data_1FG3 # _model_server_result.job_id czXf14SOW9L1-JfjCYNBhA _model_server_result.datetime_utc '2024-12-21 17:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1FG3 # _exptl.entry_id 1FG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.26 _cell.angle_gamma 90 _cell.entry_id 1FG3 _cell.length_a 132.484 _cell.length_b 62.435 _cell.length_c 45.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 132.484 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C4A PLP . A PLP 500 1_555 C N HSA . A HSA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale2 B C4A PLP . A PLP 500 1_555 A NZ LYS 214 A LYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 A C GLY 111 A GLY 111 1_555 A N MSE 112 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 112 A MSE 112 1_555 A N TYR 113 A TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C LEU 236 A LEU 236 1_555 A N MSE 237 A MSE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 237 A MSE 237 1_555 A N LYS 238 A LYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C ALA 264 A ALA 264 1_555 A N MSE 265 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 265 A MSE 265 1_555 A N ARG 266 A ARG 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1FG3 _atom_sites.fract_transf_matrix[1][1] 0.007548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 500 500 PLP PLP . C 3 HSA A 1 501 501 HSA HSA . D 4 HOH A 1 357 357 HOH HOH . D 4 HOH A 2 358 358 HOH HOH . D 4 HOH A 3 359 359 HOH HOH . D 4 HOH A 4 360 360 HOH HOH . D 4 HOH A 5 361 361 HOH HOH . D 4 HOH A 6 362 362 HOH HOH . D 4 HOH A 7 364 364 HOH HOH . D 4 HOH A 8 365 365 HOH HOH . D 4 HOH A 9 366 366 HOH HOH . D 4 HOH A 10 367 367 HOH HOH . D 4 HOH A 11 368 368 HOH HOH . D 4 HOH A 12 369 369 HOH HOH . D 4 HOH A 13 370 370 HOH HOH . D 4 HOH A 14 371 371 HOH HOH . D 4 HOH A 15 372 372 HOH HOH . D 4 HOH A 16 373 373 HOH HOH . D 4 HOH A 17 374 374 HOH HOH . D 4 HOH A 18 375 375 HOH HOH . D 4 HOH A 19 376 376 HOH HOH . D 4 HOH A 20 377 377 HOH HOH . D 4 HOH A 21 378 378 HOH HOH . D 4 HOH A 22 379 379 HOH HOH . D 4 HOH A 23 380 380 HOH HOH . D 4 HOH A 24 381 381 HOH HOH . D 4 HOH A 25 382 382 HOH HOH . D 4 HOH A 26 383 383 HOH HOH . D 4 HOH A 27 384 384 HOH HOH . D 4 HOH A 28 385 385 HOH HOH . D 4 HOH A 29 386 386 HOH HOH . D 4 HOH A 30 387 387 HOH HOH . D 4 HOH A 31 388 388 HOH HOH . D 4 HOH A 32 389 389 HOH HOH . D 4 HOH A 33 390 390 HOH HOH . D 4 HOH A 34 391 391 HOH HOH . D 4 HOH A 35 392 392 HOH HOH . D 4 HOH A 36 393 393 HOH HOH . D 4 HOH A 37 394 394 HOH HOH . D 4 HOH A 38 395 395 HOH HOH . D 4 HOH A 39 396 396 HOH HOH . D 4 HOH A 40 397 397 HOH HOH . D 4 HOH A 41 398 398 HOH HOH . D 4 HOH A 42 399 399 HOH HOH . D 4 HOH A 43 400 400 HOH HOH . D 4 HOH A 44 401 401 HOH HOH . D 4 HOH A 45 402 402 HOH HOH . D 4 HOH A 46 403 403 HOH HOH . D 4 HOH A 47 404 404 HOH HOH . D 4 HOH A 48 405 405 HOH HOH . D 4 HOH A 49 406 406 HOH HOH . D 4 HOH A 50 407 407 HOH HOH . D 4 HOH A 51 408 408 HOH HOH . D 4 HOH A 52 409 409 HOH HOH . D 4 HOH A 53 410 410 HOH HOH . D 4 HOH A 54 411 411 HOH HOH . D 4 HOH A 55 412 412 HOH HOH . D 4 HOH A 56 413 413 HOH HOH . D 4 HOH A 57 414 414 HOH HOH . D 4 HOH A 58 415 415 HOH HOH . D 4 HOH A 59 416 416 HOH HOH . D 4 HOH A 60 417 417 HOH HOH . D 4 HOH A 61 418 418 HOH HOH . D 4 HOH A 62 419 419 HOH HOH . D 4 HOH A 63 420 420 HOH HOH . D 4 HOH A 64 421 421 HOH HOH . D 4 HOH A 65 422 422 HOH