data_1FDI # _model_server_result.job_id AHdF-PgMwMKG7iezixrdZA _model_server_result.datetime_utc '2024-11-26 07:45:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 1FDI # _exptl.entry_id 1FDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FDI _cell.length_a 146.8 _cell.length_b 146.8 _cell.length_c 81.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 C FE2 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 C FE4 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A SG CYS 15 A CYS 15 1_555 C FE3 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 A SG CYS 42 A CYS 42 1_555 C FE1 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc5 A SE SEC 140 A SEC 140 1_555 F MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc6 D S12 MGD . A MGD 801 1_555 F MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc7 D S13 MGD . A MGD 801 1_555 F MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 E S12 MGD . A MGD 802 1_555 F MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc9 E S13 MGD . A MGD 802 1_555 F MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc10 F MO 6MO . A 6MO 803 1_555 B O1 NO2 . A NO2 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 383 n n FE1 S3 SF4 sing 384 n n FE1 S4 SF4 sing 385 n n FE2 S1 SF4 sing 386 n n FE2 S3 SF4 sing 387 n n FE2 S4 SF4 sing 388 n n FE3 S1 SF4 sing 389 n n FE3 S2 SF4 sing 390 n n FE3 S4 SF4 sing 391 n n FE4 S1 SF4 sing 392 n n FE4 S2 SF4 sing 393 n n FE4 S3 SF4 sing 394 n n # _atom_sites.entry_id 1FDI _atom_sites.fract_transf_matrix[1][1] 0.006812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO2 A 1 804 804 NO2 NO2 . C 3 SF4 A 1 800 800 SF4 FS4 . D 4 MGD A 1 801 801 MGD MGD . E 4 MGD A 1 802 802 MGD MGD . F 5 6MO A 1 803 803 6MO 6MO . G 6 HOH A 1 805 1 HOH HOH . G 6 HOH A 2 806 2 HOH HOH . G 6 HOH A 3 807 3 HOH HOH . G 6 HOH A 4 808 4 HOH HOH . G 6 HOH A 5 809 5 HOH HOH . G 6 HOH A 6 810 6 HOH HOH . G 6 HOH A 7 811 7 HOH HOH . G 6 HOH A 8 812 8 HOH HOH . G 6 HOH A 9 813 9 HOH HOH . G 6 HOH A 10 814 11 HOH HOH . G 6 HOH A 11 815 12 HOH HOH . G 6 HOH A 12 816 13 HOH HOH . G 6 HOH A 13 817 14 HOH HOH . G 6 HOH A 14 818 15 HOH HOH . G 6 HOH A 15 819 16 HOH HOH . G 6 HOH A 16 820 17 HOH HOH . G 6 HOH A 17 821 18 HOH HOH . G 6 HOH A 18 822 19 HOH HOH . G 6 HOH A 19 823 20 HOH HOH . G 6 HOH A 20 824 21 HOH HOH . G 6 HOH A 21 825 22 HOH HOH . G 6 HOH A 22 826 23 HOH HOH . G 6 HOH A 23 827 25 HOH HOH . G 6 HOH A 24 828 26 HOH HOH . G 6 HOH A 25 829 27 HOH HOH . G 6 HOH A 26 830 28 HOH HOH . G 6 HOH A 27 831 29 HOH HOH . G 6 HOH A 28 832 30 HOH HOH . G 6 HOH A 29 833 31 HOH HOH . G 6 HOH A 30 834 32 HOH HOH . G 6 HOH A 31 835 33 HOH HOH . G 6 HOH A 32 836 34 HOH HOH . G 6 HOH A 33 837 35 HOH HOH . G 6 HOH A 34 838 36 HOH HOH . G 6 HOH A 35 839 37 HOH HOH . G 6 HOH A 36 840 38 HOH HOH . G 6 HOH A 37 841 39 HOH HOH . G 6 HOH A 38 842 40 HOH HOH . G 6 HOH A 39 843 41 HOH HOH . G 6 HOH A 40 844 42 HOH HOH . G 6 HOH A 41 845 43 HOH HOH . G 6 HOH A 42 846 44 HOH HOH . G 6 HOH A 43 847 47 HOH HOH . G 6 HOH A 44 848 48 HOH HOH . G 6 HOH A 45 849 49 HOH HOH . G 6 HOH A 46 850 50 HOH HOH . G 6 HOH A 47 851 51 HOH HOH . G 6 HOH A 48 852 52 HOH HOH . G 6 HOH A 49 853 53 HOH HOH . G 6 HOH A 50 854 54 HOH HOH . G 6 HOH A 51 855 55 HOH HOH . G 6 HOH A 52 856 56 HOH HOH . G 6 HOH A 53 857 57 HOH HOH . G 6 HOH A 54 858 58 HOH HOH . G 6 HOH A 55 859 59 HOH HOH . G 6 HOH A 56 860 61 HOH HOH . G 6 HOH A 57 861 62 HOH HOH . G 6 HOH A 58 862 65 HOH HOH . G 6 HOH A 59 863 66 HOH HOH . G 6 HOH A 60 864 67 HOH HOH . G 6 HOH A 61 865 70 HOH HOH . G 6 HOH A 62 866 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 3 72.81 27.17 34.526 1 13.71 ? FE1 SF4 800 A 1 HETATM 2 FE FE2 SF4 . . . C 3 74.536 25.695 33.179 1 13.39 ? FE2 SF4 800 A 1 HETATM 3 FE FE3 SF4 . . . C 3 74.769 25.865 35.925 1 13.58 ? FE3 SF4 800 A 1 HETATM 4 FE FE4 SF4 . . . C 3 75.059 27.816 34.41 1 13.93 ? FE4 SF4 800 A 1 HETATM 5 S S1 SF4 . . . C 3 76.394 25.886 34.381 1 14.35 ? S1 SF4 800 A 1 HETATM 6 S S2 SF4 . . . C 3 73.835 27.981 36.312 1 14.08 ? S2 SF4 800 A 1 HETATM 7 S S3 SF4 . . . C 3 73.721 27.708 32.508 1 14.67 ? S3 SF4 800 A 1 HETATM 8 S S4 SF4 . . . C 3 73.072 24.908 34.81 1 14.46 ? S4 SF4 800 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #