 HOH HOH . J 3 HOH D 31 103 95 HOH HOH . J 3 HOH D 32 104 97 HOH HOH . J 3 HOH D 33 105 98 HOH HOH . J 3 HOH D 34 106 99 HOH HOH . J 3 HOH D 35 107 100 HOH HOH . J 3 HOH D 36 108 101 HOH HOH . J 3 HOH D 37 109 102 HOH HOH . J 3 HOH D 38 110 104 HOH HOH . J 3 HOH D 39 111 108 HOH HOH . J 3 HOH D 40 112 109 HOH HOH . J 3 HOH D 41 113 110 HOH HOH . J 3 HOH D 42 114 116 HOH HOH . J 3 HOH D 43 115 118 HOH HOH . J 3 HOH D 44 116 135 HOH HOH . J 3 HOH D 45 117 148 HOH HOH . J 3 HOH D 46 118 149 HOH HOH . J 3 HOH D 47 119 153 HOH HOH . J 3 HOH D 48 120 154 HOH HOH . J 3 HOH D 49 121 155 HOH HOH . J 3 HOH D 50 122 156 HOH HOH . J 3 HOH D 51 123 157 HOH HOH . J 3 HOH D 52 124 158 HOH HOH . K 3 HOH E 1 73 1 HOH HOH . K 3 HOH E 2 74 2 HOH HOH . K 3 HOH E 3 75 6 HOH HOH . K 3 HOH E 4 76 7 HOH HOH . K 3 HOH E 5 77 21 HOH HOH . K 3 HOH E 6 78 23 HOH HOH . K 3 HOH E 7 79 26 HOH HOH . K 3 HOH E 8 80 28 HOH HOH . K 3 HOH E 9 81 31 HOH HOH . K 3 HOH E 10 82 32 HOH HOH . K 3 HOH E 11 83 34 HOH HOH . K 3 HOH E 12 84 36 HOH HOH . K 3 HOH E 13 85 37 HOH HOH . K 3 HOH E 14 86 39 HOH HOH . K 3 HOH E 15 87 45 HOH HOH . K 3 HOH E 16 88 49 HOH HOH . K 3 HOH E 17 89 66 HOH HOH . K 3 HOH E 18 90 70 HOH HOH . K 3 HOH E 19 91 74 HOH HOH . K 3 HOH E 20 92 93 HOH HOH . K 3 HOH E 21 93 96 HOH HOH . K 3 HOH E 22 94 105 HOH HOH . K 3 HOH E 23 95 111 HOH HOH . K 3 HOH E 24 96 114 HOH HOH . K 3 HOH E 25 97 115 HOH HOH . K 3 HOH E 26 98 117 HOH HOH . K 3 HOH E 27 99 123 HOH HOH . K 3 HOH E 28 100 129 HOH HOH . K 3 HOH E 29 101 136 HOH HOH . K 3 HOH E 30 102 159 HOH HOH . K 3 HOH E 31 103 160 HOH HOH . K 3 HOH E 32 104 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . F 2 29.239 47.8 -1.922 1 31.36 ? C1 RTL 951 B 1 HETATM 2 C C2 RTL . . . F 2 28.903 48.395 -0.519 1 25.21 ? C2 RTL 951 B 1 HETATM 3 C C3 RTL . . . F 2 29.837 48.01 0.618 1 30.89 ? C3 RTL 951 B 1 HETATM 4 C C4 RTL . . . F 2 30.954 47.101 0.137 1 30.95 ? C4 RTL 951 B 1 HETATM 5 C C5 RTL . . . F 2 31.496 47.484 -1.256 1 27.39 ? C5 RTL 951 B 1 HETATM 6 C C6 RTL . . . F 2 30.754 47.899 -2.34 1 25.35 ? C6 RTL 951 B 1 HETATM 7 C C7 RTL . . . F 2 31.254 47.295 -3.604 1 28.18 ? C7 RTL 951 B 1 HETATM 8 C C8 RTL . . . F 2 32.364 47.812 -4.277 1 30.04 ? C8 RTL 951 B 1 HETATM 9 C C9 RTL . . . F 2 32.773 47.116 -5.507 1 24.38 ? C9 RTL 951 B 1 HETATM 10 C C10 RTL . . . F 2 33.852 47.787 -6.012 1 30.04 ? C10 RTL 951 B 1 HETATM 11 C C11 RTL . . . F 2 34.286 47.107 -7.236 1 30.76 ? C11 RTL 951 B 1 HETATM 12 C C12 RTL . . . F 2 35.374 47.725 -7.806 1 28.54 ? C12 RTL 951 B 1 HETATM 13 C C13 RTL . . . F 2 35.841 46.984 -8.989 1 29.27 ? C13 RTL 951 B 1 HETATM 14 C C14 RTL . . . F 2 36.927 47.623 -9.543 1 29.11 ? C14 RTL 951 B 1 HETATM 15 C C15 RTL . . . F 2 37.372 46.884 -10.732 1 30.35 ? C15 RTL 951 B 1 HETATM 16 O O1 RTL . . . F 2 38.446 47.498 -11.299 1 29.67 ? O1 RTL 951 B 1 HETATM 17 C C16 RTL . . . F 2 28.569 48.834 -2.768 1 28.19 ? C16 RTL 951 B 1 HETATM 18 C C17 RTL . . . F 2 28.508 46.47 -2.06 1 32.37 ? C17 RTL 951 B 1 HETATM 19 C C18 RTL . . . F 2 33.01 47.397 -1.234 1 22.69 ? C18 RTL 951 B 1 HETATM 20 C C19 RTL . . . F 2 31.887 45.898 -5.796 1 29.77 ? C19 RTL 951 B 1 HETATM 21 C C20 RTL . . . F 2 36.276 45.552 -8.632 1 31.01 ? C20 RTL 951 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #