data_1FBP # _model_server_result.job_id a5YcIfHBMGoGzpD1A1l6Rw _model_server_result.datetime_utc '2024-11-26 02:49:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":336}' # _entry.id 1FBP # _exptl.entry_id 1FBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FBP _cell.length_a 61.6 _cell.length_b 166.6 _cell.length_c 80 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.6 166.6 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 274 A LYS 274 1_555 C C6 F6P . A F6P 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale2 B OG1 THR 27 B THR 27 1_555 H O3P AMP . B AMP 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc1 A OE1 GLU 97 A GLU 97 1_555 D MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 D MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc4 B OE1 GLU 97 B GLU 97 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc5 B OD2 ASP 118 B ASP 118 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc6 B OD1 ASP 121 B ASP 121 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc7 B OE1 GLU 280 B GLU 280 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1FBP _atom_sites.fract_transf_matrix[1][1] 0.016234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F6P A 1 336 336 F6P F6P . D 3 MG A 1 338 338 MG MG . E 4 AMP A 1 337 337 AMP AMP . F 2 F6P B 1 336 336 F6P F6P . G 3 MG B 1 338 338 MG MG . H 4 AMP B 1 337 337 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . F 2 22.092 110.879 27.925 1 20 ? O1 F6P 336 B 1 HETATM 2 C C1 F6P . . . F 2 22.357 110.424 26.627 1 20 ? C1 F6P 336 B 1 HETATM 3 C C2 F6P . . . F 2 23.576 111.158 26.018 1 20 ? C2 F6P 336 B 1 HETATM 4 O O2 F6P . . . F 2 23.819 110.656 24.732 1 20 ? O2 F6P 336 B 1 HETATM 5 C C3 F6P . . . F 2 24.877 111.03 26.852 1 20 ? C3 F6P 336 B 1 HETATM 6 O O3 F6P . . . F 2 25.538 109.792 26.653 1 20 ? O3 F6P 336 B 1 HETATM 7 C C4 F6P . . . F 2 25.67 112.219 26.409 1 20 ? C4 F6P 336 B 1 HETATM 8 O O4 F6P . . . F 2 26.64 112.66 27.349 1 20 ? O4 F6P 336 B 1 HETATM 9 C C5 F6P . . . F 2 24.566 113.295 26.094 1 20 ? C5 F6P 336 B 1 HETATM 10 O O5 F6P . . . F 2 23.345 112.539 25.98 1 20 ? O5 F6P 336 B 1 HETATM 11 C C6 F6P . . . F 2 24.878 114.03 24.885 1 20 ? C6 F6P 336 B 1 HETATM 12 O O6 F6P . . . F 2 23.806 115.02 24.678 1 20 ? O6 F6P 336 B 1 HETATM 13 P P F6P . . . F 2 23.91 115.973 23.386 1 20 ? P F6P 336 B 1 HETATM 14 O O1P F6P . . . F 2 23.905 115.086 22.155 1 20 ? O1P F6P 336 B 1 HETATM 15 O O2P F6P . . . F 2 22.668 116.816 23.517 1 20 ? O2P F6P 336 B 1 HETATM 16 O O3P F6P . . . F 2 25.208 116.766 23.506 1 20 ? O3P F6P 336 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #