data_1FE1
#
_model_server_result.job_id            '_Zeh20HOp5d-xwbceHTZtQ' 
_model_server_result.datetime_utc      '2024-11-04 22:38:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fe1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"YB","auth_seq_id":178}' 
#
_entry.id    1FE1 
#
_exptl.entry_id    1FE1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              871.2 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHEOPHYTIN A' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1FE1 
_cell.length_a            130.01 
_cell.length_b            226.72 
_cell.length_c            308.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FE1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 AA N N 
? 13 FA N N 
? 13 TB N N 
? 13 YB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CA UNK 81 A UNK 81 1_555 W CB TYR . A TYR 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.293 ? 
metalc ? metalc1 T MN MN . A MN 171 1_555 V MN MN . A MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? 
metalc ? metalc2 U MN MN . A MN 172 1_555 V MN MN . A MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
covale ? covale2 B CA UNK 76 B UNK 76 1_555 DA CB TYR . B TYR 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? 
covale ? covale3 J CA UNK 81 J UNK 81 1_555 PB CB TYR . J TYR 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
metalc ? metalc3 MB MN MN . J MN 171 1_555 OB MN MN . J MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? 
metalc ? metalc4 NB MN MN . J MN 172 1_555 OB MN MN . J MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
covale ? covale4 K CA UNK 76 K UNK 76 1_555 WB CB TYR . K TYR 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? 
#
_chem_comp.formula           'C55 H74 N4 O5' 
_chem_comp.formula_weight    871.2 
_chem_comp.id                PHO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHEOPHYTIN A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1FE1 
_atom_sites.fract_transf_matrix[1][1]    0.007692 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004411 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 10 MN A 1 170 1 MN MN . 
T 10 MN A 1 171 2 MN MN . 
U 10 MN A 1 172 3 MN MN . 
V 10 MN A 1 173 4 MN MN . 
W 11 TYR A 1 174 1 TYR TYR . 
X 12 CLA A 1 175 13 CLA CLA . 
Y 12 CLA A 1 176 15 CLA CLA . 
Z 12 CLA A 1 177 16 CLA CLA . 
AA 13 PHO A 1 178 18 PHO PHO . 
BA 12 CLA A 1 179 19 CLA CLA . 
CA 14 FE B 1 175 5 FE FE . 
DA 11 TYR B 1 176 2 TYR TYR . 
EA 12 CLA B 1 177 14 CLA CLA . 
FA 13 PHO B 1 178 17 PHO PHO . 
GA 12 CLA B 1 179 20 CLA CLA . 
HA 15 PLA B 1 180 49 PLA PLA . 
IA 12 CLA C 1 157 23 CLA CLA . 
JA 12 CLA C 1 158 24 CLA CLA . 
KA 12 CLA C 1 159 25 CLA CLA . 
LA 12 CLA C 1 160 26 CLA CLA . 
MA 12 CLA C 1 161 27 CLA CLA . 
NA 12 CLA C 1 162 28 CLA CLA . 
OA 12 CLA C 1 163 29 CLA CLA . 
PA 12 CLA C 1 164 30 CLA CLA . 
QA 12 CLA C 1 165 31 CLA CLA . 
RA 12 CLA C 1 166 32 CLA CLA . 
SA 12 CLA C 1 167 33 CLA CLA . 
TA 12 CLA C 1 168 34 CLA CLA . 
UA 12 CLA D 1 156 36 CLA CLA . 
VA 12 CLA D 1 157 37 CLA CLA . 
WA 12 CLA D 1 158 38 CLA CLA . 
XA 12 CLA D 1 159 39 CLA CLA . 
YA 12 CLA D 1 160 40 CLA CLA . 
ZA 12 CLA D 1 161 41 CLA CLA . 
AB 12 CLA D 1 162 42 CLA CLA . 
BB 12 CLA D 1 163 43 CLA CLA . 
CB 12 CLA D 1 164 44 CLA CLA . 
DB 12 CLA D 1 165 45 CLA CLA . 
EB 12 CLA D 1 166 46 CLA CLA . 
FB 12 CLA D 1 167 47 CLA CLA . 
GB 12 CLA D 1 168 48 CLA CLA . 
HB 16 HEM F 1 31 21 HEM HEM . 
IB 12 CLA G 1 313 35 CLA CLA . 
JB 17 CD H 1 116 6 CD CD . 
KB 16 HEM I 1 88 22 HEM HEM . 
LB 10 MN J 1 170 7 MN MN . 
MB 10 MN J 1 171 8 MN MN . 
NB 10 MN J 1 172 9 MN MN . 
OB 10 MN J 1 173 10 MN MN . 
PB 11 TYR J 1 174 3 TYR TYR . 
QB 12 CLA J 1 175 50 CLA CLA . 
RB 12 CLA J 1 176 52 CLA CLA . 
SB 12 CLA J 1 177 53 CLA CLA . 
TB 13 PHO J 1 178 55 PHO PHO . 
UB 12 CLA J 1 179 56 CLA CLA . 
VB 14 FE K 1 175 11 FE FE . 
WB 11 TYR K 1 176 4 TYR TYR . 
XB 12 CLA K 1 177 51 CLA CLA . 
YB 13 PHO K 1 178 54 PHO PHO . 
ZB 12 CLA K 1 179 57 CLA CLA . 
AC 15 PLA K 1 180 86 PLA PLA . 
BC 12 CLA L 1 157 60 CLA CLA . 
CC 12 CLA L 1 158 61 CLA CLA . 
DC 12 CLA L 1 159 62 CLA CLA . 
EC 12 CLA L 1 160 63 CLA CLA . 
FC 12 CLA L 1 161 64 CLA CLA . 
GC 12 CLA L 1 162 65 CLA CLA . 
HC 12 CLA L 1 163 66 CLA CLA . 
IC 12 CLA L 1 164 67 CLA CLA . 
JC 12 CLA L 1 165 68 CLA CLA . 
KC 12 CLA L 1 166 69 CLA CLA . 
LC 12 CLA L 1 167 70 CLA CLA . 
MC 12 CLA L 1 168 71 CLA CLA . 
NC 12 CLA M 1 156 73 CLA CLA . 
OC 12 CLA M 1 157 74 CLA CLA . 
PC 12 CLA M 1 158 75 CLA CLA . 
QC 12 CLA M 1 159 76 CLA CLA . 
RC 12 CLA M 1 160 77 CLA CLA . 
SC 12 CLA M 1 161 78 CLA CLA . 
TC 12 CLA M 1 162 79 CLA CLA . 
UC 12 CLA M 1 163 80 CLA CLA . 
VC 12 CLA M 1 164 81 CLA CLA . 
WC 12 CLA M 1 165 82 CLA CLA . 
XC 12 CLA M 1 166 83 CLA CLA . 
YC 12 CLA M 1 167 84 CLA CLA . 
ZC 12 CLA M 1 168 85 CLA CLA . 
AD 16 HEM O 1 58 58 HEM HEM . 
BD 12 CLA P 1 313 72 CLA CLA . 
CD 17 CD Q 1 116 12 CD CD . 
DD 16 HEM R 1 88 59 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA PHO . . . YB 13 9.554 2.099 -3.224 1 45.61 ? CHA PHO 178 K 1 
HETATM 2 C CHB PHO . . . YB 13 6.933 5.81 -1.414 1 44.69 ? CHB PHO 178 K 1 
HETATM 3 C CHC PHO . . . YB 13 6.801 3.611 2.837 1 44.58 ? CHC PHO 178 K 1 
HETATM 4 C CHD PHO . . . YB 13 9.776 0.159 1.16 1 44.01 ? CHD PHO 178 K 1 
HETATM 5 N NA PHO . . . YB 13 8.302 3.818 -2.012 1 44.57 ? NA PHO 178 K 1 
HETATM 6 C C1A PHO . . . YB 13 8.817 3.297 -3.198 1 46.4 ? C1A PHO 178 K 1 
HETATM 7 C C2A PHO . . . YB 13 8.516 4.222 -4.37 1 46.14 ? C2A PHO 178 K 1 
HETATM 8 C C3A PHO . . . YB 13 7.821 5.375 -3.762 1 45.41 ? C3A PHO 178 K 1 
HETATM 9 C C4A PHO . . . YB 13 7.702 5.034 -2.291 1 44.67 ? C4A PHO 178 K 1 
HETATM 10 N NB PHO . . . YB 13 7.038 4.465 0.593 1 46.8 ? NB PHO 178 K 1 
HETATM 11 C C1B PHO . . . YB 13 6.596 5.571 -0.081 1 45.18 ? C1B PHO 178 K 1 
HETATM 12 C C2B PHO . . . YB 13 5.762 6.35 0.716 1 45.02 ? C2B PHO 178 K 1 
HETATM 13 C C3B PHO . . . YB 13 5.666 5.698 1.969 1 45.56 ? C3B PHO 178 K 1 
HETATM 14 C C4B PHO . . . YB 13 6.475 4.549 1.849 1 45.01 ? C4B PHO 178 K 1 
HETATM 15 N NC PHO . . . YB 13 8.339 2.063 1.719 1 43.84 ? NC PHO 178 K 1 
HETATM 16 C C1C PHO . . . YB 13 7.633 2.493 2.818 1 42.88 ? C1C PHO 178 K 1 
HETATM 17 C C2C PHO . . . YB 13 7.848 1.591 4.021 1 40.41 ? C2C PHO 178 K 1 
HETATM 18 C C3C PHO . . . YB 13 8.762 0.535 3.522 1 40.07 ? C3C PHO 178 K 1 
HETATM 19 C C4C PHO . . . YB 13 9.022 0.913 2.066 1 43.32 ? C4C PHO 178 K 1 
HETATM 20 N ND PHO . . . YB 13 9.435 1.461 -0.871 1 45.08 ? ND PHO 178 K 1 
HETATM 21 C C1D PHO . . . YB 13 9.958 0.413 -0.201 1 46.22 ? C1D PHO 178 K 1 
HETATM 22 C C2D PHO . . . YB 13 10.675 -0.371 -1.08 1 47.28 ? C2D PHO 178 K 1 
HETATM 23 C C3D PHO . . . YB 13 10.635 0.158 -2.388 1 45.78 ? C3D PHO 178 K 1 
HETATM 24 C C4D PHO . . . YB 13 9.839 1.283 -2.142 1 45.19 ? C4D PHO 178 K 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#