data_1FGC # _model_server_result.job_id 5t3EWe8CFLakYy0QKpd-PQ _model_server_result.datetime_utc '2024-11-27 23:06:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1FGC # _exptl.entry_id 1FGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'SEQUENCE ANALOGOUS TO THE p2-NC PROCESSING SITE IN HIV-1' _entity.formula_weight 770.983 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FGC _cell.length_a 50.719 _cell.length_b 57.452 _cell.length_c 61.057 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FGC _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H68 N11 O8 1' _chem_comp.formula_weight 770.983 _chem_comp.id 2NC _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms p2/NC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 2NC doub 1 n n C CH3 2NC sing 2 n n CH3 H1 2NC sing 3 n n CH3 H2 2NC sing 4 n n CH3 H3 2NC sing 5 n n N CA 2NC sing 6 n n N H 2NC sing 7 n n CA C1 2NC sing 8 n n CA CB 2NC sing 9 n n CA HA 2NC sing 10 n n C1 O1 2NC doub 11 n n CB OG1 2NC sing 12 n n CB CG2 2NC sing 13 n n CB HB 2NC sing 14 n n OG1 HG1 2NC sing 15 n n CG2 HG21 2NC sing 16 n n CG2 HG22 2NC sing 17 n n CG2 HG23 2NC sing 18 n n N1 CA1 2NC sing 19 n n N1 H4 2NC sing 20 n n CA1 C2 2NC sing 21 n n CA1 CB1 2NC sing 22 n n CA1 HA1 2NC sing 23 n n C2 O2 2NC doub 24 n n CB1 CG1 2NC sing 25 n n CB1 CG21 2NC sing 26 n n CB1 HB1 2NC sing 27 n n CG1 CD1 2NC sing 28 n n CG1 HG12 2NC sing 29 n n CG1 HG13 2NC sing 30 n n CG21 HG24 2NC sing 31 n n CG21 HG25 2NC sing 32 n n CG21 HG26 2NC sing 33 n n CD1 HD11 2NC sing 34 n n CD1 HD12 2NC sing 35 n n CD1 HD13 2NC sing 36 n n N2 CA2 2NC sing 37 n n N2 H5 2NC sing 38 n n CA2 C3 2NC sing 39 n n CA2 CB2 2NC sing 40 n n CA2 HA2 2NC sing 41 n n CB2 CG 2NC sing 42 n n CB2 HB2 2NC sing 43 n n CB2 HB3 2NC sing 44 n n CG CD 2NC sing 45 n n CG HG2 2NC sing 46 n n CG HG3 2NC sing 47 n n CD CE 2NC sing 48 n n CD HD2 2NC sing 49 n n CD HD3 2NC sing 50 n n CE HE1 2NC sing 51 n n CE HE2 2NC sing 52 n n CE HE3 2NC sing 53 n n N3 CA3 2NC sing 54 n n N3 H6 2NC sing 55 n n CA3 C4 2NC sing 56 n n CA3 CB3 2NC sing 57 n n CA3 HA3 2NC sing 58 n n C4 O3 2NC doub 59 n n CB3 CG3 2NC sing 60 n n CB3 HB21 2NC sing 61 n n CB3 HB31 2NC sing 62 n n CG3 CD2 2NC sing 63 n n CG3 HG27 2NC sing 64 n n CG3 HG31 2NC sing 65 n n CD2 CE1 2NC sing 66 n n CD2 HD21 2NC sing 67 n n CD2 HD31 2NC sing 68 n n CE1 HE11 2NC sing 69 n n CE1 HE21 2NC sing 70 n n CE1 HE31 2NC sing 71 n n N4 CA4 2NC sing 72 n n N4 H7 2NC sing 73 n n CA4 C5 2NC sing 74 n n CA4 CB4 2NC sing 75 n n CA4 HA4 2NC sing 76 n n C5 O4 2NC doub 77 n n CB4 CG4 2NC sing 78 n n CB4 HB22 2NC sing 79 n n CB4 HB32 2NC sing 80 n n CG4 CD3 2NC sing 81 n n CG4 HG28 2NC sing 82 n n CG4 HG32 2NC sing 83 n n CD3 OE1 2NC doub 84 n n CD3 NE2 2NC sing 85 n n NE2 HE22 2NC sing 86 n n NE2 HE23 2NC sing 87 n n N5 CA5 2NC sing 88 n n N5 H8 2NC sing 89 n n CA5 C6 2NC sing 90 n n CA5 CB5 2NC sing 91 n n CA5 HA5 2NC sing 92 n n C6 O5 2NC doub 93 n n CB5 CG5 2NC sing 94 n n CB5 HB23 2NC sing 95 n n CB5 HB33 2NC sing 96 n n CG5 CD4 2NC sing 97 n n CG5 HG29 2NC sing 98 n n CG5 HG33 2NC sing 99 n n CD4 NE 2NC sing 100 n n CD4 HD22 2NC sing 101 n n CD4 HD32 2NC sing 102 n n NE CZ 2NC sing 103 n n NE HE 2NC sing 104 n n CZ NH1 2NC sing 105 n n CZ NH2 2NC doub 106 n n NH1 HH11 2NC sing 107 n n NH1 HH12 2NC sing 108 n n NH2 HH21 2NC sing 109 n n NH2 HH22 2NC sing 110 n n N6 HN1 2NC sing 111 n n N6 HN2 2NC sing 112 n n C N 2NC sing 113 n n C1 N1 2NC sing 114 n n C2 N2 2NC sing 115 n n C3 N3 2NC sing 116 n n C4 N4 2NC sing 117 n n C5 N5 2NC sing 118 n n C3 HC31 2NC sing 119 n n C3 HC32 2NC sing 120 n n C6 N6 2NC sing 121 n n # _atom_sites.entry_id 1FGC _atom_sites.fract_transf_matrix[1][1] 0.019716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2NC C 1 300 300 2NC ACE . D 3 HOH C 1 100 3 HOH HOH . D 3 HOH C 2 101 5 HOH HOH . D 3 HOH C 3 102 7 HOH HOH . D 3 HOH C 4 103 9 HOH HOH . D 3 HOH C 5 104 10 HOH HOH . D 3 HOH C 6 105 11 HOH HOH . D 3 HOH C 7 106 12 HOH HOH . D 3 HOH C 8 107 15 HOH HOH . D 3 HOH C 9 108 25 HOH HOH . D 3 HOH C 10 109 36 HOH HOH . D 3 HOH C 11 110 40 HOH HOH . D 3 HOH C 12 111 43 HOH HOH . D 3 HOH C 13 112 44 HOH HOH . D 3 HOH C 14 113 46 HOH HOH . D 3 HOH C 15 114 48 HOH HOH . D 3 HOH C 16 115 53 HOH HOH . D 3 HOH C 17 116 55 HOH HOH . D 3 HOH C 18 117 57 HOH HOH . D 3 HOH C 19 118 58 HOH HOH . D 3 HOH C 20 119 59 HOH HOH . D 3 HOH C 21 120 67 HOH HOH . D 3 HOH C 22 121 73 HOH HOH . D 3 HOH C 23 122 75 HOH HOH . D 3 HOH C 24 123 84 HOH HOH . D 3 HOH C 25 124 85 HOH HOH . D 3 HOH C 26 125 86 HOH HOH . D 3 HOH C 27 126 90 HOH HOH . D 3 HOH C 28 127 93 HOH HOH . D 3 HOH C 29 128 94 HOH HOH . D 3 HOH C 30 129 100 HOH HOH . D 3 HOH C 31 130 128 HOH HOH . D 3 HOH C 32 131 142 HOH HOH . D 3 HOH C 33 132 143 HOH HOH . D 3 HOH C 34 133 144 HOH HOH . D 3 HOH C 35 134 159 HOH HOH . D 3 HOH C 36 135 161 HOH HOH . D 3 HOH C 37 136 182 HOH HOH . D 3 HOH C 38 137 184 HOH HOH . D 3 HOH C 39 138 190 HOH HOH . D 3 HOH C 40 139 6 HOH HOH . D 3 HOH C 41 140 29 HOH HOH . D 3 HOH C 42 141 49 HOH HOH . D 3 HOH C 43 142 65 HOH HOH . E 3 HOH D 1 200 1 HOH HOH . E 3 HOH D 2 201 2 HOH HOH . E 3 HOH D 3 202 4 HOH HOH . E 3 HOH D 4 203 8 HOH HOH . E 3 HOH D 5 204 13 HOH HOH . E 3 HOH D 6 205 14 HOH HOH . E 3 HOH D 7 206 16 HOH HOH . E 3 HOH D 8 207 17 HOH HOH . E 3 HOH D 9 208 18 HOH HOH . E 3 HOH D 10 209 19 HOH HOH . E 3 HOH D 11 210 21 HOH HOH . E 3 HOH D 12 211 22 HOH HOH . E 3 HOH D 13 212 23 HOH HOH . E 3 HOH D 14 213 24 HOH HOH . E 3 HOH D 15 214 27 HOH HOH . E 3 HOH D 16 215 28 HOH HOH . E 3 HOH D 17 216 34 HOH HOH . E 3 HOH D 18 217 39 HOH HOH . E 3 HOH D 19 218 41 HOH HOH . E 3 HOH D 20 219 45 HOH HOH . E 3 HOH D 21 220 51 HOH HOH . E 3 HOH D 22 221 56 HOH HOH . E 3 HOH D 23 222 62 HOH HOH . E 3 HOH D 24 223 66 HOH HOH . E 3 HOH D 25 224 68 HOH HOH . E 3 HOH D 26 225 69 HOH HOH . E 3 HOH D 27 226 74 HOH HOH . E 3 HOH D 28 227 80 HOH HOH . E 3 HOH D 29 228 81 HOH HOH . E 3 HOH D 30 229 87 HOH HOH . E 3 HOH D 31 230 89 HOH HOH . E 3 HOH D 32 231 91 HOH HOH . E 3 HOH D 33 232 92 HOH HOH . E 3 HOH D 34 233 95 HOH HOH . E 3 HOH D 35 234 99 HOH HOH . E 3 HOH D 36 235 104 HOH HOH . E 3 HOH D 37 236 109 HOH HOH . E 3 HOH D 38 237 112 HOH HOH . E 3 HOH D 39 238 113 HOH HOH . E 3 HOH D 40 239 115 HOH HOH . E 3 HOH D 41 240 118 HOH HOH . E 3 HOH D 42 241 119 HOH HOH . E 3 HOH D 43 242 122 HOH HOH . E 3 HOH D 44 243 127 HOH HOH . E 3 HOH D 45 244 130 HOH HOH . E 3 HOH D 46 245 137 HOH HOH . E 3 HOH D 47 246 138 HOH HOH . E 3 HOH D 48 247 140 HOH HOH . E 3 HOH D 49 248 145 HOH HOH . E 3 HOH D 50 249 146 HOH HOH . E 3 HOH D 51 250 157 HOH HOH . E 3 HOH D 52 251 164 HOH HOH . E 3 HOH D 53 252 173 HOH HOH . E 3 HOH D 54 253 174 HOH HOH . E 3 HOH D 55 254 177 HOH HOH . E 3 HOH D 56 255 187 HOH HOH . E 3 HOH D 57 256 191 HOH HOH . E 3 HOH D 58 257 192 HOH HOH . E 3 HOH D 59 258 193 HOH HOH . E 3 HOH D 60 259 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2NC . . . C 2 21.06 37.406 16.406 1 13.84 ? C 2NC 300 C 1 HETATM 2 O O 2NC . . . C 2 22.01 37.035 17.093 1 15.12 ? O 2NC 300 C 1 HETATM 3 C CH3 2NC . . . C 2 21.281 38.059 15.044 1 13.42 ? CH3 2NC 300 C 1 HETATM 4 N N 2NC . . . C 2 19.788 37.259 16.775 1 12.61 ? N 2NC 300 C 1 HETATM 5 C CA 2NC . . . C 2 19.402 36.666 18.055 1 10.49 ? CA 2NC 300 C 1 HETATM 6 C C1 2NC . . . C 2 18.815 35.259 17.949 1 9.25 ? C1 2NC 300 C 1 HETATM 7 O O1 2NC . . . C 2 18.605 34.595 18.966 1 7.68 ? O1 2NC 300 C 1 HETATM 8 C CB 2NC . . . C 2 18.356 37.53 18.763 1 11.83 ? CB 2NC 300 C 1 HETATM 9 O OG1 2NC . . . C 2 17.185 37.624 17.941 1 11.57 ? OG1 2NC 300 C 1 HETATM 10 C CG2 2NC . . . C 2 18.911 38.924 19.039 1 12.53 ? CG2 2NC 300 C 1 HETATM 11 N N1 2NC . . . C 2 18.495 34.838 16.73 1 8.29 ? N1 2NC 300 C 1 HETATM 12 C CA1 2NC . . . C 2 17.921 33.507 16.488 1 8.53 ? CA1 2NC 300 C 1 HETATM 13 C C2 2NC . . . C 2 18.994 32.661 15.784 1 8.59 ? C2 2NC 300 C 1 HETATM 14 O O2 2NC . . . C 2 18.957 32.45 14.568 1 8.51 ? O2 2NC 300 C 1 HETATM 15 C CB1 2NC . . . C 2 16.617 33.615 15.632 1 7.43 ? CB1 2NC 300 C 1 HETATM 16 C CG1 2NC . . . C 2 15.655 34.639 16.261 1 4.16 ? CG1 2NC 300 C 1 HETATM 17 C CG21 2NC . . . C 2 15.939 32.255 15.512 1 7.66 ? CG21 2NC 300 C 1 HETATM 18 C CD1 2NC . . . C 2 15.159 34.272 17.658 1 3.33 ? CD1 2NC 300 C 1 HETATM 19 N N2 2NC . . . C 2 19.937 32.151 16.571 1 9.07 ? N2 2NC 300 C 1 HETATM 20 C CA2 2NC . . . C 2 21.049 31.399 16.011 1 8.67 ? CA2 2NC 300 C 1 HETATM 21 C C3 2NC . . . C 2 20.88 29.95 15.606 1 9.98 ? C3 2NC 300 C 1 HETATM 22 C CB2 2NC . . . C 2 22.313 31.596 16.846 1 8.74 ? CB2 2NC 300 C 1 HETATM 23 C CG 2NC . . . C 2 22.73 33.063 16.997 1 6.47 ? CG 2NC 300 C 1 HETATM 24 C CD 2NC . . . C 2 22.701 33.822 15.672 1 6.47 ? CD 2NC 300 C 1 HETATM 25 C CE 2NC . . . C 2 23.686 33.27 14.651 1 5.7 ? CE 2NC 300 C 1 HETATM 26 N N3 2NC . . . C 2 19.756 29.68 14.954 1 11.35 ? N3 2NC 300 C 1 HETATM 27 C CA3 2NC . . . C 2 19.497 28.368 14.396 1 10.85 ? CA3 2NC 300 C 1 HETATM 28 C C4 2NC . . . C 2 20.507 28.332 13.247 1 10.77 ? C4 2NC 300 C 1 HETATM 29 O O3 2NC . . . C 2 20.788 29.366 12.631 1 11.66 ? O3 2NC 300 C 1 HETATM 30 C CB3 2NC . . . C 2 18.069 28.308 13.834 1 10.74 ? CB3 2NC 300 C 1 HETATM 31 C CG3 2NC . . . C 2 17.781 27.125 12.926 1 11.46 ? CG3 2NC 300 C 1 HETATM 32 C CD2 2NC . . . C 2 17.717 27.527 11.462 1 13.01 ? CD2 2NC 300 C 1 HETATM 33 C CE1 2NC . . . C 2 16.555 28.446 11.201 1 12.08 ? CE1 2NC 300 C 1 HETATM 34 N N4 2NC . . . C 2 21.087 27.169 12.992 1 9.62 ? N4 2NC 300 C 1 HETATM 35 C CA4 2NC . . . C 2 22.047 27.031 11.907 1 9.56 ? CA4 2NC 300 C 1 HETATM 36 C C5 2NC . . . C 2 21.939 25.64 11.284 1 9.81 ? C5 2NC 300 C 1 HETATM 37 O O4 2NC . . . C 2 21.782 24.637 11.981 1 9.88 ? O4 2NC 300 C 1 HETATM 38 C CB4 2NC . . . C 2 23.473 27.335 12.4 1 8.16 ? CB4 2NC 300 C 1 HETATM 39 C CG4 2NC . . . C 2 24.561 27.238 11.334 1 6.97 ? CG4 2NC 300 C 1 HETATM 40 C CD3 2NC . . . C 2 25.08 25.82 11.136 1 7.92 ? CD3 2NC 300 C 1 HETATM 41 O OE1 2NC . . . C 2 24.959 24.979 12.023 1 7.85 ? OE1 2NC 300 C 1 HETATM 42 N NE2 2NC . . . C 2 25.666 25.554 9.971 1 7.43 ? NE2 2NC 300 C 1 HETATM 43 N N5 2NC . . . C 2 22.015 25.604 9.96 1 11.3 ? N5 2NC 300 C 1 HETATM 44 C CA5 2NC . . . C 2 21.917 24.368 9.207 1 13.82 ? CA5 2NC 300 C 1 HETATM 45 C C6 2NC . . . C 2 23.119 24.266 8.27 1 13.8 ? C6 2NC 300 C 1 HETATM 46 O O5 2NC . . . C 2 23.375 25.24 7.533 1 13.22 ? O5 2NC 300 C 1 HETATM 47 C CB5 2NC . . . C 2 20.607 24.369 8.409 1 17.07 ? CB5 2NC 300 C 1 HETATM 48 C CG5 2NC . . . C 2 19.906 23.013 8.309 1 22.83 ? CG5 2NC 300 C 1 HETATM 49 C CD4 2NC . . . C 2 18.53 23.148 7.634 1 27.65 ? CD4 2NC 300 C 1 HETATM 50 N NE 2NC . . . C 2 17.755 21.902 7.604 1 30.7 ? NE 2NC 300 C 1 HETATM 51 C CZ 2NC . . . C 2 17.602 21.125 6.529 1 30.84 ? CZ 2NC 300 C 1 HETATM 52 N NH1 2NC . . . C 2 18.175 21.449 5.377 1 31.46 ? NH1 2NC 300 C 1 HETATM 53 N NH2 2NC . . . C 2 16.851 20.033 6.599 1 30.86 ? NH2 2NC 300 C 1 HETATM 54 N N6 2NC . . . C 2 23.813 23.227 8.303 1 13.77 ? N6 2NC 300 C 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 878 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #