data_1FG7 # _model_server_result.job_id Soqo-w9_oi5rCL4cVBrawg _model_server_result.datetime_utc '2025-03-05 01:54:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":357}' # _entry.id 1FG7 # _exptl.entry_id 1FG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.14 _cell.angle_gamma 90 _cell.entry_id 1FG7 _cell.length_a 132.168 _cell.length_b 62.575 _cell.length_c 45.284 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 132.168 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 111 A GLY 111 1_555 A N MSE 112 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 112 A MSE 112 1_555 A N TYR 113 A TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 236 A LEU 236 1_555 A N MSE 237 A MSE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 237 A MSE 237 1_555 A N LYS 238 A LYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ALA 264 A ALA 264 1_555 A N MSE 265 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 265 A MSE 265 1_555 A N ARG 266 A ARG 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C8 H13 N2 O5 P' _chem_comp.formula_weight 248.173 _chem_comp.id PMP _chem_comp.mon_nstd_flag . _chem_comp.name "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "PYRIDOXAMINE-5'-PHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PMP doub 279 n y N1 C6 PMP sing 280 n y C2 C2A PMP sing 281 n n C2 C3 PMP sing 282 n y C2A H2A1 PMP sing 283 n n C2A H2A2 PMP sing 284 n n C2A H2A3 PMP sing 285 n n C3 O3 PMP sing 286 n n C3 C4 PMP doub 287 n y O3 HO3 PMP sing 288 n n C4 C4A PMP sing 289 n n C4 C5 PMP sing 290 n y C4A N4A PMP sing 291 n n C4A H4A1 PMP sing 292 n n C4A H4A2 PMP sing 293 n n N4A HNA1 PMP sing 294 n n N4A HNA2 PMP sing 295 n n C5 C6 PMP doub 296 n y C5 C5A PMP sing 297 n n C6 H6 PMP sing 298 n n C5A O4P PMP sing 299 n n C5A H5A1 PMP sing 300 n n C5A H5A2 PMP sing 301 n n O4P P PMP sing 302 n n P O1P PMP doub 303 n n P O2P PMP sing 304 n n P O3P PMP sing 305 n n O2P HOP2 PMP sing 306 n n O3P HOP3 PMP sing 307 n n # _atom_sites.entry_id 1FG7 _atom_sites.fract_transf_matrix[1][1] 0.007566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001906 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMP A 1 357 357 PMP PMP . C 3 HOH A 1 358 358 HOH HOH . C 3 HOH A 2 359 359 HOH HOH . C 3 HOH A 3 360 360 HOH HOH . C 3 HOH A 4 361 361 HOH HOH . C 3 HOH A 5 362 362 HOH HOH . C 3 HOH A 6 363 363 HOH HOH . C 3 HOH A 7 364 364 HOH HOH . C 3 HOH A 8 365 365 HOH HOH . C 3 HOH A 9 366 366 HOH HOH . C 3 HOH A 10 367 367 HOH HOH . C 3 HOH A 11 368 368 HOH HOH . C 3 HOH A 12 369 369 HOH HOH . C 3 HOH A 13 370 370 HOH HOH . C 3 HOH A 14 371 371 HOH HOH . C 3 HOH A 15 372 372 HOH HOH . C 3 HOH A 16 373 373 HOH HOH . C 3 HOH A 17 374 374 HOH HOH . C 3 HOH A 18 375 375 HOH HOH . C 3 HOH A 19 376 376 HOH HOH . C 3 HOH A 20 377 377 HOH HOH . C 3 HOH A 21 378 378 HOH HOH . C 3 HOH A 22 379 379 HOH HOH . C 3 HOH A 23 380 380 HOH HOH . C 3 HOH A 24 381 381 HOH HOH . C 3 HOH A 25 382 382 HOH HOH . C 3 HOH A 26 383 383 HOH HOH . C 3 HOH A 27 384 384 HOH HOH . C 3 HOH A 28 385 385 HOH HOH . C 3 HOH A 29 386 386 HOH HOH . C 3 HOH A 30 387 387 HOH HOH . C 3 HOH A 31 388 388 HOH HOH . C 3 HOH A 32 389 389 HOH HOH . C 3 HOH A 33 390 390 HOH HOH . C 3 HOH A 34 391 391 HOH HOH . C 3 HOH A 35 392 392 HOH HOH . C 3 HOH A 36 393 393 HOH HOH . C 3 HOH A 37 394 394 HOH HOH . C 3 HOH A 38 395 395 HOH HOH . C 3 HOH A 39 396 396 HOH HOH . C 3 HOH A 40 397 397 HOH HOH . C 3 HOH A 41 398 398 HOH HOH . C 3 HOH A 42 399 399 HOH HOH . C 3 HOH A 43 400 400 HOH HOH . C 3 HOH A 44 401 401 HOH HOH . C 3 HOH A 45 402 402 HOH HOH . C 3 HOH A 46 403 403 HOH HOH . C 3 HOH A 47 404 404 HOH HOH . C 3 HOH A 48 405 405 HOH HOH . C 3 HOH A 49 406 406 HOH HOH . C 3 HOH A 50 407 407 HOH HOH . C 3 HOH A 51 408 408 HOH HOH . C 3 HOH A 52 409 409 HOH HOH . C 3 HOH A 53 410 410 HOH HOH . C 3 HOH A 54 411 411 HOH HOH . C 3 HOH A 55 412 412 HOH HOH . C 3 HOH A 56 413 413 HOH HOH . C 3 HOH A 57 414 414 HOH HOH . C 3 HOH A 58 415 415 HOH HOH . C 3 HOH A 59 416 416 HOH HOH . C 3 HOH A 60 417 417 HOH HOH . C 3 HOH A 61 418 418 HOH HOH . C 3 HOH A 62 419 419 HOH HOH . C 3 HOH A 63 420 420 HOH HOH . C 3 HOH A 64 421 421 HOH HOH . C 3 HOH A 65 422 422 HOH HOH . C 3 HOH A 66 423 423 HOH HOH . C 3 HOH A 67 424 424 HOH HOH . C 3 HOH A 68 425 425 HOH HOH . C 3 HOH A 69 426 426 HOH HOH . C 3 HOH A 70 427 427 HOH HOH . C 3 HOH A 71 428 428 HOH HOH . C 3 HOH A 72 429 429 HOH HOH . C 3 HOH A 73 430 430 HOH HOH . C 3 HOH A 74 431 431 HOH HOH . C 3 HOH A 75 432 432 HOH HOH . C 3 HOH A 76 433 433 HOH HOH . C 3 HOH A 77 434 434 HOH HOH . C 3 HOH A 78 435 435 HOH HOH . C 3 HOH A 79 436 436 HOH HOH . C 3 HOH A 80 437 437 HOH HOH . C 3 HOH A 81 438 438 HOH HOH . C 3 HOH A 82 439 439 HOH HOH . C 3 HOH A 83 440 440 HOH HOH . C 3 HOH A 84 441 441 HOH HOH . C 3 HOH A 85 442 442 HOH HOH . C 3 HOH A 86 443 443 HOH HOH . C 3 HOH A 87 444 444 HOH HOH . C 3 HOH A 88 445 445 HOH HOH . C 3 HOH A 89 446 446 HOH HOH . C 3 HOH A 90 447 447 HOH HOH . C 3 HOH A 91 448 448 HOH HOH . C 3 HOH A 92 449 449 HOH HOH . C 3 HOH A 93 450 450 HOH HOH . C 3 HOH A 94 451 451 HOH HOH . C 3 HOH A 95 452 452 HOH HOH . C 3 HOH A 96 453 453 HOH HOH . C 3 HOH A 97 454 454 HOH HOH . C 3 HOH A 98 455 455 HOH HOH . C 3 HOH A 99 456 456 HOH HOH . C 3 HOH A 100 457 457 HOH HOH . C 3 HOH A 101 458 458 HOH HOH . C 3 HOH A 102 459 459 HOH HOH . C 3 HOH A 103 460 460 HOH HOH . C 3 HOH A 104 461 461 HOH HOH . C 3 HOH A 105 462 462 HOH HOH . C 3 HOH A 106 463 463 HOH HOH . C 3 HOH A 107 464 464 HOH HOH . C 3 HOH A 108 465 465 HOH HOH . C 3 HOH A 109 466 466 HOH HOH . C 3 HOH A 110 467 467 HOH HOH . C 3 HOH A 111 468 468 HOH HOH . C 3 HOH A 112 469 469 HOH HOH . C 3 HOH A 113 470 470 HOH HOH . C 3 HOH A 114 471 471 HOH HOH . C 3 HOH A 115 472 472 HOH HOH . C 3 HOH A 116 473 473 HOH HOH . C 3 HOH A 117 474 474 HOH HOH . C 3 HOH A 118 475 475 HOH HOH . C 3 HOH A 119 476 476 HOH HOH . C 3 HOH A 120 477 477 HOH HOH . C 3 HOH A 121 478 478 HOH HOH . C 3 HOH A 122 479 479 HOH HOH . C 3 HOH A 123 480 480 HOH HOH . C 3 HOH A 124 481 481 HOH HOH . C 3 HOH A 125 482 482 HOH HOH . C 3 HOH A 126 483 483 HOH HOH . C 3 HOH A 127 484 484 HOH HOH . C 3 HOH A 128 485 485 HOH HOH . C 3 HOH A 129 486 486 HOH HOH . C 3 HOH A 130 487 487 HOH HOH . C 3 HOH A 131 488 488 HOH HOH . C 3 HOH A 132 489 489 HOH HOH . C 3 HOH A 133 490 490 HOH HOH . C 3 HOH A 134 491 491 HOH HOH . C 3 HOH A 135 492 492 HOH HOH . C 3 HOH A 136 493 493 HOH HOH . C 3 HOH A 137 494 494 HOH HOH . C 3 HOH A 138 495 495 HOH HOH . C 3 HOH A 139 496 496 HOH HOH . C 3 HOH A 140 497 497 HOH HOH . C 3 HOH A 141 498 498 HOH HOH . C 3 HOH A 142 499 499 HOH HOH . C 3 HOH A 143 500 500 HOH HOH . C 3 HOH A 144 501 501 HOH HOH . C 3 HOH A 145 502 502 HOH HOH . C 3 HOH A 146 503 503 HOH HOH . C 3 HOH A 147 504 504 HOH HOH . C 3 HOH A 148 505 505 HOH HOH . C 3 HOH A 149 506 506 HOH HOH . C 3 HOH A 150 507 507 HOH HOH . C 3 HOH A 151 508 508 HOH HOH . C 3 HOH A 152 509 509 HOH HOH . C 3 HOH A 153 510 510 HOH HOH . C 3 HOH A 154 511 511 HOH HOH . C 3 HOH A 155 512 512 HOH HOH . C 3 HOH A 156 513 513 HOH HOH . C 3 HOH A 157 514 514 HOH HOH . C 3 HOH A 158 515 515 HOH HOH . C 3 HOH A 159 516 516 HOH HOH . C 3 HOH A 160 517 517 HOH HOH . C 3 HOH A 161 518 518 HOH HOH . C 3 HOH A 162 519 519 HOH HOH . C 3 HOH A 163 520 520 HOH HOH . C 3 HOH A 164 521 521 HOH HOH . C 3 HOH A 165 522 522 HOH HOH . C 3 HOH A 166 523 523 HOH HOH . C 3 HOH A 167 524 524 HOH HOH . C 3 HOH A 168 525 525 HOH HOH . C 3 HOH A 169 526 526 HOH HOH . C 3 HOH A 170 527 527 HOH HOH . C 3 HOH A 171 528 528 HOH HOH . C 3 HOH A 172 529 529 HOH HOH . C 3 HOH A 173 530 530 HOH HOH . C 3 HOH A 174 531 531 HOH HOH . C 3 HOH A 175 532 532 HOH HOH . C 3 HOH A 176 533 533 HOH HOH . C 3 HOH A 177 534 534 HOH HOH . C 3 HOH A 178 535 535 HOH HOH . C 3 HOH A 179 536 536 HOH HOH . C 3 HOH A 180 537 537 HOH HOH . C 3 HOH A 181 538 538 HOH HOH . C 3 HOH A 182 539 539 HOH HOH . C 3 HOH A 183 540 540 HOH HOH . C 3 HOH A 184 541 541 HOH HOH . C 3 HOH A 185 542 542 HOH HOH . C 3 HOH A 186 543 543 HOH HOH . C 3 HOH A 187 544 544 HOH HOH . C 3 HOH A 188 545 545 HOH HOH . C 3 HOH A 189 546 546 HOH HOH . C 3 HOH A 190 547 547 HOH HOH . C 3 HOH A 191 548 548 HOH HOH . C 3 HOH A 192 549 549 HOH HOH . C 3 HOH A 193 550 550 HOH HOH . C 3 HOH A 194 551 551 HOH HOH . C 3 HOH A 195 552 552 HOH HOH . C 3 HOH A 196 553 553 HOH HOH . C 3 HOH A 197 554 554 HOH HOH . C 3 HOH A 198 555 555 HOH HOH . C 3 HOH A 199 556 556 HOH HOH . C 3 HOH A 200 557 557 HOH HOH . C 3 HOH A 201 558 558 HOH HOH . C 3 HOH A 202 559 559 HOH HOH . C 3 HOH A 203 560 560 HOH HOH . C 3 HOH A 204 561 561 HOH HOH . C 3 HOH A 205 562 562 HOH HOH . C 3 HOH A 206 563 563 HOH HOH . C 3 HOH A 207 564 564 HOH HOH . C 3 HOH A 208 565 565 HOH HOH . C 3 HOH A 209 566 566 HOH HOH . C 3 HOH A 210 567 567 HOH HOH . C 3 HOH A 211 568 568 HOH HOH . C 3 HOH A 212 569 569 HOH HOH . C 3 HOH A 213 570 570 HOH HOH . C 3 HOH A 214 571 571 HOH HOH . C 3 HOH A 215 572 572 HOH HOH . C 3 HOH A 216 573 573 HOH HOH . C 3 HOH A 217 574 574 HOH HOH . C 3 HOH A 218 575 575 HOH HOH . C 3 HOH A 219 576 576 HOH HOH . C 3 HOH A 220 577 577 HOH HOH . C 3 HOH A 221 578 578 HOH HOH . C 3 HOH A 222 579 579 HOH HOH . C 3 HOH A 223 580 580 HOH HOH . C 3 HOH A 224 581 581 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PMP . . . B 2 50.5 48.934 -2.048 1 9.38 ? N1 PMP 357 A 1 HETATM 2 C C2 PMP . . . B 2 49.686 49.317 -3.13 1 9.17 ? C2 PMP 357 A 1 HETATM 3 C C2A PMP . . . B 2 48.306 48.681 -3.228 1 8.9 ? C2A PMP 357 A 1 HETATM 4 C C3 PMP . . . B 2 50.119 50.255 -4.064 1 10 ? C3 PMP 357 A 1 HETATM 5 O O3 PMP . . . B 2 49.284 50.614 -5.112 1 9.78 ? O3 PMP 357 A 1 HETATM 6 C C4 PMP . . . B 2 51.405 50.832 -3.91 1 10.82 ? C4 PMP 357 A 1 HETATM 7 C C4A PMP . . . B 2 51.869 51.878 -4.938 1 12.2 ? C4A PMP 357 A 1 HETATM 8 N N4A PMP . . . B 2 51.294 51.697 -6.275 1 15.27 ? N4A PMP 357 A 1 HETATM 9 C C5 PMP . . . B 2 52.248 50.388 -2.727 1 10.89 ? C5 PMP 357 A 1 HETATM 10 C C6 PMP . . . B 2 51.75 49.44 -1.831 1 10.2 ? C6 PMP 357 A 1 HETATM 11 C C5A PMP . . . B 2 53.638 50.974 -2.52 1 11.32 ? C5A PMP 357 A 1 HETATM 12 O O4P PMP . . . B 2 53.531 51.971 -2.062 1 11.3 ? O4P PMP 357 A 1 HETATM 13 P P PMP . . . B 2 55.023 52.705 -2.002 1 10.95 ? P PMP 357 A 1 HETATM 14 O O1P PMP . . . B 2 56.64 51.691 -2.05 1 11.43 ? O1P PMP 357 A 1 HETATM 15 O O2P PMP . . . B 2 54.98 53.4 -0.202 1 12.14 ? O2P PMP 357 A 1 HETATM 16 O O3P PMP . . . B 2 55.173 54.09 -3.176 1 11.45 ? O3P PMP 357 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #