data_1FD2 # _model_server_result.job_id d011dkbb7TlqXeThQKko4g _model_server_result.datetime_utc '2025-04-28 00:29:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":107}' # _entry.id 1FD2 # _exptl.entry_id 1FD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FD2 _cell.length_a 55 _cell.length_b 55 _cell.length_c 95.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 C FE3 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A SG CYS 16 A CYS 16 1_555 C FE1 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A SG CYS 24 A CYS 24 1_555 B FE4 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A SG CYS 39 A CYS 39 1_555 B FE1 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc5 A SG CYS 42 A CYS 42 1_555 B FE2 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 A SG CYS 45 A CYS 45 1_555 B FE3 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc7 A SG CYS 49 A CYS 49 1_555 C FE4 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 299 n n FE1 S3 SF4 sing 300 n n FE1 S4 SF4 sing 301 n n FE2 S1 SF4 sing 302 n n FE2 S3 SF4 sing 303 n n FE2 S4 SF4 sing 304 n n FE3 S1 SF4 sing 305 n n FE3 S2 SF4 sing 306 n n FE3 S4 SF4 sing 307 n n FE4 S1 SF4 sing 308 n n FE4 S2 SF4 sing 309 n n FE4 S3 SF4 sing 310 n n # _atom_sites.entry_id 1FD2 _atom_sites.fract_transf_matrix[1][1] 0.018182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 107 107 SF4 FS4 . C 3 F3S A 1 108 108 F3S FS3 . D 4 HOH A 1 111 111 HOH HOH . D 4 HOH A 2 113 113 HOH HOH . D 4 HOH A 3 116 116 HOH HOH . D 4 HOH A 4 117 117 HOH HOH . D 4 HOH A 5 118 118 HOH HOH . D 4 HOH A 6 119 119 HOH HOH . D 4 HOH A 7 121 121 HOH HOH . D 4 HOH A 8 122 122 HOH HOH . D 4 HOH A 9 123 123 HOH HOH . D 4 HOH A 10 124 124 HOH HOH . D 4 HOH A 11 125 125 HOH HOH . D 4 HOH A 12 126 126 HOH HOH . D 4 HOH A 13 127 127 HOH HOH . D 4 HOH A 14 128 128 HOH HOH . D 4 HOH A 15 130 130 HOH HOH . D 4 HOH A 16 132 132 HOH HOH . D 4 HOH A 17 135 135 HOH HOH . D 4 HOH A 18 136 136 HOH HOH . D 4 HOH A 19 137 137 HOH HOH . D 4 HOH A 20 139 139 HOH HOH . D 4 HOH A 21 140 140 HOH HOH . D 4 HOH A 22 141 141 HOH HOH . D 4 HOH A 23 143 143 HOH HOH . D 4 HOH A 24 144 144 HOH HOH . D 4 HOH A 25 145 145 HOH HOH . D 4 HOH A 26 146 146 HOH HOH . D 4 HOH A 27 148 148 HOH HOH . D 4 HOH A 28 150 150 HOH HOH . D 4 HOH A 29 151 151 HOH HOH . D 4 HOH A 30 152 152 HOH HOH . D 4 HOH A 31 153 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 14.942 20.219 9.982 1 15.45 ? FE1 SF4 107 A 1 HETATM 2 FE FE2 SF4 . . . B 2 14.896 22.68 11.143 1 13.9 ? FE2 SF4 107 A 1 HETATM 3 FE FE3 SF4 . . . B 2 15.75 20.578 12.441 1 16.25 ? FE3 SF4 107 A 1 HETATM 4 FE FE4 SF4 . . . B 2 13.162 20.833 11.812 1 14.12 ? FE4 SF4 107 A 1 HETATM 5 S S1 SF4 . . . B 2 14.287 22.147 13.264 1 12.64 ? S1 SF4 107 A 1 HETATM 6 S S2 SF4 . . . B 2 14.417 18.892 11.755 1 14.94 ? S2 SF4 107 A 1 HETATM 7 S S3 SF4 . . . B 2 13.32 21.82 9.747 1 10.07 ? S3 SF4 107 A 1 HETATM 8 S S4 SF4 . . . B 2 16.783 21.357 10.577 1 9.74 ? S4 SF4 107 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #