data_1FDO
#
_model_server_result.job_id            7cfOIWlegeKaJ88U6xjYLA 
_model_server_result.datetime_utc      '2024-10-10 22:36:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fdo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    1FDO 
#
_exptl.entry_id    1FDO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              740.557 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1FDO 
_cell.length_a            146.6 
_cell.length_b            146.6 
_cell.length_c            81.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 B FE2 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 B FE4 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc3 A SG CYS 15 A CYS 15 1_555 B FE3 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc4 A SG CYS 42 A CYS 42 1_555 B FE1 SF4 . A SF4 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc5 A SE SEC 140 A SEC 140 1_555 E MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc6 C S12 MGD . A MGD 801 1_555 E MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc7 C S13 MGD . A MGD 801 1_555 E MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc8 D S12 MGD . A MGD 802 1_555 E MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc9 D S13 MGD . A MGD 802 1_555 E MO 6MO . A 6MO 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc10 E MO 6MO . A 6MO 803 1_555 F O HOH . A HOH 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C20 H26 N10 O13 P2 S2' 
_chem_comp.formula_weight    740.557 
_chem_comp.id                MGD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B MGD doub 237 n n 
PB O2B MGD sing 238 n n 
PB O3B MGD sing 239 n n 
PB O5' MGD sing 240 n n 
O2B HOB2 MGD sing 241 n n 
O3B PA MGD sing 242 n n 
O3A PA MGD sing 243 n n 
O3A C10 MGD sing 244 n n 
PA O1A MGD doub 245 n n 
PA O2A MGD sing 246 n n 
O2A HOA2 MGD sing 247 n n 
O5' C5' MGD sing 248 n n 
C5' C4' MGD sing 249 n n 
C5' "H5'1" MGD sing 250 n n 
C5' "H5'2" MGD sing 251 n n 
C4' O4' MGD sing 252 n n 
C4' C3' MGD sing 253 n n 
C4' H4' MGD sing 254 n n 
O4' C1' MGD sing 255 n n 
C3' O3' MGD sing 256 n n 
C3' C2' MGD sing 257 n n 
C3' H3' MGD sing 258 n n 
O3' HO3' MGD sing 259 n n 
C2' O2' MGD sing 260 n n 
C2' C1' MGD sing 261 n n 
C2' H2' MGD sing 262 n n 
O2' HO2' MGD sing 263 n n 
C1' N9 MGD sing 264 n n 
C1' H1' MGD sing 265 n n 
N9 C8 MGD sing 266 n y 
N9 C4 MGD sing 267 n y 
C8 N7 MGD doub 268 n y 
C8 H8 MGD sing 269 n n 
N7 C5 MGD sing 270 n y 
C5 C6 MGD sing 271 n n 
C5 C4 MGD doub 272 n y 
C6 O6 MGD doub 273 n n 
C6 N1 MGD sing 274 n n 
N1 C2 MGD sing 275 n n 
N1 HN1 MGD sing 276 n n 
C2 N2 MGD sing 277 n n 
C2 N3 MGD doub 278 n n 
N2 HN21 MGD sing 279 n n 
N2 HN22 MGD sing 280 n n 
N3 C4 MGD sing 281 n n 
C10 C11 MGD sing 282 n n 
C10 H101 MGD sing 283 n n 
C10 H102 MGD sing 284 n n 
C11 O11 MGD sing 285 n n 
C11 C12 MGD sing 286 n n 
C11 H11 MGD sing 287 n n 
O11 C23 MGD sing 288 n n 
C12 S12 MGD sing 289 n n 
C12 C13 MGD doub 290 n n 
S12 H12 MGD sing 291 n n 
C13 S13 MGD sing 292 n n 
C13 C14 MGD sing 293 n n 
S13 H13 MGD sing 294 n n 
C14 N15 MGD sing 295 n n 
C14 C23 MGD sing 296 n n 
C14 H14 MGD sing 297 n n 
N15 C16 MGD sing 298 n n 
N15 H15 MGD sing 299 n n 
C16 C17 MGD sing 300 n n 
C16 C21 MGD doub 301 n n 
C17 O17 MGD doub 302 n n 
C17 N18 MGD sing 303 n n 
N18 C19 MGD sing 304 n n 
N18 H18 MGD sing 305 n n 
C19 N19 MGD sing 306 n n 
C19 N20 MGD doub 307 n n 
N19 H191 MGD sing 308 n n 
N19 H192 MGD sing 309 n n 
N20 C21 MGD sing 310 n n 
C21 N22 MGD sing 311 n n 
N22 C23 MGD sing 312 n n 
N22 H22 MGD sing 313 n n 
C23 H23 MGD sing 314 n n 
#
_atom_sites.entry_id                     1FDO 
_atom_sites.fract_transf_matrix[1][1]    0.006821 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 800 800 SF4 FS4 . 
C 3 MGD A 1 801 801 MGD MGD . 
D 3 MGD A 1 802 802 MGD MGD . 
E 4 6MO A 1 803 803 6MO 6MO . 
F 5 HOH A 1 804 1 HOH HOH . 
F 5 HOH A 2 805 2 HOH HOH . 
F 5 HOH A 3 806 3 HOH HOH . 
F 5 HOH A 4 807 4 HOH HOH . 
F 5 HOH A 5 808 5 HOH HOH . 
F 5 HOH A 6 809 6 HOH HOH . 
F 5 HOH A 7 810 7 HOH HOH . 
F 5 HOH A 8 811 8 HOH HOH . 
F 5 HOH A 9 812 9 HOH HOH . 
F 5 HOH A 10 813 11 HOH HOH . 
F 5 HOH A 11 814 12 HOH HOH . 
F 5 HOH A 12 815 13 HOH HOH . 
F 5 HOH A 13 816 14 HOH HOH . 
F 5 HOH A 14 817 15 HOH HOH . 
F 5 HOH A 15 818 16 HOH HOH . 
F 5 HOH A 16 819 17 HOH HOH . 
F 5 HOH A 17 820 18 HOH HOH . 
F 5 HOH A 18 821 19 HOH HOH . 
F 5 HOH A 19 822 20 HOH HOH . 
F 5 HOH A 20 823 21 HOH HOH . 
F 5 HOH A 21 824 22 HOH HOH . 
F 5 HOH A 22 825 23 HOH HOH . 
F 5 HOH A 23 826 25 HOH HOH . 
F 5 HOH A 24 827 26 HOH HOH . 
F 5 HOH A 25 828 27 HOH HOH . 
F 5 HOH A 26 829 28 HOH HOH . 
F 5 HOH A 27 830 29 HOH HOH . 
F 5 HOH A 28 831 30 HOH HOH . 
F 5 HOH A 29 832 31 HOH HOH . 
F 5 HOH A 30 833 32 HOH HOH . 
F 5 HOH A 31 834 33 HOH HOH . 
F 5 HOH A 32 835 34 HOH HOH . 
F 5 HOH A 33 836 35 HOH HOH . 
F 5 HOH A 34 837 36 HOH HOH . 
F 5 HOH A 35 838 37 HOH HOH . 
F 5 HOH A 36 839 38 HOH HOH . 
F 5 HOH A 37 840 39 HOH HOH . 
F 5 HOH A 38 841 40 HOH HOH . 
F 5 HOH A 39 842 41 HOH HOH . 
F 5 HOH A 40 843 42 HOH HOH . 
F 5 HOH A 41 844 43 HOH HOH . 
F 5 HOH A 42 845 44 HOH HOH . 
F 5 HOH A 43 846 47 HOH HOH . 
F 5 HOH A 44 847 48 HOH HOH . 
F 5 HOH A 45 848 49 HOH HOH . 
F 5 HOH A 46 849 50 HOH HOH . 
F 5 HOH A 47 850 51 HOH HOH . 
F 5 HOH A 48 851 52 HOH HOH . 
F 5 HOH A 49 852 53 HOH HOH . 
F 5 HOH A 50 853 54 HOH HOH . 
F 5 HOH A 51 854 55 HOH HOH . 
F 5 HOH A 52 855 56 HOH HOH . 
F 5 HOH A 53 856 57 HOH HOH . 
F 5 HOH A 54 857 58 HOH HOH . 
F 5 HOH A 55 858 59 HOH HOH . 
F 5 HOH A 56 859 61 HOH HOH . 
F 5 HOH A 57 860 62 HOH HOH . 
F 5 HOH A 58 861 63 HOH HOH . 
F 5 HOH A 59 862 64 HOH HOH . 
F 5 HOH A 60 863 65 HOH HOH . 
F 5 HOH A 61 864 66 HOH HOH . 
F 5 HOH A 62 865 67 HOH HOH . 
F 5 HOH A 63 866 70 HOH HOH . 
F 5 HOH A 64 867 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB MGD . . . D 3 76.352 41.696 31.651 1 17.69 ? PB MGD 802 A 1 
HETATM 2 O O1B MGD . . . D 3 75.056 41.17 32.039 1 17.72 ? O1B MGD 802 A 1 
HETATM 3 O O2B MGD . . . D 3 76.663 41.892 30.21 1 19.38 ? O2B MGD 802 A 1 
HETATM 4 O O3B MGD . . . D 3 77.46 40.71 32.197 1 19.05 ? O3B MGD 802 A 1 
HETATM 5 O O3A MGD . . . D 3 77.61 38.347 32.758 1 18.16 ? O3A MGD 802 A 1 
HETATM 6 P PA MGD . . . D 3 77.633 39.767 33.462 1 20.83 ? PA MGD 802 A 1 
HETATM 7 O O1A MGD . . . D 3 78.998 40.069 33.994 1 22.61 ? O1A MGD 802 A 1 
HETATM 8 O O2A MGD . . . D 3 76.457 39.952 34.347 1 19.45 ? O2A MGD 802 A 1 
HETATM 9 O O5' MGD . . . D 3 76.609 43.044 32.452 1 19.14 ? O5' MGD 802 A 1 
HETATM 10 C C5' MGD . . . D 3 76.72 43.061 33.863 1 18.38 ? C5' MGD 802 A 1 
HETATM 11 C C4' MGD . . . D 3 76.171 44.346 34.422 1 19.01 ? C4' MGD 802 A 1 
HETATM 12 O O4' MGD . . . D 3 77 45.456 34.195 1 19.84 ? O4' MGD 802 A 1 
HETATM 13 C C3' MGD . . . D 3 74.841 44.686 33.771 1 19.56 ? C3' MGD 802 A 1 
HETATM 14 O O3' MGD . . . D 3 73.841 44.494 34.758 1 18.21 ? O3' MGD 802 A 1 
HETATM 15 C C2' MGD . . . D 3 74.989 46.165 33.374 1 22.18 ? C2' MGD 802 A 1 
HETATM 16 O O2' MGD . . . D 3 73.848 46.98 33.699 1 24.31 ? O2' MGD 802 A 1 
HETATM 17 C C1' MGD . . . D 3 76.129 46.571 34.261 1 22.71 ? C1' MGD 802 A 1 
HETATM 18 N N9 MGD . . . D 3 76.695 47.885 33.835 1 24.53 ? N9 MGD 802 A 1 
HETATM 19 C C8 MGD . . . D 3 76.501 48.611 32.675 1 24.52 ? C8 MGD 802 A 1 
HETATM 20 N N7 MGD . . . D 3 77.144 49.758 32.686 1 25.46 ? N7 MGD 802 A 1 
HETATM 21 C C5 MGD . . . D 3 77.797 49.778 33.924 1 22.86 ? C5 MGD 802 A 1 
HETATM 22 C C6 MGD . . . D 3 78.643 50.735 34.532 1 23.67 ? C6 MGD 802 A 1 
HETATM 23 O O6 MGD . . . D 3 79.02 51.771 33.961 1 25.14 ? O6 MGD 802 A 1 
HETATM 24 N N1 MGD . . . D 3 79.079 50.398 35.798 1 22.07 ? N1 MGD 802 A 1 
HETATM 25 C C2 MGD . . . D 3 78.728 49.233 36.424 1 21.22 ? C2 MGD 802 A 1 
HETATM 26 N N2 MGD . . . D 3 79.173 48.973 37.656 1 20.7 ? N2 MGD 802 A 1 
HETATM 27 N N3 MGD . . . D 3 77.945 48.358 35.831 1 20.89 ? N3 MGD 802 A 1 
HETATM 28 C C4 MGD . . . D 3 77.516 48.661 34.614 1 21.99 ? C4 MGD 802 A 1 
HETATM 29 C C10 MGD . . . D 3 78.463 38.088 31.653 1 21.04 ? C10 MGD 802 A 1 
HETATM 30 C C11 MGD . . . D 3 78.548 36.588 31.399 1 24.97 ? C11 MGD 802 A 1 
HETATM 31 O O11 MGD . . . D 3 77.241 36.029 31.265 1 24.82 ? O11 MGD 802 A 1 
HETATM 32 C C12 MGD . . . D 3 79.376 36.268 30.158 1 26.24 ? C12 MGD 802 A 1 
HETATM 33 S S12 MGD . . . D 3 80.927 37.086 29.902 1 27.37 ? S12 MGD 802 A 1 
HETATM 34 C C13 MGD . . . D 3 78.937 35.257 29.269 1 25.56 ? C13 MGD 802 A 1 
HETATM 35 S S13 MGD . . . D 3 79.812 34.934 27.768 1 25.87 ? S13 MGD 802 A 1 
HETATM 36 C C14 MGD . . . D 3 77.665 34.484 29.564 1 25.24 ? C14 MGD 802 A 1 
HETATM 37 N N15 MGD . . . D 3 76.599 34.947 28.694 1 25.48 ? N15 MGD 802 A 1 
HETATM 38 C C16 MGD . . . D 3 75.327 34.585 29.088 1 25.3 ? C16 MGD 802 A 1 
HETATM 39 C C17 MGD . . . D 3 74.235 34.677 28.161 1 24.95 ? C17 MGD 802 A 1 
HETATM 40 O O17 MGD . . . D 3 74.401 34.871 26.952 1 22.56 ? O17 MGD 802 A 1 
HETATM 41 N N18 MGD . . . D 3 72.977 34.361 28.661 1 25.2 ? N18 MGD 802 A 1 
HETATM 42 C C19 MGD . . . D 3 72.792 33.964 29.96 1 24.86 ? C19 MGD 802 A 1 
HETATM 43 N N19 MGD . . . D 3 71.579 33.792 30.442 1 24.71 ? N19 MGD 802 A 1 
HETATM 44 N N20 MGD . . . D 3 73.819 33.856 30.785 1 25.71 ? N20 MGD 802 A 1 
HETATM 45 C C21 MGD . . . D 3 75.086 34.165 30.402 1 25.2 ? C21 MGD 802 A 1 
HETATM 46 N N22 MGD . . . D 3 76.093 34.017 31.309 1 24.42 ? N22 MGD 802 A 1 
HETATM 47 C C23 MGD . . . D 3 77.332 34.675 30.988 1 23.87 ? C23 MGD 802 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#