data_1FBP # _model_server_result.job_id h9iUWjjtLc_0ZEcuVRvz8g _model_server_result.datetime_utc '2024-10-20 19:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":337}' # _entry.id 1FBP # _exptl.entry_id 1FBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FBP _cell.length_a 61.6 _cell.length_b 166.6 _cell.length_c 80 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.6 166.6 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 274 A LYS 274 1_555 C C6 F6P . A F6P 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale2 B OG1 THR 27 B THR 27 1_555 H O3P AMP . B AMP 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc1 A OE1 GLU 97 A GLU 97 1_555 D MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 D MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc3 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc4 B OE1 GLU 97 B GLU 97 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc5 B OD2 ASP 118 B ASP 118 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc6 B OD1 ASP 121 B ASP 121 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc7 B OE1 GLU 280 B GLU 280 1_555 G MG MG . B MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FBP _atom_sites.fract_transf_matrix[1][1] 0.016234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F6P A 1 336 336 F6P F6P . D 3 MG A 1 338 338 MG MG . E 4 AMP A 1 337 337 AMP AMP . F 2 F6P B 1 336 336 F6P F6P . G 3 MG B 1 338 338 MG MG . H 4 AMP B 1 337 337 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . H 4 26.683 91.176 52.491 1 20 ? P AMP 337 B 1 HETATM 2 O O1P AMP . . . H 4 26.978 90.348 51.231 1 20 ? O1P AMP 337 B 1 HETATM 3 O O2P AMP . . . H 4 25.64 92.218 52.129 1 20 ? O2P AMP 337 B 1 HETATM 4 O O3P AMP . . . H 4 26.3 90.031 53.51 1 20 ? O3P AMP 337 B 1 HETATM 5 O O5' AMP . . . H 4 27.921 91.902 52.77 1 20 ? O5' AMP 337 B 1 HETATM 6 C C5' AMP . . . H 4 28.282 93.298 52.1 1 20 ? C5' AMP 337 B 1 HETATM 7 C C4' AMP . . . H 4 29.467 93.973 52.873 1 20 ? C4' AMP 337 B 1 HETATM 8 O O4' AMP . . . H 4 30.715 93.542 52.072 1 20 ? O4' AMP 337 B 1 HETATM 9 C C3' AMP . . . H 4 29.551 95.335 52.684 1 20 ? C3' AMP 337 B 1 HETATM 10 O O3' AMP . . . H 4 30.182 95.889 53.971 1 20 ? O3' AMP 337 B 1 HETATM 11 C C2' AMP . . . H 4 30.352 95.838 51.416 1 20 ? C2' AMP 337 B 1 HETATM 12 O O2' AMP . . . H 4 31.159 96.96 51.78 1 20 ? O2' AMP 337 B 1 HETATM 13 C C1' AMP . . . H 4 31.449 94.72 51.65 1 20 ? C1' AMP 337 B 1 HETATM 14 N N9 AMP . . . H 4 31.921 94.264 50.289 1 20 ? N9 AMP 337 B 1 HETATM 15 C C8 AMP . . . H 4 32.972 94.819 49.554 1 20 ? C8 AMP 337 B 1 HETATM 16 N N7 AMP . . . H 4 33.316 94.052 48.526 1 20 ? N7 AMP 337 B 1 HETATM 17 C C5 AMP . . . H 4 32.439 93.006 48.57 1 20 ? C5 AMP 337 B 1 HETATM 18 C C6 AMP . . . H 4 32.322 91.809 47.765 1 20 ? C6 AMP 337 B 1 HETATM 19 N N6 AMP . . . H 4 33.082 91.552 46.728 1 20 ? N6 AMP 337 B 1 HETATM 20 N N1 AMP . . . H 4 31.389 90.918 48.202 1 20 ? N1 AMP 337 B 1 HETATM 21 C C2 AMP . . . H 4 30.555 91.174 49.254 1 20 ? C2 AMP 337 B 1 HETATM 22 N N3 AMP . . . H 4 30.604 92.23 50.031 1 20 ? N3 AMP 337 B 1 HETATM 23 C C4 AMP . . . H 4 31.576 93.082 49.673 1 20 ? C4 AMP 337 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #