data_1FCB # _model_server_result.job_id s3iEpzw6FoINCkVgy7Wxgw _model_server_result.datetime_utc '2025-02-26 05:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":580}' # _entry.id 1FCB # _exptl.entry_id 1FCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FCB _cell.length_a 165.51 _cell.length_b 165.51 _cell.length_c 113.71 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 43 A HIS 43 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 413 n n C OXT PYR sing 414 n n C CA PYR sing 415 n n OXT HXT PYR sing 416 n n CA O3 PYR doub 417 n n CA CB PYR sing 418 n n CB HB1 PYR sing 419 n n CB HB2 PYR sing 420 n n CB HB3 PYR sing 421 n n # _atom_sites.entry_id 1FCB _atom_sites.fract_transf_matrix[1][1] 0.006042 _atom_sites.fract_transf_matrix[1][2] 0.003488 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 560 560 HEM HEM . D 3 FMN A 1 570 570 FMN FMN . E 3 FMN B 1 570 570 FMN FMN . F 4 PYR B 1 580 580 PYR PYR . G 5 HOH A 1 571 601 HOH HOH . G 5 HOH A 2 572 602 HOH HOH . G 5 HOH A 3 573 603 HOH HOH . G 5 HOH A 4 574 604 HOH HOH . G 5 HOH A 5 575 605 HOH HOH . G 5 HOH A 6 576 606 HOH HOH . G 5 HOH A 7 577 607 HOH HOH . G 5 HOH A 8 578 608 HOH HOH . G 5 HOH A 9 579 609 HOH HOH . G 5 HOH A 10 580 610 HOH HOH . G 5 HOH A 11 581 611 HOH HOH . G 5 HOH A 12 582 612 HOH HOH . G 5 HOH A 13 583 613 HOH HOH . G 5 HOH A 14 584 614 HOH HOH . G 5 HOH A 15 585 615 HOH HOH . G 5 HOH A 16 586 616 HOH HOH . G 5 HOH A 17 587 617 HOH HOH . G 5 HOH A 18 588 618 HOH HOH . G 5 HOH A 19 589 619 HOH HOH . G 5 HOH A 20 590 620 HOH HOH . G 5 HOH A 21 591 621 HOH HOH . G 5 HOH A 22 592 622 HOH HOH . G 5 HOH A 23 593 623 HOH HOH . G 5 HOH A 24 594 624 HOH HOH . G 5 HOH A 25 595 625 HOH HOH . G 5 HOH A 26 596 626 HOH HOH . G 5 HOH A 27 597 627 HOH HOH . G 5 HOH A 28 598 628 HOH HOH . G 5 HOH A 29 599 629 HOH HOH . G 5 HOH A 30 600 630 HOH HOH . G 5 HOH A 31 601 632 HOH HOH . G 5 HOH A 32 602 633 HOH HOH . G 5 HOH A 33 603 634 HOH HOH . G 5 HOH A 34 604 635 HOH HOH . G 5 HOH A 35 605 636 HOH HOH . G 5 HOH A 36 606 637 HOH HOH . G 5 HOH A 37 607 638 HOH HOH . G 5 HOH A 38 608 639 HOH HOH . G 5 HOH A 39 609 640 HOH HOH . G 5 HOH A 40 610 641 HOH HOH . G 5 HOH A 41 611 642 HOH HOH . G 5 HOH A 42 612 643 HOH HOH . G 5 HOH A 43 613 644 HOH HOH . G 5 HOH A 44 614 645 HOH HOH . G 5 HOH A 45 615 646 HOH HOH . G 5 HOH A 46 616 647 HOH HOH . G 5 HOH A 47 617 648 HOH HOH . G 5 HOH A 48 618 649 HOH HOH . G 5 HOH A 49 619 650 HOH HOH . G 5 HOH A 50 620 651 HOH HOH . G 5 HOH A 51 621 652 HOH HOH . G 5 HOH A 52 622 653 HOH HOH . G 5 HOH A 53 623 654 HOH HOH . G 5 HOH A 54 624 655 HOH HOH . G 5 HOH A 55 625 656 HOH HOH . G 5 HOH A 56 626 657 HOH HOH . G 5 HOH A 57 627 658 HOH HOH . G 5 HOH A 58 628 659 HOH HOH . G 5 HOH A 59 629 660 HOH HOH . G 5 HOH A 60 630 661 HOH HOH . G 5 HOH A 61 631 662 HOH HOH . G 5 HOH A 62 632 663 HOH HOH . G 5 HOH A 63 633 664 HOH HOH . G 5 HOH A 64 634 665 HOH HOH . G 5 HOH A 65 635 666 HOH HOH . G 5 HOH A 66 636 667 HOH HOH . G 5 HOH A 67 637 668 HOH HOH . G 5 HOH A 68 638 669 HOH HOH . G 5 HOH A 69 639 670 HOH HOH . G 5 HOH A 70 640 671 HOH HOH . G 5 HOH A 71 641 672 HOH HOH . G 5 HOH A 72 642 673 HOH HOH . G 5 HOH A 73 643 674 HOH HOH . G 5 HOH A 74 644 675 HOH HOH . G 5 HOH A 75 645 676 HOH HOH . G 5 HOH A 76 646 677 HOH HOH . G 5 HOH A 77 647 678 HOH HOH . G 5 HOH A 78 648 679 HOH HOH . G 5 HOH A 79 649 680 HOH HOH . G 5 HOH A 80 650 681 HOH HOH . G 5 HOH A 81 651 682 HOH HOH . G 5 HOH A 82 652 683 HOH HOH . G 5 HOH A 83 653 684 HOH HOH . G 5 HOH A 84 654 685 HOH HOH . G 5 HOH A 85 655 686 HOH HOH . G 5 HOH A 86 656 687 HOH HOH . G 5 HOH A 87 657 688 HOH HOH . G 5 HOH A 88 658 689 HOH HOH . G 5 HOH A 89 659 690 HOH HOH . G 5 HOH A 90 660 691 HOH HOH . G 5 HOH A 91 661 692 HOH HOH . G 5 HOH A 92 662 693 HOH HOH . G 5 HOH A 93 663 694 HOH HOH . G 5 HOH A 94 664 695 HOH HOH . G 5 HOH A 95 665 696 HOH HOH . G 5 HOH A 96 666 697 HOH HOH . G 5 HOH A 97 667 698 HOH HOH . G 5 HOH A 98 668 699 HOH HOH . G 5 HOH A 99 669 700 HOH HOH . G 5 HOH A 100 670 702 HOH HOH . G 5 HOH A 101 671 703 HOH HOH . G 5 HOH A 102 672 705 HOH HOH . G 5 HOH A 103 673 706 HOH HOH . G 5 HOH A 104 674 707 HOH HOH . G 5 HOH A 105 675 708 HOH HOH . G 5 HOH A 106 676 711 HOH HOH . G 5 HOH A 107 677 712 HOH HOH . G 5 HOH A 108 678 713 HOH HOH . G 5 HOH A 109 679 714 HOH HOH . G 5 HOH A 110 680 715 HOH HOH . G 5 HOH A 111 681 717 HOH HOH . G 5 HOH A 112 682 718 HOH HOH . G 5 HOH A 113 683 719 HOH HOH . G 5 HOH A 114 684 720 HOH HOH . G 5 HOH A 115 685 721 HOH HOH . G 5 HOH A 116 686 722 HOH HOH . G 5 HOH A 117 687 723 HOH HOH . G 5 HOH A 118 688 724 HOH HOH . G 5 HOH A 119 689 725 HOH HOH . G 5 HOH A 120 690 726 HOH HOH . G 5 HOH A 121 691 727 HOH HOH . G 5 HOH A 122 692 728 HOH HOH . G 5 HOH A 123 693 729 HOH HOH . G 5 HOH A 124 694 730 HOH HOH . G 5 HOH A 125 695 731 HOH HOH . G 5 HOH A 126 696 732 HOH HOH . G 5 HOH A 127 697 733 HOH HOH . G 5 HOH A 128 698 734 HOH HOH . G 5 HOH A 129 699 735 HOH HOH . G 5 HOH A 130 700 736 HOH HOH . G 5 HOH A 131 701 737 HOH HOH . G 5 HOH A 132 702 738 HOH HOH . G 5 HOH A 133 703 739 HOH HOH . G 5 HOH A 134 704 740 HOH HOH . G 5 HOH A 135 705 741 HOH HOH . G 5 HOH A 136 706 742 HOH HOH . G 5 HOH A 137 707 743 HOH HOH . G 5 HOH A 138 708 744 HOH HOH . G 5 HOH A 139 709 745 HOH HOH . G 5 HOH A 140 710 746 HOH HOH . G 5 HOH A 141 711 747 HOH HOH . G 5 HOH A 142 712 748 HOH HOH . G 5 HOH A 143 713 749 HOH HOH . G 5 HOH A 144 714 750 HOH HOH . G 5 HOH A 145 715 751 HOH HOH . G 5 HOH A 146 716 752 HOH HOH . G 5 HOH A 147 717 753 HOH HOH . G 5 HOH A 148 718 754 HOH HOH . G 5 HOH A 149 719 755 HOH HOH . G 5 HOH A 150 720 756 HOH HOH . G 5 HOH A 151 721 757 HOH HOH . G 5 HOH A 152 722 758 HOH HOH . G 5 HOH A 153 723 759 HOH HOH . G 5 HOH A 154 724 760 HOH HOH . G 5 HOH A 155 725 761 HOH HOH . G 5 HOH A 156 726 762 HOH HOH . G 5 HOH A 157 727 763 HOH HOH . G 5 HOH A 158 728 764 HOH HOH . G 5 HOH A 159 729 765 HOH HOH . G 5 HOH A 160 730 766 HOH HOH . G 5 HOH A 161 731 767 HOH HOH . G 5 HOH A 162 732 768 HOH HOH . G 5 HOH A 163 733 769 HOH HOH . G 5 HOH A 164 734 770 HOH HOH . G 5 HOH A 165 735 771 HOH HOH . G 5 HOH A 166 736 772 HOH HOH . G 5 HOH A 167 737 773 HOH HOH . G 5 HOH A 168 738 774 HOH HOH . G 5 HOH A 169 739 775 HOH HOH . G 5 HOH A 170 740 776 HOH HOH . G 5 HOH A 171 741 777 HOH HOH . G 5 HOH A 172 742 778 HOH HOH . G 5 HOH A 173 743 779 HOH HOH . G 5 HOH A 174 744 780 HOH HOH . G 5 HOH A 175 745 781 HOH HOH . G 5 HOH A 176 746 782 HOH HOH . G 5 HOH A 177 747 783 HOH HOH . G 5 HOH A 178 748 784 HOH HOH . G 5 HOH A 179 749 785 HOH HOH . G 5 HOH A 180 750 786 HOH HOH . G 5 HOH A 181 751 639 HOH HOH . G 5 HOH A 182 752 648 HOH HOH . H 5 HOH B 1 581 704 HOH HOH . H 5 HOH B 2 582 710 HOH HOH . H 5 HOH B 3 583 716 HOH HOH . H 5 HOH B 4 584 601 HOH HOH . H 5 HOH B 5 585 602 HOH HOH . H 5 HOH B 6 586 604 HOH HOH . H 5 HOH B 7 587 605 HOH HOH . H 5 HOH B 8 588 606 HOH HOH . H 5 HOH B 9 589 607 HOH HOH . H 5 HOH B 10 590 608 HOH HOH . H 5 HOH B 11 591 609 HOH HOH . H 5 HOH B 12 592 610 HOH HOH . H 5 HOH B 13 593 611 HOH HOH . H 5 HOH B 14 594 612 HOH HOH . H 5 HOH B 15 595 613 HOH HOH . H 5 HOH B 16 596 614 HOH HOH . H 5 HOH B 17 597 615 HOH HOH . H 5 HOH B 18 598 616 HOH HOH . H 5 HOH B 19 599 617 HOH HOH . H 5 HOH B 20 600 618 HOH HOH . H 5 HOH B 21 601 619 HOH HOH . H 5 HOH B 22 602 620 HOH HOH . H 5 HOH B 23 603 621 HOH HOH . H 5 HOH B 24 604 622 HOH HOH . H 5 HOH B 25 605 623 HOH HOH . H 5 HOH B 26 606 624 HOH HOH . H 5 HOH B 27 607 625 HOH HOH . H 5 HOH B 28 608 626 HOH HOH . H 5 HOH B 29 609 627 HOH HOH . H 5 HOH B 30 610 628 HOH HOH . H 5 HOH B 31 611 629 HOH HOH . H 5 HOH B 32 612 630 HOH HOH . H 5 HOH B 33 613 631 HOH HOH . H 5 HOH B 34 614 632 HOH HOH . H 5 HOH B 35 615 633 HOH HOH . H 5 HOH B 36 616 634 HOH HOH . H 5 HOH B 37 617 635 HOH HOH . H 5 HOH B 38 618 636 HOH HOH . H 5 HOH B 39 619 637 HOH HOH . H 5 HOH B 40 620 638 HOH HOH . H 5 HOH B 41 621 640 HOH HOH . H 5 HOH B 42 622 641 HOH HOH . H 5 HOH B 43 623 642 HOH HOH . H 5 HOH B 44 624 643 HOH HOH . H 5 HOH B 45 625 644 HOH HOH . H 5 HOH B 46 626 645 HOH HOH . H 5 HOH B 47 627 646 HOH HOH . H 5 HOH B 48 628 647 HOH HOH . H 5 HOH B 49 629 649 HOH HOH . H 5 HOH B 50 630 650 HOH HOH . H 5 HOH B 51 631 651 HOH HOH . H 5 HOH B 52 632 652 HOH HOH . H 5 HOH B 53 633 653 HOH HOH . H 5 HOH B 54 634 654 HOH HOH . H 5 HOH B 55 635 655 HOH HOH . H 5 HOH B 56 636 656 HOH HOH . H 5 HOH B 57 637 657 HOH HOH . H 5 HOH B 58 638 658 HOH HOH . H 5 HOH B 59 639 659 HOH HOH . H 5 HOH B 60 640 660 HOH HOH . H 5 HOH B 61 641 661 HOH HOH . H 5 HOH B 62 642 662 HOH HOH . H 5 HOH B 63 643 663 HOH HOH . H 5 HOH B 64 644 664 HOH HOH . H 5 HOH B 65 645 665 HOH HOH . H 5 HOH B 66 646 666 HOH HOH . H 5 HOH B 67 647 667 HOH HOH . H 5 HOH B 68 648 668 HOH HOH . H 5 HOH B 69 649 669 HOH HOH . H 5 HOH B 70 650 670 HOH HOH . H 5 HOH B 71 651 671 HOH HOH . H 5 HOH B 72 652 672 HOH HOH . H 5 HOH B 73 653 673 HOH HOH . H 5 HOH B 74 654 674 HOH HOH . H 5 HOH B 75 655 675 HOH HOH . H 5 HOH B 76 656 676 HOH HOH . H 5 HOH B 77 657 677 HOH HOH . H 5 HOH B 78 658 678 HOH HOH . H 5 HOH B 79 659 679 HOH HOH . H 5 HOH B 80 660 680 HOH HOH . H 5 HOH B 81 661 681 HOH HOH . H 5 HOH B 82 662 682 HOH HOH . H 5 HOH B 83 663 683 HOH HOH . H 5 HOH B 84 664 684 HOH HOH . H 5 HOH B 85 665 685 HOH HOH . H 5 HOH B 86 666 686 HOH HOH . H 5 HOH B 87 667 687 HOH HOH . H 5 HOH B 88 668 688 HOH HOH . H 5 HOH B 89 669 689 HOH HOH . H 5 HOH B 90 670 690 HOH HOH . H 5 HOH B 91 671 691 HOH HOH . H 5 HOH B 92 672 692 HOH HOH . H 5 HOH B 93 673 694 HOH HOH . H 5 HOH B 94 674 695 HOH HOH . H 5 HOH B 95 675 696 HOH HOH . H 5 HOH B 96 676 697 HOH HOH . H 5 HOH B 97 677 698 HOH HOH . H 5 HOH B 98 678 699 HOH HOH . H 5 HOH B 99 679 700 HOH HOH . H 5 HOH B 100 680 701 HOH HOH . H 5 HOH B 101 681 702 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . F 4 45.052 67.139 -30.94 1 44.71 ? C PYR 580 B 1 HETATM 2 O O PYR . . . F 4 44.638 65.934 -30.997 1 44.72 ? O PYR 580 B 1 HETATM 3 O OXT PYR . . . F 4 44.961 67.812 -29.838 1 43.47 ? OXT PYR 580 B 1 HETATM 4 C CA PYR . . . F 4 45.615 67.741 -32.066 1 45.85 ? CA PYR 580 B 1 HETATM 5 O O3 PYR . . . F 4 46.086 69.045 -32.169 1 46.4 ? O3 PYR 580 B 1 HETATM 6 C CB PYR . . . F 4 45.879 67.139 -33.601 1 47.02 ? CB PYR 580 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #