data_1FGX
#
_model_server_result.job_id            hWi8cqPx7Vb0I50_-4fPZA 
_model_server_result.datetime_utc      '2024-11-13 05:07:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fgx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    1FGX 
#
_exptl.entry_id    1FGX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1FGX 
_cell.length_a            108.5 
_cell.length_b            161 
_cell.length_c            107.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FGX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,C,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 A CYS 134 1_555 A SG CYS 62 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 133 A CYS 247 1_555 A SG CYS 152 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 B SG CYS 20 B CYS 134 1_555 B SG CYS 62 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 133 B CYS 247 1_555 B SG CYS 152 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C9 H13 N2 O9 P' 
_chem_comp.formula_weight    324.181 
_chem_comp.id                U5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 U5P sing 358 n n 
N1 C6 U5P sing 359 n n 
N1 C1' U5P sing 360 n n 
C2 N3 U5P sing 361 n n 
C2 O2 U5P doub 362 n n 
N3 C4 U5P sing 363 n n 
N3 HN3 U5P sing 364 n n 
C4 C5 U5P sing 365 n n 
C4 O4 U5P doub 366 n n 
C5 C6 U5P doub 367 n n 
C5 H5 U5P sing 368 n n 
C6 H6 U5P sing 369 n n 
C1' C2' U5P sing 370 n n 
C1' O4' U5P sing 371 n n 
C1' H1' U5P sing 372 n n 
C2' O2' U5P sing 373 n n 
C2' C3' U5P sing 374 n n 
C2' H2' U5P sing 375 n n 
O2' HO2' U5P sing 376 n n 
C3' C4' U5P sing 377 n n 
C3' O3' U5P sing 378 n n 
C3' H3' U5P sing 379 n n 
C4' O4' U5P sing 380 n n 
C4' C5' U5P sing 381 n n 
C4' H4' U5P sing 382 n n 
O3' HO3' U5P sing 383 n n 
C5' O5' U5P sing 384 n n 
C5' "H5'1" U5P sing 385 n n 
C5' "H5'2" U5P sing 386 n n 
O5' P U5P sing 387 n n 
P O1P U5P doub 388 n n 
P O2P U5P sing 389 n n 
P O3P U5P sing 390 n n 
O2P HOP2 U5P sing 391 n n 
O3P HOP3 U5P sing 392 n n 
#
_atom_sites.entry_id                     1FGX 
_atom_sites.fract_transf_matrix[1][1]    0.009217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006211 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009311 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 U5P B 1 101 101 U5P U5P . 
D 3 HOH A 1 501 501 HOH WAT . 
D 3 HOH A 2 502 502 HOH WAT . 
D 3 HOH A 3 503 503 HOH WAT . 
D 3 HOH A 4 504 504 HOH WAT . 
D 3 HOH A 5 505 505 HOH WAT . 
D 3 HOH A 6 506 506 HOH WAT . 
D 3 HOH A 7 507 507 HOH WAT . 
D 3 HOH A 8 508 508 HOH WAT . 
D 3 HOH A 9 509 509 HOH WAT . 
D 3 HOH A 10 510 510 HOH WAT . 
D 3 HOH A 11 511 511 HOH WAT . 
D 3 HOH A 12 512 512 HOH WAT . 
D 3 HOH A 13 513 513 HOH WAT . 
D 3 HOH A 14 514 514 HOH WAT . 
D 3 HOH A 15 515 515 HOH WAT . 
D 3 HOH A 16 516 516 HOH WAT . 
D 3 HOH A 17 517 517 HOH WAT . 
D 3 HOH A 18 520 520 HOH WAT . 
D 3 HOH A 19 521 521 HOH WAT . 
D 3 HOH A 20 543 543 HOH WAT . 
D 3 HOH A 21 544 544 HOH WAT . 
D 3 HOH A 22 545 545 HOH WAT . 
D 3 HOH A 23 546 546 HOH WAT . 
D 3 HOH A 24 547 547 HOH WAT . 
D 3 HOH A 25 548 548 HOH WAT . 
D 3 HOH A 26 549 549 HOH WAT . 
D 3 HOH A 27 550 550 HOH WAT . 
D 3 HOH A 28 551 551 HOH WAT . 
D 3 HOH A 29 552 552 HOH WAT . 
D 3 HOH A 30 553 553 HOH WAT . 
D 3 HOH A 31 562 562 HOH WAT . 
D 3 HOH A 32 563 563 HOH WAT . 
D 3 HOH A 33 564 564 HOH WAT . 
D 3 HOH A 34 581 581 HOH WAT . 
D 3 HOH A 35 584 584 HOH WAT . 
D 3 HOH A 36 588 588 HOH WAT . 
D 3 HOH A 37 591 591 HOH WAT . 
D 3 HOH A 38 592 592 HOH WAT . 
D 3 HOH A 39 593 593 HOH WAT . 
D 3 HOH A 40 595 595 HOH WAT . 
D 3 HOH A 41 596 596 HOH WAT . 
D 3 HOH A 42 597 597 HOH WAT . 
D 3 HOH A 43 598 598 HOH WAT . 
D 3 HOH A 44 599 599 HOH WAT . 
D 3 HOH A 45 600 600 HOH WAT . 
D 3 HOH A 46 601 601 HOH WAT . 
D 3 HOH A 47 602 602 HOH WAT . 
D 3 HOH A 48 603 603 HOH WAT . 
D 3 HOH A 49 604 604 HOH WAT . 
D 3 HOH A 50 611 611 HOH WAT . 
D 3 HOH A 51 612 612 HOH WAT . 
D 3 HOH A 52 614 614 HOH WAT . 
D 3 HOH A 53 617 617 HOH WAT . 
D 3 HOH A 54 619 619 HOH WAT . 
D 3 HOH A 55 625 625 HOH WAT . 
D 3 HOH A 56 627 627 HOH WAT . 
D 3 HOH A 57 628 628 HOH WAT . 
D 3 HOH A 58 629 629 HOH WAT . 
D 3 HOH A 59 630 630 HOH WAT . 
D 3 HOH A 60 631 631 HOH WAT . 
D 3 HOH A 61 632 632 HOH WAT . 
D 3 HOH A 62 633 633 HOH WAT . 
D 3 HOH A 63 634 634 HOH WAT . 
D 3 HOH A 64 635 635 HOH WAT . 
D 3 HOH A 65 636 636 HOH WAT . 
D 3 HOH A 66 637 637 HOH WAT . 
D 3 HOH A 67 640 640 HOH WAT . 
D 3 HOH A 68 643 643 HOH WAT . 
D 3 HOH A 69 645 645 HOH WAT . 
D 3 HOH A 70 646 646 HOH WAT . 
D 3 HOH A 71 647 647 HOH WAT . 
D 3 HOH A 72 648 648 HOH WAT . 
D 3 HOH A 73 649 649 HOH WAT . 
E 3 HOH B 1 518 518 HOH WAT . 
E 3 HOH B 2 519 519 HOH WAT . 
E 3 HOH B 3 522 522 HOH WAT . 
E 3 HOH B 4 523 523 HOH WAT . 
E 3 HOH B 5 524 524 HOH WAT . 
E 3 HOH B 6 525 525 HOH WAT . 
E 3 HOH B 7 526 526 HOH WAT . 
E 3 HOH B 8 527 527 HOH WAT . 
E 3 HOH B 9 528 528 HOH WAT . 
E 3 HOH B 10 529 529 HOH WAT . 
E 3 HOH B 11 530 530 HOH WAT . 
E 3 HOH B 12 531 531 HOH WAT . 
E 3 HOH B 13 532 532 HOH WAT . 
E 3 HOH B 14 533 533 HOH WAT . 
E 3 HOH B 15 534 534 HOH WAT . 
E 3 HOH B 16 535 535 HOH WAT . 
E 3 HOH B 17 536 536 HOH WAT . 
E 3 HOH B 18 537 537 HOH WAT . 
E 3 HOH B 19 538 538 HOH WAT . 
E 3 HOH B 20 539 539 HOH WAT . 
E 3 HOH B 21 540 540 HOH WAT . 
E 3 HOH B 22 541 541 HOH WAT . 
E 3 HOH B 23 542 542 HOH WAT . 
E 3 HOH B 24 554 554 HOH WAT . 
E 3 HOH B 25 555 555 HOH WAT . 
E 3 HOH B 26 558 558 HOH WAT . 
E 3 HOH B 27 559 559 HOH WAT . 
E 3 HOH B 28 560 560 HOH WAT . 
E 3 HOH B 29 561 561 HOH WAT . 
E 3 HOH B 30 565 565 HOH WAT . 
E 3 HOH B 31 567 567 HOH WAT . 
E 3 HOH B 32 568 568 HOH WAT . 
E 3 HOH B 33 570 570 HOH WAT . 
E 3 HOH B 34 571 571 HOH WAT . 
E 3 HOH B 35 572 572 HOH WAT . 
E 3 HOH B 36 573 573 HOH WAT . 
E 3 HOH B 37 574 574 HOH WAT . 
E 3 HOH B 38 575 575 HOH WAT . 
E 3 HOH B 39 576 576 HOH WAT . 
E 3 HOH B 40 577 577 HOH WAT . 
E 3 HOH B 41 578 578 HOH WAT . 
E 3 HOH B 42 579 579 HOH WAT . 
E 3 HOH B 43 580 580 HOH WAT . 
E 3 HOH B 44 582 582 HOH WAT . 
E 3 HOH B 45 583 583 HOH WAT . 
E 3 HOH B 46 585 585 HOH WAT . 
E 3 HOH B 47 586 586 HOH WAT . 
E 3 HOH B 48 587 587 HOH WAT . 
E 3 HOH B 49 589 589 HOH WAT . 
E 3 HOH B 50 594 594 HOH WAT . 
E 3 HOH B 51 605 605 HOH WAT . 
E 3 HOH B 52 606 606 HOH WAT . 
E 3 HOH B 53 607 607 HOH WAT . 
E 3 HOH B 54 608 608 HOH WAT . 
E 3 HOH B 55 609 609 HOH WAT . 
E 3 HOH B 56 610 610 HOH WAT . 
E 3 HOH B 57 613 613 HOH WAT . 
E 3 HOH B 58 615 615 HOH WAT . 
E 3 HOH B 59 616 616 HOH WAT . 
E 3 HOH B 60 618 618 HOH WAT . 
E 3 HOH B 61 620 620 HOH WAT . 
E 3 HOH B 62 621 621 HOH WAT . 
E 3 HOH B 63 622 622 HOH WAT . 
E 3 HOH B 64 623 623 HOH WAT . 
E 3 HOH B 65 624 624 HOH WAT . 
E 3 HOH B 66 626 626 HOH WAT . 
E 3 HOH B 67 638 638 HOH WAT . 
E 3 HOH B 68 639 639 HOH WAT . 
E 3 HOH B 69 641 641 HOH WAT . 
E 3 HOH B 70 642 642 HOH WAT . 
E 3 HOH B 71 644 644 HOH WAT . 
E 3 HOH B 72 650 650 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 U5P . . . C 2 20.805 19.924 37.759 1 98.03 ? N1 U5P 101 B 1 
HETATM 2 C C2 U5P . . . C 2 21.75 20.324 38.734 1 97.52 ? C2 U5P 101 B 1 
HETATM 3 N N3 U5P . . . C 2 21.231 21.057 39.824 1 97.03 ? N3 U5P 101 B 1 
HETATM 4 C C4 U5P . . . C 2 19.885 21.44 40.044 1 97.56 ? C4 U5P 101 B 1 
HETATM 5 C C5 U5P . . . C 2 18.986 21.011 38.998 1 97.9 ? C5 U5P 101 B 1 
HETATM 6 C C6 U5P . . . C 2 19.434 20.304 37.945 1 98.03 ? C6 U5P 101 B 1 
HETATM 7 O O2 U5P . . . C 2 22.941 20.008 38.596 1 98.03 ? O2 U5P 101 B 1 
HETATM 8 O O4 U5P . . . C 2 19.602 22.076 41.063 1 92.2 ? O4 U5P 101 B 1 
HETATM 9 C C1' U5P . . . C 2 21.286 19.051 36.541 1 98.03 ? C1' U5P 101 B 1 
HETATM 10 C C2' U5P . . . C 2 20.433 18.994 35.249 1 98.03 ? C2' U5P 101 B 1 
HETATM 11 O O2' U5P . . . C 2 19.157 18.288 35.384 1 97.58 ? O2' U5P 101 B 1 
HETATM 12 C C3' U5P . . . C 2 21.447 18.41 34.201 1 98.03 ? C3' U5P 101 B 1 
HETATM 13 C C4' U5P . . . C 2 22.669 19.265 34.579 1 98.03 ? C4' U5P 101 B 1 
HETATM 14 O O3' U5P . . . C 2 21.622 16.934 34.293 1 98.03 ? O3' U5P 101 B 1 
HETATM 15 O O4' U5P . . . C 2 22.653 19.26 36.069 1 98.03 ? O4' U5P 101 B 1 
HETATM 16 C C5' U5P . . . C 2 22.647 20.776 34.112 1 98.03 ? C5' U5P 101 B 1 
HETATM 17 O O5' U5P . . . C 2 23.433 21.754 34.869 1 98.03 ? O5' U5P 101 B 1 
HETATM 18 P P U5P . . . C 2 25.065 21.698 34.883 1 98.03 ? P U5P 101 B 1 
HETATM 19 O O1P U5P . . . C 2 25.748 20.429 35.451 1 95.66 ? O1P U5P 101 B 1 
HETATM 20 O O2P U5P . . . C 2 25.619 22.794 35.733 1 98.03 ? O2P U5P 101 B 1 
HETATM 21 O O3P U5P . . . C 2 25.395 22.155 33.289 1 98.03 ? O3P U5P 101 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           21 
#