data_1FFW # _model_server_result.job_id wo0zzMV6dDicTh5rUrTiVA _model_server_result.datetime_utc '2024-10-11 12:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ffw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":330}' # _entry.id 1FFW # _exptl.entry_id 1FFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.974 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IMIDO DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FFW _cell.length_a 159.3 _cell.length_b 53.4 _cell.length_c 77.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1 C,D,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MN MN . A MN 1 1_555 A OD1 ASP 12 A ASP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 E MN MN . A MN 1 1_555 A OD2 ASP 56 A ASP 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc3 E MN MN . A MN 1 1_555 A O ASN 58 A ASN 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc4 C OD1 ASP 12 C ASP 13 1_555 G MN MN . C MN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc5 C OD2 ASP 56 C ASP 57 1_555 G MN MN . C MN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc6 C O ASN 58 C ASN 59 1_555 G MN MN . C MN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'H3 N O6 P2 -2' _chem_comp.formula_weight 174.974 _chem_comp.id PON _chem_comp.mon_nstd_flag . _chem_comp.name 'IMIDO DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 PON doub 260 n n P1 O2 PON sing 261 n n P1 O3 PON sing 262 n n P1 O4 PON sing 263 n n O2 HO2 PON sing 264 n n O3 P2 PON sing 265 n n P2 O5 PON sing 266 n n P2 O6 PON sing 267 n n P2 N7 PON doub 268 n n O5 HO5 PON sing 269 n n N7 H7 PON sing 270 n n # _atom_sites.entry_id 1FFW _atom_sites.fract_transf_matrix[1][1] 0.006277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 1 1 MN MN . F 4 PON A 1 330 3 PON IMI . G 3 MN C 1 130 2 MN MN . H 5 HOH A 1 331 4 HOH HOH . H 5 HOH A 2 332 5 HOH HOH . H 5 HOH A 3 333 6 HOH HOH . H 5 HOH A 4 334 7 HOH HOH . H 5 HOH A 5 335 8 HOH HOH . H 5 HOH A 6 336 13 HOH HOH . H 5 HOH A 7 337 17 HOH HOH . H 5 HOH A 8 338 26 HOH HOH . H 5 HOH A 9 339 27 HOH HOH . H 5 HOH A 10 340 34 HOH HOH . H 5 HOH A 11 341 35 HOH HOH . H 5 HOH A 12 342 37 HOH HOH . H 5 HOH A 13 343 38 HOH HOH . H 5 HOH A 14 344 40 HOH HOH . H 5 HOH A 15 345 42 HOH HOH . H 5 HOH A 16 346 45 HOH HOH . H 5 HOH A 17 347 46 HOH HOH . H 5 HOH A 18 348 47 HOH HOH . H 5 HOH A 19 349 56 HOH HOH . H 5 HOH A 20 350 63 HOH HOH . H 5 HOH A 21 351 64 HOH HOH . H 5 HOH A 22 352 65 HOH HOH . H 5 HOH A 23 353 70 HOH HOH . H 5 HOH A 24 354 73 HOH HOH . H 5 HOH A 25 355 74 HOH HOH . H 5 HOH A 26 356 76 HOH HOH . H 5 HOH A 27 357 81 HOH HOH . H 5 HOH A 28 358 84 HOH HOH . H 5 HOH A 29 359 87 HOH HOH . H 5 HOH A 30 360 93 HOH HOH . H 5 HOH A 31 361 94 HOH HOH . H 5 HOH A 32 362 96 HOH HOH . H 5 HOH A 33 363 97 HOH HOH . H 5 HOH A 34 364 98 HOH HOH . H 5 HOH A 35 365 100 HOH HOH . H 5 HOH A 36 366 102 HOH HOH . H 5 HOH A 37 367 104 HOH HOH . H 5 HOH A 38 368 107 HOH HOH . H 5 HOH A 39 369 114 HOH HOH . H 5 HOH A 40 370 116 HOH HOH . H 5 HOH A 41 371 118 HOH HOH . H 5 HOH A 42 372 119 HOH HOH . H 5 HOH A 43 373 120 HOH HOH . H 5 HOH A 44 374 123 HOH HOH . H 5 HOH A 45 375 124 HOH HOH . H 5 HOH A 46 376 130 HOH HOH . H 5 HOH A 47 377 132 HOH HOH . H 5 HOH A 48 378 133 HOH HOH . H 5 HOH A 49 379 134 HOH HOH . H 5 HOH A 50 380 136 HOH HOH . H 5 HOH A 51 381 142 HOH HOH . H 5 HOH A 52 382 146 HOH HOH . H 5 HOH A 53 383 147 HOH HOH . H 5 HOH A 54 384 151 HOH HOH . H 5 HOH A 55 385 157 HOH HOH . H 5 HOH A 56 386 158 HOH HOH . H 5 HOH A 57 387 160 HOH HOH . H 5 HOH A 58 388 162 HOH HOH . H 5 HOH A 59 389 164 HOH HOH . H 5 HOH A 60 390 165 HOH HOH . H 5 HOH A 61 391 166 HOH HOH . I 5 HOH B 1 258 12 HOH HOH . I 5 HOH B 2 259 15 HOH HOH . I 5 HOH B 3 260 18 HOH HOH . I 5 HOH B 4 261 30 HOH HOH . I 5 HOH B 5 262 55 HOH HOH . I 5 HOH B 6 263 57 HOH HOH . I 5 HOH B 7 264 62 HOH HOH . I 5 HOH B 8 265 67 HOH HOH . I 5 HOH B 9 266 68 HOH HOH . I 5 HOH B 10 267 78 HOH HOH . I 5 HOH B 11 268 82 HOH HOH . I 5 HOH B 12 269 89 HOH HOH . I 5 HOH B 13 270 111 HOH HOH . I 5 HOH B 14 271 112 HOH HOH . I 5 HOH B 15 272 115 HOH HOH . I 5 HOH B 16 273 117 HOH HOH . I 5 HOH B 17 274 126 HOH HOH . I 5 HOH B 18 275 128 HOH HOH . I 5 HOH B 19 276 129 HOH HOH . I 5 HOH B 20 277 135 HOH HOH . I 5 HOH B 21 278 139 HOH HOH . I 5 HOH B 22 279 141 HOH HOH . I 5 HOH B 23 280 145 HOH HOH . I 5 HOH B 24 281 148 HOH HOH . I 5 HOH B 25 282 152 HOH HOH . I 5 HOH B 26 283 155 HOH HOH . J 5 HOH C 1 131 9 HOH HOH . J 5 HOH C 2 132 10 HOH HOH . J 5 HOH C 3 133 11 HOH HOH . J 5 HOH C 4 134 14 HOH HOH . J 5 HOH C 5 135 16 HOH HOH . J 5 HOH C 6 136 19 HOH HOH . J 5 HOH C 7 137 20 HOH HOH . J 5 HOH C 8 138 22 HOH HOH . J 5 HOH C 9 139 23 HOH HOH . J 5 HOH C 10 140 24 HOH HOH . J 5 HOH C 11 141 28 HOH HOH . J 5 HOH C 12 142 29 HOH HOH . J 5 HOH C 13 143 31 HOH HOH . J 5 HOH C 14 144 33 HOH HOH . J 5 HOH C 15 145 43 HOH HOH . J 5 HOH C 16 146 49 HOH HOH . J 5 HOH C 17 147 50 HOH HOH . J 5 HOH C 18 148 51 HOH HOH . J 5 HOH C 19 149 52 HOH HOH . J 5 HOH C 20 150 54 HOH HOH . J 5 HOH C 21 151 58 HOH HOH . J 5 HOH C 22 152 59 HOH HOH . J 5 HOH C 23 153 60 HOH HOH . J 5 HOH C 24 154 61 HOH HOH . J 5 HOH C 25 155 66 HOH HOH . J 5 HOH C 26 156 71 HOH HOH . J 5 HOH C 27 157 72 HOH HOH . J 5 HOH C 28 158 77 HOH HOH . J 5 HOH C 29 159 79 HOH HOH . J 5 HOH C 30 160 80 HOH HOH . J 5 HOH C 31 161 83 HOH HOH . J 5 HOH C 32 162 85 HOH HOH . J 5 HOH C 33 163 86 HOH HOH . J 5 HOH C 34 164 88 HOH HOH . J 5 HOH C 35 165 90 HOH HOH . J 5 HOH C 36 166 92 HOH HOH . J 5 HOH C 37 167 99 HOH HOH . J 5 HOH C 38 168 101 HOH HOH . J 5 HOH C 39 169 103 HOH HOH . J 5 HOH C 40 170 108 HOH HOH . J 5 HOH C 41 171 109 HOH HOH . J 5 HOH C 42 172 110 HOH HOH . J 5 HOH C 43 173 113 HOH HOH . J 5 HOH C 44 174 127 HOH HOH . J 5 HOH C 45 175 137 HOH HOH . J 5 HOH C 46 176 143 HOH HOH . J 5 HOH C 47 177 149 HOH HOH . J 5 HOH C 48 178 153 HOH HOH . J 5 HOH C 49 179 159 HOH HOH . J 5 HOH C 50 180 161 HOH HOH . J 5 HOH C 51 181 163 HOH HOH . J 5 HOH C 52 182 167 HOH HOH . K 5 HOH D 1 258 21 HOH HOH . K 5 HOH D 2 259 25 HOH HOH . K 5 HOH D 3 260 32 HOH HOH . K 5 HOH D 4 261 36 HOH HOH . K 5 HOH D 5 262 39 HOH HOH . K 5 HOH D 6 263 41 HOH HOH . K 5 HOH D 7 264 44 HOH HOH . K 5 HOH D 8 265 48 HOH HOH . K 5 HOH D 9 266 53 HOH HOH . K 5 HOH D 10 267 69 HOH HOH . K 5 HOH D 11 268 75 HOH HOH . K 5 HOH D 12 269 91 HOH HOH . K 5 HOH D 13 270 95 HOH HOH . K 5 HOH D 14 271 105 HOH HOH . K 5 HOH D 15 272 106 HOH HOH . K 5 HOH D 16 273 121 HOH HOH . K 5 HOH D 17 274 122 HOH HOH . K 5 HOH D 18 275 125 HOH HOH . K 5 HOH D 19 276 131 HOH HOH . K 5 HOH D 20 277 138 HOH HOH . K 5 HOH D 21 278 140 HOH HOH . K 5 HOH D 22 279 144 HOH HOH . K 5 HOH D 23 280 150 HOH HOH . K 5 HOH D 24 281 154 HOH HOH . K 5 HOH D 25 282 156 HOH HOH . K 5 HOH D 26 283 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 PON . . . F 4 -3.045 3.442 30.044 1 112.13 ? P1 PON 330 A 1 HETATM 2 O O1 PON . . . F 4 -2.405 2.086 29.942 1 111.36 ? O1 PON 330 A 1 HETATM 3 O O2 PON . . . F 4 -4.492 3.551 30.403 1 112.33 ? O2 PON 330 A 1 HETATM 4 O O3 PON . . . F 4 -2.715 4.29 28.741 1 110.93 ? O3 PON 330 A 1 HETATM 5 O O4 PON . . . F 4 -2.302 4.218 31.215 1 111.96 ? O4 PON 330 A 1 HETATM 6 P P2 PON . . . F 4 -2.134 5.403 27.829 1 110.43 ? P2 PON 330 A 1 HETATM 7 O O5 PON . . . F 4 -2.51 5.214 26.415 1 109.8 ? O5 PON 330 A 1 HETATM 8 O O6 PON . . . F 4 -0.601 5.364 27.834 1 110.31 ? O6 PON 330 A 1 HETATM 9 N N7 PON . . . F 4 -2.516 6.767 28.29 1 109.26 ? N7 PON 330 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #