data_1FDY
#
_model_server_result.job_id            IS37qN31Duv0OKKJwTwlBQ 
_model_server_result.datetime_utc      '2024-11-28 22:27:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":808}' 
#
_entry.id    1FDY 
#
_exptl.entry_id    1FDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-HYDROXYPYRUVIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1FDY 
_cell.length_a            121 
_cell.length_b            121 
_cell.length_c            196.82 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 165 A LYS 165 1_555 E C2 3PY . A 3PY 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 B NZ LYS 165 B LYS 165 1_555 F C2 3PY . B 3PY 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale3 C NZ LYS 165 C LYS 165 1_555 G C2 3PY . C 3PY 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 D NZ LYS 165 D LYS 165 1_555 H C2 3PY . D 3PY 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                3PY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-HYDROXYPYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 3PY doub 1 n n 
C1 O2 3PY sing 2 n n 
C1 C2 3PY sing 3 n n 
O2 HO2 3PY sing 4 n n 
C2 O3 3PY doub 5 n n 
C2 C3 3PY sing 6 n n 
C3 O4 3PY sing 7 n n 
C3 H31 3PY sing 8 n n 
C3 H32 3PY sing 9 n n 
O4 HO4 3PY sing 10 n n 
#
_atom_sites.entry_id                     1FDY 
_atom_sites.fract_transf_matrix[1][1]    0.008264 
_atom_sites.fract_transf_matrix[1][2]    0.004771 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 3PY A 1 802 802 3PY 3PY . 
F 2 3PY B 1 804 804 3PY 3PY . 
G 2 3PY C 1 806 806 3PY 3PY . 
H 2 3PY D 1 808 808 3PY 3PY . 
I 3 HOH A 1 401 401 HOH HOH . 
I 3 HOH A 2 402 402 HOH HOH . 
I 3 HOH A 3 403 403 HOH HOH . 
I 3 HOH A 4 404 404 HOH HOH . 
I 3 HOH A 5 405 405 HOH HOH . 
I 3 HOH A 6 406 406 HOH HOH . 
I 3 HOH A 7 407 407 HOH HOH . 
I 3 HOH A 8 408 408 HOH HOH . 
I 3 HOH A 9 409 409 HOH HOH . 
I 3 HOH A 10 410 410 HOH HOH . 
I 3 HOH A 11 500 500 HOH HOH . 
I 3 HOH A 12 503 503 HOH HOH . 
I 3 HOH A 13 510 510 HOH HOH . 
I 3 HOH A 14 512 512 HOH HOH . 
I 3 HOH A 15 513 513 HOH HOH . 
I 3 HOH A 16 520 520 HOH HOH . 
I 3 HOH A 17 521 521 HOH HOH . 
I 3 HOH A 18 524 524 HOH HOH . 
I 3 HOH A 19 525 525 HOH HOH . 
I 3 HOH A 20 526 526 HOH HOH . 
I 3 HOH A 21 529 529 HOH HOH . 
I 3 HOH A 22 530 530 HOH HOH . 
I 3 HOH A 23 532 532 HOH HOH . 
I 3 HOH A 24 535 535 HOH HOH . 
I 3 HOH A 25 540 540 HOH HOH . 
I 3 HOH A 26 546 546 HOH HOH . 
I 3 HOH A 27 548 548 HOH HOH . 
I 3 HOH A 28 551 551 HOH HOH . 
I 3 HOH A 29 552 552 HOH HOH . 
I 3 HOH A 30 553 553 HOH HOH . 
I 3 HOH A 31 554 554 HOH HOH . 
I 3 HOH A 32 558 558 HOH HOH . 
I 3 HOH A 33 562 562 HOH HOH . 
I 3 HOH A 34 563 563 HOH HOH . 
I 3 HOH A 35 567 567 HOH HOH . 
I 3 HOH A 36 572 572 HOH HOH . 
I 3 HOH A 37 574 574 HOH HOH . 
I 3 HOH A 38 577 577 HOH HOH . 
I 3 HOH A 39 578 578 HOH HOH . 
I 3 HOH A 40 582 582 HOH HOH . 
I 3 HOH A 41 588 588 HOH HOH . 
I 3 HOH A 42 591 591 HOH HOH . 
I 3 HOH A 43 592 592 HOH HOH . 
I 3 HOH A 44 599 599 HOH HOH . 
I 3 HOH A 45 600 600 HOH HOH . 
I 3 HOH A 46 602 602 HOH HOH . 
I 3 HOH A 47 603 603 HOH HOH . 
I 3 HOH A 48 604 604 HOH HOH . 
I 3 HOH A 49 608 608 HOH HOH . 
I 3 HOH A 50 614 614 HOH HOH . 
I 3 HOH A 51 617 617 HOH HOH . 
I 3 HOH A 52 618 618 HOH HOH . 
I 3 HOH A 53 620 620 HOH HOH . 
J 3 HOH B 1 411 411 HOH HOH . 
J 3 HOH B 2 412 412 HOH HOH . 
J 3 HOH B 3 413 413 HOH HOH . 
J 3 HOH B 4 414 414 HOH HOH . 
J 3 HOH B 5 415 415 HOH HOH . 
J 3 HOH B 6 416 416 HOH HOH . 
J 3 HOH B 7 417 417 HOH HOH . 
J 3 HOH B 8 419 419 HOH HOH . 
J 3 HOH B 9 420 420 HOH HOH . 
J 3 HOH B 10 421 421 HOH HOH . 
J 3 HOH B 11 425 425 HOH HOH . 
J 3 HOH B 12 450 450 HOH HOH . 
J 3 HOH B 13 458 458 HOH HOH . 
J 3 HOH B 14 459 459 HOH HOH . 
J 3 HOH B 15 501 501 HOH HOH . 
J 3 HOH B 16 506 506 HOH HOH . 
J 3 HOH B 17 508 508 HOH HOH . 
J 3 HOH B 18 511 511 HOH HOH . 
J 3 HOH B 19 514 514 HOH HOH . 
J 3 HOH B 20 519 519 HOH HOH . 
J 3 HOH B 21 522 522 HOH HOH . 
J 3 HOH B 22 531 531 HOH HOH . 
J 3 HOH B 23 533 533 HOH HOH . 
J 3 HOH B 24 537 537 HOH HOH . 
J 3 HOH B 25 542 542 HOH HOH . 
J 3 HOH B 26 550 550 HOH HOH . 
J 3 HOH B 27 555 555 HOH HOH . 
J 3 HOH B 28 557 557 HOH HOH . 
J 3 HOH B 29 571 571 HOH HOH . 
J 3 HOH B 30 573 573 HOH HOH . 
J 3 HOH B 31 580 580 HOH HOH . 
J 3 HOH B 32 586 586 HOH HOH . 
J 3 HOH B 33 593 593 HOH HOH . 
J 3 HOH B 34 598 598 HOH HOH . 
J 3 HOH B 35 607 607 HOH HOH . 
J 3 HOH B 36 619 619 HOH HOH . 
J 3 HOH B 37 621 621 HOH HOH . 
J 3 HOH B 38 622 622 HOH HOH . 
K 3 HOH C 1 426 426 HOH HOH . 
K 3 HOH C 2 427 427 HOH HOH . 
K 3 HOH C 3 428 428 HOH HOH . 
K 3 HOH C 4 429 429 HOH HOH . 
K 3 HOH C 5 431 431 HOH HOH . 
K 3 HOH C 6 432 432 HOH HOH . 
K 3 HOH C 7 436 436 HOH HOH . 
K 3 HOH C 8 437 437 HOH HOH . 
K 3 HOH C 9 439 439 HOH HOH . 
K 3 HOH C 10 505 505 HOH HOH . 
K 3 HOH C 11 515 515 HOH HOH . 
K 3 HOH C 12 518 518 HOH HOH . 
K 3 HOH C 13 544 544 HOH HOH . 
K 3 HOH C 14 547 547 HOH HOH . 
K 3 HOH C 15 560 560 HOH HOH . 
K 3 HOH C 16 561 561 HOH HOH . 
K 3 HOH C 17 565 565 HOH HOH . 
K 3 HOH C 18 568 568 HOH HOH . 
K 3 HOH C 19 569 569 HOH HOH . 
K 3 HOH C 20 585 585 HOH HOH . 
K 3 HOH C 21 587 587 HOH HOH . 
K 3 HOH C 22 589 589 HOH HOH . 
K 3 HOH C 23 590 590 HOH HOH . 
K 3 HOH C 24 594 594 HOH HOH . 
K 3 HOH C 25 595 595 HOH HOH . 
K 3 HOH C 26 596 596 HOH HOH . 
K 3 HOH C 27 605 605 HOH HOH . 
K 3 HOH C 28 606 606 HOH HOH . 
K 3 HOH C 29 610 610 HOH HOH . 
L 3 HOH D 1 418 418 HOH HOH . 
L 3 HOH D 2 441 441 HOH HOH . 
L 3 HOH D 3 442 442 HOH HOH . 
L 3 HOH D 4 443 443 HOH HOH . 
L 3 HOH D 5 445 445 HOH HOH . 
L 3 HOH D 6 446 446 HOH HOH . 
L 3 HOH D 7 447 447 HOH HOH . 
L 3 HOH D 8 448 448 HOH HOH . 
L 3 HOH D 9 449 449 HOH HOH . 
L 3 HOH D 10 451 451 HOH HOH . 
L 3 HOH D 11 453 453 HOH HOH . 
L 3 HOH D 12 455 455 HOH HOH . 
L 3 HOH D 13 456 456 HOH HOH . 
L 3 HOH D 14 457 457 HOH HOH . 
L 3 HOH D 15 502 502 HOH HOH . 
L 3 HOH D 16 504 504 HOH HOH . 
L 3 HOH D 17 507 507 HOH HOH . 
L 3 HOH D 18 509 509 HOH HOH . 
L 3 HOH D 19 516 516 HOH HOH . 
L 3 HOH D 20 517 517 HOH HOH . 
L 3 HOH D 21 523 523 HOH HOH . 
L 3 HOH D 22 527 527 HOH HOH . 
L 3 HOH D 23 528 528 HOH HOH . 
L 3 HOH D 24 534 534 HOH HOH . 
L 3 HOH D 25 536 536 HOH HOH . 
L 3 HOH D 26 538 538 HOH HOH . 
L 3 HOH D 27 539 539 HOH HOH . 
L 3 HOH D 28 541 541 HOH HOH . 
L 3 HOH D 29 543 543 HOH HOH . 
L 3 HOH D 30 545 545 HOH HOH . 
L 3 HOH D 31 549 549 HOH HOH . 
L 3 HOH D 32 556 556 HOH HOH . 
L 3 HOH D 33 559 559 HOH HOH . 
L 3 HOH D 34 564 564 HOH HOH . 
L 3 HOH D 35 566 566 HOH HOH . 
L 3 HOH D 36 570 570 HOH HOH . 
L 3 HOH D 37 575 575 HOH HOH . 
L 3 HOH D 38 576 576 HOH HOH . 
L 3 HOH D 39 579 579 HOH HOH . 
L 3 HOH D 40 581 581 HOH HOH . 
L 3 HOH D 41 583 583 HOH HOH . 
L 3 HOH D 42 584 584 HOH HOH . 
L 3 HOH D 43 597 597 HOH HOH . 
L 3 HOH D 44 601 601 HOH HOH . 
L 3 HOH D 45 609 609 HOH HOH . 
L 3 HOH D 46 611 611 HOH HOH . 
L 3 HOH D 47 612 612 HOH HOH . 
L 3 HOH D 48 613 613 HOH HOH . 
L 3 HOH D 49 615 615 HOH HOH . 
L 3 HOH D 50 616 616 HOH HOH . 
L 3 HOH D 51 623 623 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3PY . . . H 2 -17.878 -88.328 -7.129 1 23.07 ? C1 3PY 808 D 1 
HETATM 2 O O1 3PY . . . H 2 -17.85 -89.57 -7.229 1 25.07 ? O1 3PY 808 D 1 
HETATM 3 O O2 3PY . . . H 2 -18.983 -87.738 -7.055 1 23.49 ? O2 3PY 808 D 1 
HETATM 4 C C2 3PY . . . H 2 -16.46 -87.818 -7.108 1 24.26 ? C2 3PY 808 D 1 
HETATM 5 C C3 3PY . . . H 2 -15.433 -88.174 -8.181 1 43.08 ? C3 3PY 808 D 1 
HETATM 6 O O4 3PY . . . H 2 -15.796 -87.673 -9.256 1 61.97 ? O4 3PY 808 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#