data_1FFI # _model_server_result.job_id 9j9oTHH7Vpv0QieCTP4XLA _model_server_result.datetime_utc '2024-11-15 09:55:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ffi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1FFI # _exptl.entry_id 1FFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'SEQUENCE ANALOGOUS TO THE p2-NC PROCESSING SITE IN HIV-1' _entity.formula_weight 770.983 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FFI _cell.length_a 57.763 _cell.length_b 85.569 _cell.length_c 46.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FFI _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H68 N11 O8 1' _chem_comp.formula_weight 770.983 _chem_comp.id 2NC _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms p2/NC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 2NC doub 1 n n C CH3 2NC sing 2 n n CH3 H1 2NC sing 3 n n CH3 H2 2NC sing 4 n n CH3 H3 2NC sing 5 n n N CA 2NC sing 6 n n N H 2NC sing 7 n n CA C1 2NC sing 8 n n CA CB 2NC sing 9 n n CA HA 2NC sing 10 n n C1 O1 2NC doub 11 n n CB OG1 2NC sing 12 n n CB CG2 2NC sing 13 n n CB HB 2NC sing 14 n n OG1 HG1 2NC sing 15 n n CG2 HG21 2NC sing 16 n n CG2 HG22 2NC sing 17 n n CG2 HG23 2NC sing 18 n n N1 CA1 2NC sing 19 n n N1 H4 2NC sing 20 n n CA1 C2 2NC sing 21 n n CA1 CB1 2NC sing 22 n n CA1 HA1 2NC sing 23 n n C2 O2 2NC doub 24 n n CB1 CG1 2NC sing 25 n n CB1 CG21 2NC sing 26 n n CB1 HB1 2NC sing 27 n n CG1 CD1 2NC sing 28 n n CG1 HG12 2NC sing 29 n n CG1 HG13 2NC sing 30 n n CG21 HG24 2NC sing 31 n n CG21 HG25 2NC sing 32 n n CG21 HG26 2NC sing 33 n n CD1 HD11 2NC sing 34 n n CD1 HD12 2NC sing 35 n n CD1 HD13 2NC sing 36 n n N2 CA2 2NC sing 37 n n N2 H5 2NC sing 38 n n CA2 C3 2NC sing 39 n n CA2 CB2 2NC sing 40 n n CA2 HA2 2NC sing 41 n n CB2 CG 2NC sing 42 n n CB2 HB2 2NC sing 43 n n CB2 HB3 2NC sing 44 n n CG CD 2NC sing 45 n n CG HG2 2NC sing 46 n n CG HG3 2NC sing 47 n n CD CE 2NC sing 48 n n CD HD2 2NC sing 49 n n CD HD3 2NC sing 50 n n CE HE1 2NC sing 51 n n CE HE2 2NC sing 52 n n CE HE3 2NC sing 53 n n N3 CA3 2NC sing 54 n n N3 H6 2NC sing 55 n n CA3 C4 2NC sing 56 n n CA3 CB3 2NC sing 57 n n CA3 HA3 2NC sing 58 n n C4 O3 2NC doub 59 n n CB3 CG3 2NC sing 60 n n CB3 HB21 2NC sing 61 n n CB3 HB31 2NC sing 62 n n CG3 CD2 2NC sing 63 n n CG3 HG27 2NC sing 64 n n CG3 HG31 2NC sing 65 n n CD2 CE1 2NC sing 66 n n CD2 HD21 2NC sing 67 n n CD2 HD31 2NC sing 68 n n CE1 HE11 2NC sing 69 n n CE1 HE21 2NC sing 70 n n CE1 HE31 2NC sing 71 n n N4 CA4 2NC sing 72 n n N4 H7 2NC sing 73 n n CA4 C5 2NC sing 74 n n CA4 CB4 2NC sing 75 n n CA4 HA4 2NC sing 76 n n C5 O4 2NC doub 77 n n CB4 CG4 2NC sing 78 n n CB4 HB22 2NC sing 79 n n CB4 HB32 2NC sing 80 n n CG4 CD3 2NC sing 81 n n CG4 HG28 2NC sing 82 n n CG4 HG32 2NC sing 83 n n CD3 OE1 2NC doub 84 n n CD3 NE2 2NC sing 85 n n NE2 HE22 2NC sing 86 n n NE2 HE23 2NC sing 87 n n N5 CA5 2NC sing 88 n n N5 H8 2NC sing 89 n n CA5 C6 2NC sing 90 n n CA5 CB5 2NC sing 91 n n CA5 HA5 2NC sing 92 n n C6 O5 2NC doub 93 n n CB5 CG5 2NC sing 94 n n CB5 HB23 2NC sing 95 n n CB5 HB33 2NC sing 96 n n CG5 CD4 2NC sing 97 n n CG5 HG29 2NC sing 98 n n CG5 HG33 2NC sing 99 n n CD4 NE 2NC sing 100 n n CD4 HD22 2NC sing 101 n n CD4 HD32 2NC sing 102 n n NE CZ 2NC sing 103 n n NE HE 2NC sing 104 n n CZ NH1 2NC sing 105 n n CZ NH2 2NC doub 106 n n NH1 HH11 2NC sing 107 n n NH1 HH12 2NC sing 108 n n NH2 HH21 2NC sing 109 n n NH2 HH22 2NC sing 110 n n N6 HN1 2NC sing 111 n n N6 HN2 2NC sing 112 n n C N 2NC sing 113 n n C1 N1 2NC sing 114 n n C2 N2 2NC sing 115 n n C3 N3 2NC sing 116 n n C4 N4 2NC sing 117 n n C5 N5 2NC sing 118 n n C3 HC31 2NC sing 119 n n C3 HC32 2NC sing 120 n n C6 N6 2NC sing 121 n n # _atom_sites.entry_id 1FFI _atom_sites.fract_transf_matrix[1][1] 0.017312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2NC D 1 300 300 2NC ACE . D 3 HOH C 1 100 1 HOH HOH . D 3 HOH C 2 101 5 HOH HOH . D 3 HOH C 3 102 7 HOH HOH . D 3 HOH C 4 103 8 HOH HOH . D 3 HOH C 5 104 11 HOH HOH . D 3 HOH C 6 105 13 HOH HOH . D 3 HOH C 7 106 16 HOH HOH . D 3 HOH C 8 107 18 HOH HOH . D 3 HOH C 9 108 20 HOH HOH . D 3 HOH C 10 109 21 HOH HOH . D 3 HOH C 11 110 27 HOH HOH . D 3 HOH C 12 111 30 HOH HOH . D 3 HOH C 13 112 31 HOH HOH . D 3 HOH C 14 113 32 HOH HOH . D 3 HOH C 15 114 33 HOH HOH . D 3 HOH C 16 115 34 HOH HOH . D 3 HOH C 17 116 38 HOH HOH . D 3 HOH C 18 117 43 HOH HOH . D 3 HOH C 19 118 44 HOH HOH . D 3 HOH C 20 119 45 HOH HOH . D 3 HOH C 21 120 48 HOH HOH . D 3 HOH C 22 121 51 HOH HOH . D 3 HOH C 23 122 55 HOH HOH . D 3 HOH C 24 123 56 HOH HOH . D 3 HOH C 25 124 57 HOH HOH . D 3 HOH C 26 125 59 HOH HOH . D 3 HOH C 27 126 60 HOH HOH . D 3 HOH C 28 127 63 HOH HOH . D 3 HOH C 29 128 69 HOH HOH . D 3 HOH C 30 129 70 HOH HOH . D 3 HOH C 31 130 71 HOH HOH . D 3 HOH C 32 131 72 HOH HOH . D 3 HOH C 33 132 73 HOH HOH . D 3 HOH C 34 133 85 HOH HOH . D 3 HOH C 35 134 87 HOH HOH . D 3 HOH C 36 135 89 HOH HOH . D 3 HOH C 37 136 92 HOH HOH . D 3 HOH C 38 137 93 HOH HOH . D 3 HOH C 39 138 97 HOH HOH . D 3 HOH C 40 139 100 HOH HOH . D 3 HOH C 41 140 101 HOH HOH . D 3 HOH C 42 141 105 HOH HOH . D 3 HOH C 43 142 112 HOH HOH . D 3 HOH C 44 143 117 HOH HOH . D 3 HOH C 45 144 144 HOH HOH . D 3 HOH C 46 145 152 HOH HOH . D 3 HOH C 47 146 158 HOH HOH . D 3 HOH C 48 147 164 HOH HOH . D 3 HOH C 49 148 170 HOH HOH . D 3 HOH C 50 149 179 HOH HOH . D 3 HOH C 51 150 181 HOH HOH . D 3 HOH C 52 151 187 HOH HOH . D 3 HOH C 53 152 225 HOH HOH . D 3 HOH C 54 153 232 HOH HOH . D 3 HOH C 55 154 235 HOH HOH . D 3 HOH C 56 155 273 HOH HOH . E 3 HOH D 1 10 10 HOH HOH . E 3 HOH D 2 17 17 HOH HOH . E 3 HOH D 3 77 77 HOH HOH . E 3 HOH D 4 80 80 HOH HOH . E 3 HOH D 5 200 2 HOH HOH . E 3 HOH D 6 201 3 HOH HOH . E 3 HOH D 7 202 4 HOH HOH . E 3 HOH D 8 203 6 HOH HOH . E 3 HOH D 9 204 9 HOH HOH . E 3 HOH D 10 205 12 HOH HOH . E 3 HOH D 11 206 14 HOH HOH . E 3 HOH D 12 207 15 HOH HOH . E 3 HOH D 13 208 19 HOH HOH . E 3 HOH D 14 209 22 HOH HOH . E 3 HOH D 15 210 24 HOH HOH . E 3 HOH D 16 211 25 HOH HOH . E 3 HOH D 17 212 28 HOH HOH . E 3 HOH D 18 213 37 HOH HOH . E 3 HOH D 19 214 41 HOH HOH . E 3 HOH D 20 215 42 HOH HOH . E 3 HOH D 21 216 49 HOH HOH . E 3 HOH D 22 217 52 HOH HOH . E 3 HOH D 23 218 53 HOH HOH . E 3 HOH D 24 219 54 HOH HOH . E 3 HOH D 25 220 58 HOH HOH . E 3 HOH D 26 221 62 HOH HOH . E 3 HOH D 27 222 64 HOH HOH . E 3 HOH D 28 223 65 HOH HOH . E 3 HOH D 29 224 66 HOH HOH . E 3 HOH D 30 225 68 HOH HOH . E 3 HOH D 31 226 74 HOH HOH . E 3 HOH D 32 227 76 HOH HOH . E 3 HOH D 33 228 78 HOH HOH . E 3 HOH D 34 229 79 HOH HOH . E 3 HOH D 35 230 81 HOH HOH . E 3 HOH D 36 231 86 HOH HOH . E 3 HOH D 37 232 88 HOH HOH . E 3 HOH D 38 233 90 HOH HOH . E 3 HOH D 39 234 91 HOH HOH . E 3 HOH D 40 235 96 HOH HOH . E 3 HOH D 41 236 99 HOH HOH . E 3 HOH D 42 237 103 HOH HOH . E 3 HOH D 43 238 108 HOH HOH . E 3 HOH D 44 239 109 HOH HOH . E 3 HOH D 45 240 110 HOH HOH . E 3 HOH D 46 241 114 HOH HOH . E 3 HOH D 47 242 121 HOH HOH . E 3 HOH D 48 243 134 HOH HOH . E 3 HOH D 49 244 145 HOH HOH . E 3 HOH D 50 245 154 HOH HOH . E 3 HOH D 51 246 168 HOH HOH . E 3 HOH D 52 247 174 HOH HOH . E 3 HOH D 53 248 176 HOH HOH . E 3 HOH D 54 249 177 HOH HOH . E 3 HOH D 55 250 182 HOH HOH . E 3 HOH D 56 251 198 HOH HOH . E 3 HOH D 57 252 199 HOH HOH . E 3 HOH D 58 253 213 HOH HOH . E 3 HOH D 59 254 294 HOH HOH . E 3 HOH D 60 255 116 HOH HOH . E 3 HOH D 61 256 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2NC . . . C 2 23.357 24.541 19.654 1 19.48 ? C 2NC 300 D 1 HETATM 2 O O 2NC . . . C 2 23.006 25.063 20.712 1 21.23 ? O 2NC 300 D 1 HETATM 3 C CH3 2NC . . . C 2 23.874 23.116 19.548 1 20.59 ? CH3 2NC 300 D 1 HETATM 4 N N 2NC . . . C 2 23.333 25.171 18.484 1 17.17 ? N 2NC 300 D 1 HETATM 5 C CA 2NC . . . C 2 22.875 26.546 18.355 1 14.46 ? CA 2NC 300 D 1 HETATM 6 C C1 2NC . . . C 2 21.467 26.65 17.763 1 11.74 ? C1 2NC 300 D 1 HETATM 7 O O1 2NC . . . C 2 20.793 27.667 17.914 1 9.75 ? O1 2NC 300 D 1 HETATM 8 C CB 2NC . . . C 2 23.869 27.377 17.521 1 14.84 ? CB 2NC 300 D 1 HETATM 9 O OG1 2NC . . . C 2 24.027 26.8 16.215 1 15.78 ? OG1 2NC 300 D 1 HETATM 10 C CG2 2NC . . . C 2 25.231 27.417 18.228 1 17.02 ? CG2 2NC 300 D 1 HETATM 11 N N1 2NC . . . C 2 21.024 25.593 17.093 1 10.24 ? N1 2NC 300 D 1 HETATM 12 C CA1 2NC . . . C 2 19.696 25.579 16.495 1 9.7 ? CA1 2NC 300 D 1 HETATM 13 C C2 2NC . . . C 2 18.927 24.454 17.182 1 10.47 ? C2 2NC 300 D 1 HETATM 14 O O2 2NC . . . C 2 19.082 23.282 16.836 1 11.86 ? O2 2NC 300 D 1 HETATM 15 C CB1 2NC . . . C 2 19.77 25.338 14.966 1 8.88 ? CB1 2NC 300 D 1 HETATM 16 C CG1 2NC . . . C 2 20.757 26.319 14.321 1 9.08 ? CG1 2NC 300 D 1 HETATM 17 C CG21 2NC . . . C 2 18.386 25.486 14.342 1 9.67 ? CG21 2NC 300 D 1 HETATM 18 C CD1 2NC . . . C 2 20.385 27.789 14.474 1 8.12 ? CD1 2NC 300 D 1 HETATM 19 N N2 2NC . . . C 2 18.105 24.809 18.164 1 8.87 ? N2 2NC 300 D 1 HETATM 20 C CA2 2NC . . . C 2 17.368 23.802 18.91 1 8.01 ? CA2 2NC 300 D 1 HETATM 21 C C3 2NC . . . C 2 15.909 23.554 18.587 1 9.38 ? C3 2NC 300 D 1 HETATM 22 C CB2 2NC . . . C 2 17.561 23.989 20.413 1 7.92 ? CB2 2NC 300 D 1 HETATM 23 C CG 2NC . . . C 2 19.024 23.985 20.842 1 8.66 ? CG 2NC 300 D 1 HETATM 24 C CD 2NC . . . C 2 19.787 22.746 20.339 1 9.58 ? CD 2NC 300 D 1 HETATM 25 C CE 2NC . . . C 2 19.133 21.44 20.812 1 10.08 ? CE 2NC 300 D 1 HETATM 26 N N3 2NC . . . C 2 15.661 23.283 17.31 1 11.73 ? N3 2NC 300 D 1 HETATM 27 C CA3 2NC . . . C 2 14.333 22.917 16.843 1 11.25 ? CA3 2NC 300 D 1 HETATM 28 C C4 2NC . . . C 2 14.245 21.443 17.255 1 11.44 ? C4 2NC 300 D 1 HETATM 29 O O3 2NC . . . C 2 15.237 20.711 17.184 1 12.97 ? O3 2NC 300 D 1 HETATM 30 C CB3 2NC . . . C 2 14.257 23.049 15.314 1 12.17 ? CB3 2NC 300 D 1 HETATM 31 C CG3 2NC . . . C 2 13.048 22.385 14.654 1 14.11 ? CG3 2NC 300 D 1 HETATM 32 C CD2 2NC . . . C 2 13.414 21.056 13.991 1 16.18 ? CD2 2NC 300 D 1 HETATM 33 C CE1 2NC . . . C 2 14.352 21.266 12.813 1 15.6 ? CE1 2NC 300 D 1 HETATM 34 N N4 2NC . . . C 2 13.091 21.015 17.741 1 10.23 ? N4 2NC 300 D 1 HETATM 35 C CA4 2NC . . . C 2 12.94 19.628 18.148 1 8.74 ? CA4 2NC 300 D 1 HETATM 36 C C5 2NC . . . C 2 11.513 19.159 17.898 1 8.89 ? C5 2NC 300 D 1 HETATM 37 O O4 2NC . . . C 2 10.549 19.864 18.195 1 8.39 ? O4 2NC 300 D 1 HETATM 38 C CB4 2NC . . . C 2 13.363 19.457 19.618 1 8.35 ? CB4 2NC 300 D 1 HETATM 39 C CG4 2NC . . . C 2 13.21 18.045 20.183 1 8.09 ? CG4 2NC 300 D 1 HETATM 40 C CD3 2NC . . . C 2 11.81 17.78 20.709 1 9.35 ? CD3 2NC 300 D 1 HETATM 41 O OE1 2NC . . . C 2 11.152 18.686 21.215 1 9.45 ? OE1 2NC 300 D 1 HETATM 42 N NE2 2NC . . . C 2 11.343 16.543 20.579 1 8.48 ? NE2 2NC 300 D 1 HETATM 43 N N5 2NC . . . C 2 11.398 17.977 17.304 1 11.11 ? N5 2NC 300 D 1 HETATM 44 C CA5 2NC . . . C 2 10.109 17.375 16.979 1 13.05 ? CA5 2NC 300 D 1 HETATM 45 C C6 2NC . . . C 2 10.001 16.012 17.659 1 12.62 ? C6 2NC 300 D 1 HETATM 46 O O5 2NC . . . C 2 11.001 15.269 17.639 1 11.59 ? O5 2NC 300 D 1 HETATM 47 C CB5 2NC . . . C 2 9.983 17.189 15.466 1 15.91 ? CB5 2NC 300 D 1 HETATM 48 C CG5 2NC . . . C 2 10.283 18.426 14.636 1 23.47 ? CG5 2NC 300 D 1 HETATM 49 C CD4 2NC . . . C 2 10.427 18.064 13.161 1 28.95 ? CD4 2NC 300 D 1 HETATM 50 N NE 2NC . . . C 2 11.499 17.093 12.927 1 34.81 ? NE 2NC 300 D 1 HETATM 51 C CZ 2NC . . . C 2 11.58 16.295 11.861 1 37.06 ? CZ 2NC 300 D 1 HETATM 52 N NH1 2NC . . . C 2 10.649 16.341 10.913 1 38.86 ? NH1 2NC 300 D 1 HETATM 53 N NH2 2NC . . . C 2 12.593 15.448 11.742 1 37.52 ? NH2 2NC 300 D 1 HETATM 54 N N6 2NC . . . C 2 8.918 15.694 18.193 1 14.76 ? N6 2NC 300 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 54 #