data_1FDG # _model_server_result.job_id DKPL4avJmQixpjQy2xVHtw _model_server_result.datetime_utc '2024-11-26 06:56:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":23}' # _entry.id 1FDG # _exptl.entry_id 1FDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FDG _cell.length_a 29.094 _cell.length_b 52.714 _cell.length_c 40.183 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 2 A DG 2 1_555 C CO CO . A CO 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 C CO CO . A CO 21 1_555 G O HOH . A HOH 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 C CO CO . A CO 21 1_555 G O HOH . A HOH 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 C CO CO . A CO 21 1_555 G O HOH . A HOH 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc5 C CO CO . A CO 21 1_555 G O HOH . A HOH 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 C CO CO . A CO 21 1_555 G O HOH . A HOH 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 B N7 DG 6 B DG 12 1_555 F CO CO . B CO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 F CO CO . B CO 22 1_555 H O HOH . B HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1FDG _atom_sites.fract_transf_matrix[1][1] 0.034371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 21 21 CO CO5 . D 3 9TA B 1 13 13 9TA TMR . E 4 MG B 1 23 23 MG MG2 . F 2 CO B 1 22 22 CO NCO . G 5 HOH A 1 101 101 HOH HOH . G 5 HOH A 2 104 104 HOH HOH . G 5 HOH A 3 105 105 HOH HOH . G 5 HOH A 4 107 107 HOH HOH . G 5 HOH A 5 108 108 HOH HOH . G 5 HOH A 6 109 109 HOH HOH . G 5 HOH A 7 113 113 HOH HOH . G 5 HOH A 8 114 114 HOH HOH . G 5 HOH A 9 119 119 HOH HOH . G 5 HOH A 10 120 120 HOH HOH . G 5 HOH A 11 123 21 HOH CO5 . G 5 HOH A 12 124 21 HOH CO5 . G 5 HOH A 13 125 21 HOH CO5 . G 5 HOH A 14 126 21 HOH CO5 . G 5 HOH A 15 127 21 HOH CO5 . H 5 HOH B 1 102 102 HOH HOH . H 5 HOH B 2 103 103 HOH HOH . H 5 HOH B 3 106 106 HOH HOH . H 5 HOH B 4 110 110 HOH HOH . H 5 HOH B 5 111 111 HOH HOH . H 5 HOH B 6 112 112 HOH HOH . H 5 HOH B 7 115 115 HOH HOH . H 5 HOH B 8 116 116 HOH HOH . H 5 HOH B 9 117 117 HOH HOH . H 5 HOH B 10 118 118 HOH HOH . H 5 HOH B 11 121 22 HOH NCO . H 5 HOH B 12 122 22 HOH NCO . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 16.037 _atom_site.Cartn_y 0 _atom_site.Cartn_z 20.091 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 68.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 23 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #