data_1FD5
#
_model_server_result.job_id            UKeY5YaEDr1po97dN2xLOA 
_model_server_result.datetime_utc      '2025-06-21 09:45:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":23}' 
#
_entry.id    1FD5 
#
_exptl.entry_id    1FD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1FD5 
_cell.length_a            29.584 
_cell.length_b            54.038 
_cell.length_c            40.215 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        21 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N7 DG 2 A DG 2 1_555 C CO CO . A CO 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc2 C CO CO . A CO 21 1_555 G O HOH . A HOH 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc3 C CO CO . A CO 21 1_555 G O HOH . A HOH 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc4 C CO CO . A CO 21 1_555 G O HOH . A HOH 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc5 C CO CO . A CO 21 1_555 G O HOH . A HOH 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc6 C CO CO . A CO 21 1_555 G O HOH . A HOH 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc7 B OP2 DG 2 B DG 8 1_555 F MG MG . B MG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc8 B OP2 DG 2 B DG 8 4_556 F MG MG . B MG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc9 B N7 DG 6 B DG 12 1_555 E CO CO . B CO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc10 B N7 DG 6 B DG 12 3_755 E CO CO . B CO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc11 E CO CO . B CO 22 1_555 H O HOH . B HOH 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc12 E CO CO . B CO 22 1_555 H O HOH . B HOH 170 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc13 E CO CO . B CO 22 1_555 H O HOH . B HOH 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc14 E CO CO . B CO 22 1_555 H O HOH . B HOH 171 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc15 F MG MG . B MG 23 1_555 H O HOH . B HOH 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc16 F MG MG . B MG 23 1_555 H O HOH . B HOH 172 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc17 F MG MG . B MG 23 1_555 H O HOH . B HOH 172 3_656 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
metalc ? metalc18 F MG MG . B MG 23 1_555 H O HOH . B HOH 172 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
metalc ? metalc19 F MG MG . B MG 23 1_555 H O HOH . B HOH 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc20 F MG MG . B MG 23 1_555 H O HOH . B HOH 173 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1FD5 
_atom_sites.fract_transf_matrix[1][1]    0.033802 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO A 1 21 21 CO CO5 . 
D 3 B9A A 1 13 13 B9A TMR . 
E 2 CO B 1 22 22 CO COS . 
F 4 MG B 1 23 23 MG MG2 . 
G 5 HOH A 1 103 103 HOH HOH . 
G 5 HOH A 2 105 105 HOH HOH . 
G 5 HOH A 3 106 106 HOH HOH . 
G 5 HOH A 4 108 108 HOH HOH . 
G 5 HOH A 5 109 109 HOH HOH . 
G 5 HOH A 6 110 110 HOH HOH . 
G 5 HOH A 7 118 118 HOH HOH . 
G 5 HOH A 8 119 119 HOH HOH . 
G 5 HOH A 9 122 122 HOH HOH . 
G 5 HOH A 10 124 124 HOH HOH . 
G 5 HOH A 11 126 126 HOH HOH . 
G 5 HOH A 12 127 127 HOH HOH . 
G 5 HOH A 13 128 128 HOH HOH . 
G 5 HOH A 14 130 130 HOH HOH . 
G 5 HOH A 15 132 132 HOH HOH . 
G 5 HOH A 16 134 134 HOH HOH . 
G 5 HOH A 17 135 135 HOH HOH . 
G 5 HOH A 18 136 136 HOH HOH . 
G 5 HOH A 19 138 138 HOH HOH . 
G 5 HOH A 20 141 141 HOH HOH . 
G 5 HOH A 21 143 143 HOH HOH . 
G 5 HOH A 22 144 144 HOH HOH . 
G 5 HOH A 23 145 145 HOH HOH . 
G 5 HOH A 24 146 146 HOH HOH . 
G 5 HOH A 25 152 152 HOH HOH . 
G 5 HOH A 26 153 153 HOH HOH . 
G 5 HOH A 27 155 155 HOH HOH . 
G 5 HOH A 28 157 157 HOH HOH . 
G 5 HOH A 29 160 160 HOH HOH . 
G 5 HOH A 30 161 161 HOH HOH . 
G 5 HOH A 31 162 162 HOH HOH . 
G 5 HOH A 32 165 165 HOH HOH . 
G 5 HOH A 33 169 169 HOH HOH . 
G 5 HOH A 34 174 21 HOH CO5 . 
G 5 HOH A 35 175 21 HOH CO5 . 
G 5 HOH A 36 176 21 HOH CO5 . 
G 5 HOH A 37 177 21 HOH CO5 . 
G 5 HOH A 38 178 21 HOH CO5 . 
H 5 HOH B 1 101 101 HOH HOH . 
H 5 HOH B 2 102 102 HOH HOH . 
H 5 HOH B 3 104 104 HOH HOH . 
H 5 HOH B 4 107 107 HOH HOH . 
H 5 HOH B 5 111 111 HOH HOH . 
H 5 HOH B 6 112 112 HOH HOH . 
H 5 HOH B 7 113 113 HOH HOH . 
H 5 HOH B 8 114 114 HOH HOH . 
H 5 HOH B 9 115 115 HOH HOH . 
H 5 HOH B 10 116 116 HOH HOH . 
H 5 HOH B 11 117 117 HOH HOH . 
H 5 HOH B 12 120 120 HOH HOH . 
H 5 HOH B 13 123 123 HOH HOH . 
H 5 HOH B 14 125 125 HOH HOH . 
H 5 HOH B 15 129 129 HOH HOH . 
H 5 HOH B 16 131 131 HOH HOH . 
H 5 HOH B 17 133 133 HOH HOH . 
H 5 HOH B 18 137 137 HOH HOH . 
H 5 HOH B 19 139 139 HOH HOH . 
H 5 HOH B 20 140 140 HOH HOH . 
H 5 HOH B 21 142 142 HOH HOH . 
H 5 HOH B 22 147 147 HOH HOH . 
H 5 HOH B 23 148 148 HOH HOH . 
H 5 HOH B 24 149 149 HOH HOH . 
H 5 HOH B 25 150 150 HOH HOH . 
H 5 HOH B 26 151 151 HOH HOH . 
H 5 HOH B 27 154 154 HOH HOH . 
H 5 HOH B 28 156 156 HOH HOH . 
H 5 HOH B 29 158 158 HOH HOH . 
H 5 HOH B 30 163 163 HOH HOH . 
H 5 HOH B 31 164 164 HOH HOH . 
H 5 HOH B 32 166 166 HOH HOH . 
H 5 HOH B 33 170 22 HOH COS . 
H 5 HOH B 34 171 22 HOH COS . 
H 5 HOH B 35 172 23 HOH MG2 . 
H 5 HOH B 36 173 23 HOH MG2 . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               16.148 
_atom_site.Cartn_y               0 
_atom_site.Cartn_z               20.108 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        35.83 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           23 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#