data_1FDG # _model_server_result.job_id OC02uH1TYH8L1CANXTUd1A _model_server_result.datetime_utc '2025-02-16 23:55:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":13}' # _entry.id 1FDG # _exptl.entry_id 1FDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.212 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FDG _cell.length_a 29.094 _cell.length_b 52.714 _cell.length_c 40.183 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 2 A DG 2 1_555 C CO CO . A CO 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 C CO CO . A CO 21 1_555 G O HOH . A HOH 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 C CO CO . A CO 21 1_555 G O HOH . A HOH 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 C CO CO . A CO 21 1_555 G O HOH . A HOH 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc5 C CO CO . A CO 21 1_555 G O HOH . A HOH 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 C CO CO . A CO 21 1_555 G O HOH . A HOH 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 B N7 DG 6 B DG 12 1_555 F CO CO . B CO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 F CO CO . B CO 22 1_555 H O HOH . B HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H8 O2' _chem_comp.formula_weight 208.212 _chem_comp.id 9TA _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C1 9TA doub 1 n y C1 C2 9TA sing 2 n y C1 H1 9TA sing 3 n n C3 C2 9TA doub 4 n y C2 H2 9TA sing 5 n n C4 C3 9TA sing 6 n y C3 H3 9TA sing 7 n n C12 C4 9TA doub 8 n y C4 H4 9TA sing 9 n n C6 C5 9TA doub 10 n y C5 C14 9TA sing 11 n y C5 H5 9TA sing 12 n n C6 C7 9TA sing 13 n y C6 H6 9TA sing 14 n n C7 C8 9TA doub 15 n y C7 H7 9TA sing 16 n n C8 C13 9TA sing 17 n y C8 H8 9TA sing 18 n n C13 C9 9TA sing 19 n n C9 O9 9TA doub 20 n n C9 C11 9TA sing 21 n n C14 C10 9TA sing 22 n n O10 C10 9TA doub 23 n n C10 C12 9TA sing 24 n n C12 C11 9TA sing 25 n y C14 C13 9TA doub 26 n y # _atom_sites.entry_id 1FDG _atom_sites.fract_transf_matrix[1][1] 0.034371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 21 21 CO CO5 . D 3 9TA B 1 13 13 9TA TMR . E 4 MG B 1 23 23 MG MG2 . F 2 CO B 1 22 22 CO NCO . G 5 HOH A 1 101 101 HOH HOH . G 5 HOH A 2 104 104 HOH HOH . G 5 HOH A 3 105 105 HOH HOH . G 5 HOH A 4 107 107 HOH HOH . G 5 HOH A 5 108 108 HOH HOH . G 5 HOH A 6 109 109 HOH HOH . G 5 HOH A 7 113 113 HOH HOH . G 5 HOH A 8 114 114 HOH HOH . G 5 HOH A 9 119 119 HOH HOH . G 5 HOH A 10 120 120 HOH HOH . G 5 HOH A 11 123 21 HOH CO5 . G 5 HOH A 12 124 21 HOH CO5 . G 5 HOH A 13 125 21 HOH CO5 . G 5 HOH A 14 126 21 HOH CO5 . G 5 HOH A 15 127 21 HOH CO5 . H 5 HOH B 1 102 102 HOH HOH . H 5 HOH B 2 103 103 HOH HOH . H 5 HOH B 3 106 106 HOH HOH . H 5 HOH B 4 110 110 HOH HOH . H 5 HOH B 5 111 111 HOH HOH . H 5 HOH B 6 112 112 HOH HOH . H 5 HOH B 7 115 115 HOH HOH . H 5 HOH B 8 116 116 HOH HOH . H 5 HOH B 9 117 117 HOH HOH . H 5 HOH B 10 118 118 HOH HOH . H 5 HOH B 11 121 22 HOH NCO . H 5 HOH B 12 122 22 HOH NCO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9TA . . . D 3 13.61 1.04 15.15 0.5 43.44 ? C1 9TA 13 B 1 HETATM 2 C C2 9TA . . . D 3 14.093 0.476 16.328 0.5 43.14 ? C2 9TA 13 B 1 HETATM 3 C C3 9TA . . . D 3 14.999 -0.579 16.273 0.5 43.6 ? C3 9TA 13 B 1 HETATM 4 C C4 9TA . . . D 3 15.428 -1.064 15.041 0.5 43.9 ? C4 9TA 13 B 1 HETATM 5 C C5 9TA . . . D 3 15.29 -0.925 10.084 0.5 41.8 ? C5 9TA 13 B 1 HETATM 6 C C6 9TA . . . D 3 14.821 -0.354 8.906 0.5 34.55 ? C6 9TA 13 B 1 HETATM 7 C C7 9TA . . . D 3 13.903 0.687 8.962 0.5 36.31 ? C7 9TA 13 B 1 HETATM 8 C C8 9TA . . . D 3 13.494 1.194 10.193 0.5 40.53 ? C8 9TA 13 B 1 HETATM 9 C C9 9TA . . . D 3 13.533 1.156 12.674 0.5 39.39 ? C9 9TA 13 B 1 HETATM 10 O O9 9TA . . . D 3 12.709 2.083 12.719 0.5 38.63 ? O9 9TA 13 B 1 HETATM 11 C C10 9TA . . . D 3 15.374 -1.034 12.561 0.5 40.13 ? C10 9TA 13 B 1 HETATM 12 O O10 9TA . . . D 3 16.192 -1.965 12.508 0.5 39.85 ? O10 9TA 13 B 1 HETATM 13 C C11 9TA . . . D 3 14.026 0.545 13.918 0.5 39.81 ? C11 9TA 13 B 1 HETATM 14 C C12 9TA . . . D 3 14.944 -0.503 13.863 0.5 40.21 ? C12 9TA 13 B 1 HETATM 15 C C13 9TA . . . D 3 13.978 0.634 11.373 0.5 40.6 ? C13 9TA 13 B 1 HETATM 16 C C14 9TA . . . D 3 14.868 -0.436 11.318 0.5 41.86 ? C14 9TA 13 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 742 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #