data_1FDB # _model_server_result.job_id tT0zHHkhR2cbqrDa5vpNyQ _model_server_result.datetime_utc '2025-04-26 09:44:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":108}' # _entry.id 1FDB # _exptl.entry_id 1FDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FDB _cell.length_a 55.5 _cell.length_b 55.5 _cell.length_c 95.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 C FE3 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A SG CYS 16 A CYS 16 1_555 C FE1 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 A SG CYS 20 A CYS 20 1_555 B FE4 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 A SG CYS 39 A CYS 39 1_555 B FE1 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 A SG CYS 42 A CYS 42 1_555 B FE2 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 A SG CYS 45 A CYS 45 1_555 B FE3 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc7 A SG CYS 49 A CYS 49 1_555 C FE4 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 83 n n FE1 S2 F3S sing 84 n n FE1 S3 F3S sing 85 n n FE3 S1 F3S sing 86 n n FE3 S3 F3S sing 87 n n FE3 S4 F3S sing 88 n n FE4 S2 F3S sing 89 n n FE4 S3 F3S sing 90 n n FE4 S4 F3S sing 91 n n # _atom_sites.entry_id 1FDB _atom_sites.fract_transf_matrix[1][1] 0.018018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 107 107 SF4 FS4 . C 3 F3S A 1 108 108 F3S FS3 . D 4 HOH A 1 109 109 HOH HOH . D 4 HOH A 2 110 110 HOH HOH . D 4 HOH A 3 111 111 HOH HOH . D 4 HOH A 4 112 112 HOH HOH . D 4 HOH A 5 113 113 HOH HOH . D 4 HOH A 6 114 114 HOH HOH . D 4 HOH A 7 115 115 HOH HOH . D 4 HOH A 8 116 116 HOH HOH . D 4 HOH A 9 117 117 HOH HOH . D 4 HOH A 10 118 118 HOH HOH . D 4 HOH A 11 119 119 HOH HOH . D 4 HOH A 12 120 120 HOH HOH . D 4 HOH A 13 121 121 HOH HOH . D 4 HOH A 14 122 122 HOH HOH . D 4 HOH A 15 123 123 HOH HOH . D 4 HOH A 16 124 124 HOH HOH . D 4 HOH A 17 125 125 HOH HOH . D 4 HOH A 18 126 126 HOH HOH . D 4 HOH A 19 128 128 HOH HOH . D 4 HOH A 20 129 129 HOH HOH . D 4 HOH A 21 130 130 HOH HOH . D 4 HOH A 22 131 131 HOH HOH . D 4 HOH A 23 133 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . C 3 15.446 16.204 20.544 1 18.08 ? FE1 F3S 108 A 1 HETATM 2 FE FE3 F3S . . . C 3 16.226 13.734 21.106 1 15.97 ? FE3 F3S 108 A 1 HETATM 3 FE FE4 F3S . . . C 3 17.831 15.762 21.394 1 16.26 ? FE4 F3S 108 A 1 HETATM 4 S S1 F3S . . . C 3 14.168 14.615 21.611 1 15.29 ? S1 F3S 108 A 1 HETATM 5 S S2 F3S . . . C 3 16.475 17.454 22.105 1 14.98 ? S2 F3S 108 A 1 HETATM 6 S S3 F3S . . . C 3 17.014 15.007 19.389 1 16.22 ? S3 F3S 108 A 1 HETATM 7 S S4 F3S . . . C 3 17.702 13.986 22.819 1 16.17 ? S4 F3S 108 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 499 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #