data_1FDN # _model_server_result.job_id u9xn2u3aXTftd8aXPjMZAw _model_server_result.datetime_utc '2025-03-06 08:45:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":57}' # _entry.id 1FDN # _exptl.entry_id 1FDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FDN _cell.length_a 34.44 _cell.length_b 34.44 _cell.length_c 74.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 B FE3 SF4 . A SF4 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 B FE4 SF4 . A SF4 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 A SG CYS 14 A CYS 14 1_555 B FE2 SF4 . A SF4 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 A SG CYS 18 A CYS 18 1_555 C FE1 SF4 . A SF4 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 A SG CYS 37 A CYS 37 1_555 C FE3 SF4 . A SF4 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 A SG CYS 40 A CYS 40 1_555 C FE4 SF4 . A SF4 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc7 A SG CYS 43 A CYS 43 1_555 C FE2 SF4 . A SF4 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 A SG CYS 47 A CYS 47 1_555 B FE1 SF4 . A SF4 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 182 n n FE1 S3 SF4 sing 183 n n FE1 S4 SF4 sing 184 n n FE2 S1 SF4 sing 185 n n FE2 S3 SF4 sing 186 n n FE2 S4 SF4 sing 187 n n FE3 S1 SF4 sing 188 n n FE3 S2 SF4 sing 189 n n FE3 S4 SF4 sing 190 n n FE4 S1 SF4 sing 191 n n FE4 S2 SF4 sing 192 n n FE4 S3 SF4 sing 193 n n # _atom_sites.entry_id 1FDN _atom_sites.fract_transf_matrix[1][1] 0.029036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 56 56 SF4 FS4 . C 2 SF4 A 1 57 57 SF4 FS4 . D 3 HOH A 1 58 58 HOH HOH . D 3 HOH A 2 59 59 HOH HOH . D 3 HOH A 3 60 60 HOH HOH . D 3 HOH A 4 61 61 HOH HOH . D 3 HOH A 5 62 62 HOH HOH . D 3 HOH A 6 63 63 HOH HOH . D 3 HOH A 7 64 64 HOH HOH . D 3 HOH A 8 65 65 HOH HOH . D 3 HOH A 9 66 66 HOH HOH . D 3 HOH A 10 67 67 HOH HOH . D 3 HOH A 11 68 68 HOH HOH . D 3 HOH A 12 69 69 HOH HOH . D 3 HOH A 13 70 70 HOH HOH . D 3 HOH A 14 71 71 HOH HOH . D 3 HOH A 15 72 72 HOH HOH . D 3 HOH A 16 73 73 HOH HOH . D 3 HOH A 17 74 74 HOH HOH . D 3 HOH A 18 75 75 HOH HOH . D 3 HOH A 19 76 76 HOH HOH . D 3 HOH A 20 77 77 HOH HOH . D 3 HOH A 21 78 78 HOH HOH . D 3 HOH A 22 79 79 HOH HOH . D 3 HOH A 23 80 80 HOH HOH . D 3 HOH A 24 81 81 HOH HOH . D 3 HOH A 25 82 82 HOH HOH . D 3 HOH A 26 83 83 HOH HOH . D 3 HOH A 27 84 84 HOH HOH . D 3 HOH A 28 85 85 HOH HOH . D 3 HOH A 29 86 86 HOH HOH . D 3 HOH A 30 87 87 HOH HOH . D 3 HOH A 31 88 88 HOH HOH . D 3 HOH A 32 89 89 HOH HOH . D 3 HOH A 33 90 90 HOH HOH . D 3 HOH A 34 91 91 HOH HOH . D 3 HOH A 35 92 92 HOH HOH . D 3 HOH A 36 93 93 HOH HOH . D 3 HOH A 37 94 94 HOH HOH . D 3 HOH A 38 95 95 HOH HOH . D 3 HOH A 39 96 96 HOH HOH . D 3 HOH A 40 97 97 HOH HOH . D 3 HOH A 41 98 98 HOH HOH . D 3 HOH A 42 99 99 HOH HOH . D 3 HOH A 43 100 100 HOH HOH . D 3 HOH A 44 101 101 HOH HOH . D 3 HOH A 45 102 102 HOH HOH . D 3 HOH A 46 103 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 2 5.014 25.513 72.285 1 10.77 ? FE1 SF4 57 A 1 HETATM 2 FE FE2 SF4 . . . C 2 6.208 23.06 72.024 1 10.23 ? FE2 SF4 57 A 1 HETATM 3 FE FE3 SF4 . . . C 2 6.588 24.973 70.112 1 10.49 ? FE3 SF4 57 A 1 HETATM 4 FE FE4 SF4 . . . C 2 7.688 25.302 72.66 1 10.61 ? FE4 SF4 57 A 1 HETATM 5 S S1 SF4 . . . C 2 8.216 23.741 71.127 1 9.69 ? S1 SF4 57 A 1 HETATM 6 S S2 SF4 . . . C 2 6.636 26.83 71.364 1 9.97 ? S2 SF4 57 A 1 HETATM 7 S S3 SF4 . . . C 2 6.104 24.336 73.877 1 9.79 ? S3 SF4 57 A 1 HETATM 8 S S4 SF4 . . . C 2 4.631 23.969 70.683 1 9.39 ? S4 SF4 57 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 8 #