data_1FDV
#
_model_server_result.job_id            54z0EZE8kki93WADFh6_eQ 
_model_server_result.datetime_utc      '2024-11-13 16:58:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fdv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":363}' 
#
_entry.id    1FDV 
#
_exptl.entry_id    1FDV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.93 
_cell.angle_gamma         90 
_cell.entry_id            1FDV 
_cell.length_a            115.12 
_cell.length_b            79.11 
_cell.length_c            120.47 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     1FDV 
_atom_sites.fract_transf_matrix[1][1]    0.008687 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000293 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008306 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 401 401 SO4 SO4 . 
F 3 NAD A 1 361 361 NAD NAD . 
G 2 SO4 B 1 400 400 SO4 SO4 . 
H 3 NAD B 1 364 364 NAD NAD . 
I 2 SO4 C 1 403 403 SO4 SO4 . 
J 3 NAD C 1 363 363 NAD NAD . 
K 2 SO4 D 1 402 402 SO4 SO4 . 
L 3 NAD D 1 362 362 NAD NAD . 
M 4 HOH A 1 510 510 HOH HOH . 
M 4 HOH A 2 519 519 HOH HOH . 
M 4 HOH A 3 523 523 HOH HOH . 
M 4 HOH A 4 530 530 HOH HOH . 
M 4 HOH A 5 535 535 HOH HOH . 
M 4 HOH A 6 543 543 HOH HOH . 
M 4 HOH A 7 546 546 HOH HOH . 
M 4 HOH A 8 549 549 HOH HOH . 
N 4 HOH B 1 503 503 HOH HOH . 
N 4 HOH B 2 504 504 HOH HOH . 
N 4 HOH B 3 507 507 HOH HOH . 
N 4 HOH B 4 513 513 HOH HOH . 
N 4 HOH B 5 514 514 HOH HOH . 
N 4 HOH B 6 515 515 HOH HOH . 
N 4 HOH B 7 520 520 HOH HOH . 
N 4 HOH B 8 521 521 HOH HOH . 
N 4 HOH B 9 524 524 HOH HOH . 
N 4 HOH B 10 548 548 HOH HOH . 
N 4 HOH B 11 550 550 HOH HOH . 
O 4 HOH C 1 502 502 HOH HOH . 
O 4 HOH C 2 505 505 HOH HOH . 
O 4 HOH C 3 508 508 HOH HOH . 
O 4 HOH C 4 511 511 HOH HOH . 
O 4 HOH C 5 512 512 HOH HOH . 
O 4 HOH C 6 516 516 HOH HOH . 
O 4 HOH C 7 517 517 HOH HOH . 
O 4 HOH C 8 525 525 HOH HOH . 
O 4 HOH C 9 526 526 HOH HOH . 
O 4 HOH C 10 528 528 HOH HOH . 
O 4 HOH C 11 529 529 HOH HOH . 
O 4 HOH C 12 531 531 HOH HOH . 
O 4 HOH C 13 533 533 HOH HOH . 
O 4 HOH C 14 534 534 HOH HOH . 
O 4 HOH C 15 536 536 HOH HOH . 
O 4 HOH C 16 540 540 HOH HOH . 
O 4 HOH C 17 545 545 HOH HOH . 
O 4 HOH C 18 547 547 HOH HOH . 
P 4 HOH D 1 501 501 HOH HOH . 
P 4 HOH D 2 506 506 HOH HOH . 
P 4 HOH D 3 509 509 HOH HOH . 
P 4 HOH D 4 518 518 HOH HOH . 
P 4 HOH D 5 522 522 HOH HOH . 
P 4 HOH D 6 527 527 HOH HOH . 
P 4 HOH D 7 532 532 HOH HOH . 
P 4 HOH D 8 537 537 HOH HOH . 
P 4 HOH D 9 538 538 HOH HOH . 
P 4 HOH D 10 539 539 HOH HOH . 
P 4 HOH D 11 541 541 HOH HOH . 
P 4 HOH D 12 542 542 HOH HOH . 
P 4 HOH D 13 544 544 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . J 3 6.285 41.862 40.895 1 22.46 ? PA NAD 363 C 1 
HETATM 2 O O1A NAD . . . J 3 6.686 40.423 40.871 1 22.46 ? O1A NAD 363 C 1 
HETATM 3 O O2A NAD . . . J 3 5.596 42.498 42.003 1 22.46 ? O2A NAD 363 C 1 
HETATM 4 O O5B NAD . . . J 3 5.414 42.192 39.534 1 22.46 ? O5B NAD 363 C 1 
HETATM 5 C C5B NAD . . . J 3 4.441 43.248 39.612 1 22.46 ? C5B NAD 363 C 1 
HETATM 6 C C4B NAD . . . J 3 3.032 42.852 39.505 1 22.46 ? C4B NAD 363 C 1 
HETATM 7 O O4B NAD . . . J 3 2.653 42.432 38.166 1 22.46 ? O4B NAD 363 C 1 
HETATM 8 C C3B NAD . . . J 3 2.293 41.981 40.487 1 22.46 ? C3B NAD 363 C 1 
HETATM 9 O O3B NAD . . . J 3 1.394 42.702 41.331 1 22.46 ? O3B NAD 363 C 1 
HETATM 10 C C2B NAD . . . J 3 1.559 41.037 39.548 1 22.46 ? C2B NAD 363 C 1 
HETATM 11 O O2B NAD . . . J 3 0.426 40.448 40.069 1 22.46 ? O2B NAD 363 C 1 
HETATM 12 C C1B NAD . . . J 3 1.288 41.959 38.335 1 22.46 ? C1B NAD 363 C 1 
HETATM 13 N N9A NAD . . . J 3 0.728 41.174 37.212 1 22.46 ? N9A NAD 363 C 1 
HETATM 14 C C8A NAD . . . J 3 1.313 40.143 36.603 1 22.46 ? C8A NAD 363 C 1 
HETATM 15 N N7A NAD . . . J 3 0.476 39.604 35.719 1 22.46 ? N7A NAD 363 C 1 
HETATM 16 C C5A NAD . . . J 3 -0.655 40.295 35.773 1 22.46 ? C5A NAD 363 C 1 
HETATM 17 C C6A NAD . . . J 3 -1.891 40.23 35.088 1 22.46 ? C6A NAD 363 C 1 
HETATM 18 N N6A NAD . . . J 3 -2.081 39.308 34.147 1 22.46 ? N6A NAD 363 C 1 
HETATM 19 N N1A NAD . . . J 3 -2.902 41.088 35.364 1 22.46 ? N1A NAD 363 C 1 
HETATM 20 C C2A NAD . . . J 3 -2.698 42.021 36.288 1 22.46 ? C2A NAD 363 C 1 
HETATM 21 N N3A NAD . . . J 3 -1.539 42.141 36.947 1 22.46 ? N3A NAD 363 C 1 
HETATM 22 C C4A NAD . . . J 3 -0.509 41.306 36.719 1 22.46 ? C4A NAD 363 C 1 
HETATM 23 O O3 NAD . . . J 3 7.646 42.616 40.55 1 22.46 ? O3 NAD 363 C 1 
HETATM 24 P PN NAD . . . J 3 7.986 44.106 40.085 1 22.46 ? PN NAD 363 C 1 
HETATM 25 O O1N NAD . . . J 3 7.178 44.99 40.981 1 22.46 ? O1N NAD 363 C 1 
HETATM 26 O O2N NAD . . . J 3 9.433 44.196 39.919 1 22.46 ? O2N NAD 363 C 1 
HETATM 27 O O5D NAD . . . J 3 7.28 44.126 38.606 1 22.46 ? O5D NAD 363 C 1 
HETATM 28 C C5D NAD . . . J 3 6.628 45.284 38.134 1 22.46 ? C5D NAD 363 C 1 
HETATM 29 C C4D NAD . . . J 3 6.902 45.975 36.885 1 22.46 ? C4D NAD 363 C 1 
HETATM 30 O O4D NAD . . . J 3 8.075 46.77 36.809 1 22.46 ? O4D NAD 363 C 1 
HETATM 31 C C3D NAD . . . J 3 6.758 45.352 35.491 1 22.46 ? C3D NAD 363 C 1 
HETATM 32 O O3D NAD . . . J 3 6.114 46.204 34.543 1 22.46 ? O3D NAD 363 C 1 
HETATM 33 C C2D NAD . . . J 3 8.216 45.026 35.252 1 22.46 ? C2D NAD 363 C 1 
HETATM 34 O O2D NAD . . . J 3 8.514 44.7 33.934 1 22.46 ? O2D NAD 363 C 1 
HETATM 35 C C1D NAD . . . J 3 8.895 46.266 35.717 1 22.46 ? C1D NAD 363 C 1 
HETATM 36 N N1N NAD . . . J 3 10.339 46.279 35.973 1 22.46 ? N1N NAD 363 C 1 
HETATM 37 C C2N NAD . . . J 3 10.946 45.463 36.962 1 22.46 ? C2N NAD 363 C 1 
HETATM 38 C C3N NAD . . . J 3 12.331 45.469 37.18 1 22.46 ? C3N NAD 363 C 1 
HETATM 39 C C7N NAD . . . J 3 12.945 44.562 38.253 1 22.46 ? C7N NAD 363 C 1 
HETATM 40 O O7N NAD . . . J 3 14.132 44.416 38.468 1 22.46 ? O7N NAD 363 C 1 
HETATM 41 N N7N NAD . . . J 3 12.035 43.994 39.057 1 22.46 ? N7N NAD 363 C 1 
HETATM 42 C C4N NAD . . . J 3 13.114 46.346 36.432 1 22.46 ? C4N NAD 363 C 1 
HETATM 43 C C5N NAD . . . J 3 12.521 47.295 35.575 1 22.46 ? C5N NAD 363 C 1 
HETATM 44 C C6N NAD . . . J 3 11.151 47.246 35.324 1 22.46 ? C6N NAD 363 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           378 
_model_server_stats.encode_time_ms          88 
_model_server_stats.element_count           44 
#