HOH . D 4 HOH A 66 423 423 HOH HOH . D 4 HOH A 67 424 424 HOH HOH . D 4 HOH A 68 425 425 HOH HOH . D 4 HOH A 69 426 426 HOH HOH . D 4 HOH A 70 427 427 HOH HOH . D 4 HOH A 71 428 428 HOH HOH . D 4 HOH A 72 429 429 HOH HOH . D 4 HOH A 73 430 430 HOH HOH . D 4 HOH A 74 431 431 HOH HOH . D 4 HOH A 75 432 432 HOH HOH . D 4 HOH A 76 433 433 HOH HOH . D 4 HOH A 77 434 434 HOH HOH . D 4 HOH A 78 435 435 HOH HOH . D 4 HOH A 79 436 436 HOH HOH . D 4 HOH A 80 437 437 HOH HOH . D 4 HOH A 81 438 438 HOH HOH . D 4 HOH A 82 439 439 HOH HOH . D 4 HOH A 83 440 440 HOH HOH . D 4 HOH A 84 441 441 HOH HOH . D 4 HOH A 85 442 442 HOH HOH . D 4 HOH A 86 443 443 HOH HOH . D 4 HOH A 87 444 444 HOH HOH . D 4 HOH A 88 445 445 HOH HOH . D 4 HOH A 89 446 446 HOH HOH . D 4 HOH A 90 447 447 HOH HOH . D 4 HOH A 91 448 448 HOH HOH . D 4 HOH A 92 449 449 HOH HOH . D 4 HOH A 93 450 450 HOH HOH . D 4 HOH A 94 451 451 HOH HOH . D 4 HOH A 95 452 452 HOH HOH . D 4 HOH A 96 453 453 HOH HOH . D 4 HOH A 97 454 454 HOH HOH . D 4 HOH A 98 455 455 HOH HOH . D 4 HOH A 99 456 456 HOH HOH . D 4 HOH A 100 457 457 HOH HOH . D 4 HOH A 101 458 458 HOH HOH . D 4 HOH A 102 459 459 HOH HOH . D 4 HOH A 103 460 460 HOH HOH . D 4 HOH A 104 461 461 HOH HOH . D 4 HOH A 105 462 462 HOH HOH . D 4 HOH A 106 463 463 HOH HOH . D 4 HOH A 107 464 464 HOH HOH . D 4 HOH A 108 465 465 HOH HOH . D 4 HOH A 109 466 466 HOH HOH . D 4 HOH A 110 467 467 HOH HOH . D 4 HOH A 111 468 468 HOH HOH . D 4 HOH A 112 469 469 HOH HOH . D 4 HOH A 113 470 470 HOH HOH . D 4 HOH A 114 471 471 HOH HOH . D 4 HOH A 115 472 472 HOH HOH . D 4 HOH A 116 473 473 HOH HOH . D 4 HOH A 117 474 474 HOH HOH . D 4 HOH A 118 475 475 HOH HOH . D 4 HOH A 119 476 476 HOH HOH . D 4 HOH A 120 477 477 HOH HOH . D 4 HOH A 121 478 478 HOH HOH . D 4 HOH A 122 479 479 HOH HOH . D 4 HOH A 123 480 480 HOH HOH . D 4 HOH A 124 481 481 HOH HOH . D 4 HOH A 125 482 482 HOH HOH . D 4 HOH A 126 483 483 HOH HOH . D 4 HOH A 127 484 484 HOH HOH . D 4 HOH A 128 485 485 HOH HOH . D 4 HOH A 129 486 486 HOH HOH . D 4 HOH A 130 487 487 HOH HOH . D 4 HOH A 131 488 488 HOH HOH . D 4 HOH A 132 489 489 HOH HOH . D 4 HOH A 133 490 490 HOH HOH . D 4 HOH A 134 491 491 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 50.652 49.005 -2.148 1 19.63 ? N1 PLP 500 A 1 HETATM 2 C C2 PLP . . . B 2 49.753 49.413 -3.175 1 20.02 ? C2 PLP 500 A 1 HETATM 3 C C2A PLP . . . B 2 48.408 48.741 -3.235 1 19.76 ? C2A PLP 500 A 1 HETATM 4 C C3 PLP . . . B 2 50.111 50.433 -4.12 1 19.7 ? C3 PLP 500 A 1 HETATM 5 O O3 PLP . . . B 2 49.241 50.815 -5.092 1 18.74 ? O3 PLP 500 A 1 HETATM 6 C C4 PLP . . . B 2 51.432 51.043 -4.001 1 20.61 ? C4 PLP 500 A 1 HETATM 7 C C4A PLP . . . B 2 51.888 52.173 -4.998 1 22.64 ? C4A PLP 500 A 1 HETATM 8 C C5 PLP . . . B 2 52.385 50.544 -2.851 1 19.84 ? C5 PLP 500 A 1 HETATM 9 C C6 PLP . . . B 2 51.927 49.533 -1.97 1 20.15 ? C6 PLP 500 A 1 HETATM 10 C C5A PLP . . . B 2 53.795 51.093 -2.628 1 17.4 ? C5A PLP 500 A 1 HETATM 11 O O4P PLP . . . B 2 53.745 52.263 -2.291 1 17.14 ? O4P PLP 500 A 1 HETATM 12 P P PLP . . . B 2 55.279 52.939 -2.031 1 12.31 ? P PLP 500 A 1 HETATM 13 O O1P PLP . . . B 2 56.523 51.771 -2.204 1 14.83 ? O1P PLP 500 A 1 HETATM 14 O O2P PLP . . . B 2 55.326 53.572 -0.464 1 13.5 ? O2P PLP 500 A 1 HETATM 15 O O3P PLP . . . B 2 55.542 54.191 -3.152 1 14.16 ? O3P PLP 500 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #