data_1FIW # _model_server_result.job_id 5NKu-pwvXeOx9KFEenyY6A _model_server_result.datetime_utc '2024-11-01 05:22:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":305}' # _entry.id 1FIW # _exptl.entry_id 1FIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'P-AMINO BENZAMIDINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FIW _cell.length_a 105.288 _cell.length_b 105.288 _cell.length_c 120.835 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 5 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG S 301 NAG 3 n C NAG 2 B 2 NAG S 302 NAG 3 n C BMA 3 B 3 BMA S 303 MAN 3 n C MAN 4 B 4 MAN S 304 MAN 3 n C FUL 5 B 5 FUL S 300 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 42 1_555 A SG CYS 48 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 113 A CYS 114 1_555 B SG CYS 5 L CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 121 A CYS 122 1_555 B SG CYS 9 L CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf4 A SG CYS 136 A CYS 136 1_555 A SG CYS 205 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 184 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 195 A CYS 191 1_555 A SG CYS 225 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 169 A ASN 169 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale2 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale3 C O6 NAG . B NAG 1 1_555 C C1 FUL . B FUL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale4 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale5 C O6 BMA . B BMA 3 1_555 C C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C7 H10 N3 1' _chem_comp.formula_weight 136.174 _chem_comp.id PBZ _chem_comp.mon_nstd_flag . _chem_comp.name 'P-AMINO BENZAMIDINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C7 PBZ sing 338 n n N2 HN21 PBZ sing 339 n n N2 HN22 PBZ sing 340 n n N3 C7 PBZ doub 341 n n N3 HN31 PBZ sing 342 n n N3 HN32 PBZ sing 343 n n C7 C4 PBZ sing 344 n n C4 C3 PBZ sing 345 n y C4 C5 PBZ doub 346 n y C2 C3 PBZ doub 347 n y C2 C1 PBZ sing 348 n y C2 H2 PBZ sing 349 n n C3 H3 PBZ sing 350 n n C5 C6 PBZ sing 351 n y C5 H5 PBZ sing 352 n n C6 C1 PBZ doub 353 n y C6 H6 PBZ sing 354 n n C1 N1 PBZ sing 355 n n N1 HN11 PBZ sing 356 n n N1 HN12 PBZ sing 357 n n # _atom_sites.entry_id 1FIW _atom_sites.fract_transf_matrix[1][1] 0.009498 _atom_sites.fract_transf_matrix[1][2] 0.005484 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PBZ A 1 305 301 PBZ PBZ . E 4 PBZ A 1 306 302 PBZ PBZ . F 5 HOH A 1 307 1 HOH HOH . F 5 HOH A 2 308 2 HOH HOH . F 5 HOH A 3 309 3 HOH HOH . F 5 HOH A 4 310 4 HOH HOH . F 5 HOH A 5 311 5 HOH HOH . F 5 HOH A 6 312 6 HOH HOH . F 5 HOH A 7 313 7 HOH HOH . F 5 HOH A 8 314 8 HOH HOH . F 5 HOH A 9 315 9 HOH HOH . F 5 HOH A 10 316 10 HOH HOH . F 5 HOH A 11 317 11 HOH HOH . F 5 HOH A 12 318 12 HOH HOH . F 5 HOH A 13 319 13 HOH HOH . F 5 HOH A 14 320 14 HOH HOH . F 5 HOH A 15 321 15 HOH HOH . F 5 HOH A 16 322 16 HOH HOH . F 5 HOH A 17 323 17 HOH HOH . F 5 HOH A 18 324 18 HOH HOH . F 5 HOH A 19 325 19 HOH HOH . F 5 HOH A 20 326 20 HOH HOH . F 5 HOH A 21 327 21 HOH HOH . F 5 HOH A 22 328 22 HOH HOH . F 5 HOH A 23 329 23 HOH HOH . F 5 HOH A 24 330 24 HOH HOH . F 5 HOH A 25 331 25 HOH HOH . F 5 HOH A 26 332 26 HOH HOH . F 5 HOH A 27 333 27 HOH HOH . F 5 HOH A 28 334 28 HOH HOH . F 5 HOH A 29 335 29 HOH HOH . F 5 HOH A 30 336 30 HOH HOH . F 5 HOH A 31 337 31 HOH HOH . F 5 HOH A 32 338 32 HOH HOH . F 5 HOH A 33 339 34 HOH HOH . F 5 HOH A 34 340 35 HOH HOH . F 5 HOH A 35 341 36 HOH HOH . F 5 HOH A 36 342 37 HOH HOH . F 5 HOH A 37 343 38 HOH HOH . F 5 HOH A 38 344 39 HOH HOH . F 5 HOH A 39 345 40 HOH HOH . F 5 HOH A 40 346 41 HOH HOH . F 5 HOH A 41 347 43 HOH HOH . F 5 HOH A 42 348 44 HOH HOH . F 5 HOH A 43 349 45 HOH HOH . F 5 HOH A 44 350 46 HOH HOH . F 5 HOH A 45 351 47 HOH HOH . F 5 HOH A 46 352 48 HOH HOH . F 5 HOH A 47 353 49 HOH HOH . F 5 HOH A 48 354 50 HOH HOH . F 5 HOH A 49 355 52 HOH HOH . F 5 HOH A 50 356 53 HOH HOH . F 5 HOH A 51 357 54 HOH HOH . F 5 HOH A 52 358 55 HOH HOH . F 5 HOH A 53 359 56 HOH HOH . F 5 HOH A 54 360 57 HOH HOH . F 5 HOH A 55 361 58 HOH HOH . F 5 HOH A 56 362 59 HOH HOH . F 5 HOH A 57 363 60 HOH HOH . F 5 HOH A 58 364 61 HOH HOH . F 5 HOH A 59 365 62 HOH HOH . F 5 HOH A 60 366 63 HOH HOH . F 5 HOH A 61 367 65 HOH HOH . F 5 HOH A 62 368 66 HOH HOH . F 5 HOH A 63 369 67 HOH HOH . F 5 HOH A 64 370 68 HOH HOH . F 5 HOH A 65 371 69 HOH HOH . F 5 HOH A 66 372 70 HOH HOH . F 5 HOH A 67 373 71 HOH HOH . F 5 HOH A 68 374 72 HOH HOH . F 5 HOH A 69 375 73 HOH HOH . F 5 HOH A 70 376 74 HOH HOH . F 5 HOH A 71 377 75 HOH HOH . F 5 HOH A 72 378 76 HOH HOH . F 5 HOH A 73 379 77 HOH HOH . F 5 HOH A 74 380 79 HOH HOH . F 5 HOH A 75 381 80 HOH HOH . F 5 HOH A 76 382 81 HOH HOH . F 5 HOH A 77 383 82 HOH HOH . F 5 HOH A 78 384 83 HOH HOH . F 5 HOH A 79 385 84 HOH HOH . F 5 HOH A 80 386 86 HOH HOH . F 5 HOH A 81 387 87 HOH HOH . F 5 HOH A 82 388 88 HOH HOH . F 5 HOH A 83 389 89 HOH HOH . F 5 HOH A 84 390 90 HOH HOH . F 5 HOH A 85 391 91 HOH HOH . F 5 HOH A 86 392 92 HOH HOH . F 5 HOH A 87 393 93 HOH HOH . F 5 HOH A 88 394 94 HOH HOH . F 5 HOH A 89 395 95 HOH HOH . F 5 HOH A 90 396 96 HOH HOH . F 5 HOH A 91 397 97 HOH HOH . F 5 HOH A 92 398 98 HOH HOH . F 5 HOH A 93 399 99 HOH HOH . F 5 HOH A 94 400 100 HOH HOH . F 5 HOH A 95 401 101 HOH HOH . F 5 HOH A 96 402 102 HOH HOH . F 5 HOH A 97 403 103 HOH HOH . F 5 HOH A 98 404 104 HOH HOH . F 5 HOH A 99 405 105 HOH HOH . F 5 HOH A 100 406 107 HOH HOH . F 5 HOH A 101 407 108 HOH HOH . F 5 HOH A 102 408 110 HOH HOH . F 5 HOH A 103 409 111 HOH HOH . F 5 HOH A 104 410 112 HOH HOH . F 5 HOH A 105 411 113 HOH HOH . F 5 HOH A 106 412 114 HOH HOH . F 5 HOH A 107 413 115 HOH HOH . F 5 HOH A 108 414 116 HOH HOH . F 5 HOH A 109 415 117 HOH HOH . F 5 HOH A 110 416 118 HOH HOH . F 5 HOH A 111 417 119 HOH HOH . F 5 HOH A 112 418 120 HOH HOH . F 5 HOH A 113 419 122 HOH HOH . F 5 HOH A 114 420 124 HOH HOH . F 5 HOH A 115 421 126 HOH HOH . F 5 HOH A 116 422 127 HOH HOH . F 5 HOH A 117 423 128 HOH HOH . F 5 HOH A 118 424 129 HOH HOH . F 5 HOH A 119 425 130 HOH HOH . F 5 HOH A 120 426 132 HOH HOH . F 5 HOH A 121 427 133 HOH HOH . F 5 HOH A 122 428 134 HOH HOH . F 5 HOH A 123 429 135 HOH HOH . F 5 HOH A 124 430 136 HOH HOH . F 5 HOH A 125 431 137 HOH HOH . F 5 HOH A 126 432 138 HOH HOH . F 5 HOH A 127 433 139 HOH HOH . F 5 HOH A 128 434 140 HOH HOH . F 5 HOH A 129 435 141 HOH HOH . F 5 HOH A 130 436 142 HOH HOH . F 5 HOH A 131 437 143 HOH HOH . F 5 HOH A 132 438 145 HOH HOH . F 5 HOH A 133 439 146 HOH HOH . F 5 HOH A 134 440 147 HOH HOH . F 5 HOH A 135 441 148 HOH HOH . F 5 HOH A 136 442 149 HOH HOH . F 5 HOH A 137 443 150 HOH HOH . F 5 HOH A 138 444 151 HOH HOH . F 5 HOH A 139 445 152 HOH HOH . F 5 HOH A 140 446 153 HOH HOH . F 5 HOH A 141 447 154 HOH HOH . F 5 HOH A 142 448 155 HOH HOH . F 5 HOH A 143 449 156 HOH HOH . F 5 HOH A 144 450 158 HOH HOH . F 5 HOH A 145 451 159 HOH HOH . F 5 HOH A 146 452 160 HOH HOH . F 5 HOH A 147 453 161 HOH HOH . F 5 HOH A 148 454 162 HOH HOH . F 5 HOH A 149 455 164 HOH HOH . F 5 HOH A 150 456 165 HOH HOH . F 5 HOH A 151 457 166 HOH HOH . F 5 HOH A 152 458 167 HOH HOH . F 5 HOH A 153 459 168 HOH HOH . F 5 HOH A 154 460 169 HOH HOH . F 5 HOH A 155 461 170 HOH HOH . F 5 HOH A 156 462 171 HOH HOH . F 5 HOH A 157 463 172 HOH HOH . F 5 HOH A 158 464 174 HOH HOH . F 5 HOH A 159 465 175 HOH HOH . F 5 HOH A 160 466 177 HOH HOH . F 5 HOH A 161 467 178 HOH HOH . F 5 HOH A 162 468 179 HOH HOH . F 5 HOH A 163 469 180 HOH HOH . F 5 HOH A 164 470 181 HOH HOH . F 5 HOH A 165 471 183 HOH HOH . F 5 HOH A 166 472 184 HOH HOH . F 5 HOH A 167 473 185 HOH HOH . F 5 HOH A 168 474 186 HOH HOH . F 5 HOH A 169 475 188 HOH HOH . F 5 HOH A 170 476 189 HOH HOH . F 5 HOH A 171 477 191 HOH HOH . F 5 HOH A 172 478 192 HOH HOH . F 5 HOH A 173 479 193 HOH HOH . F 5 HOH A 174 480 194 HOH HOH . F 5 HOH A 175 481 195 HOH HOH . F 5 HOH A 176 482 196 HOH HOH . F 5 HOH A 177 483 197 HOH HOH . F 5 HOH A 178 484 198 HOH HOH . F 5 HOH A 179 485 199 HOH HOH . F 5 HOH A 180 486 200 HOH HOH . F 5 HOH A 181 487 201 HOH HOH . G 5 HOH L 1 33 33 HOH HOH . G 5 HOH L 2 51 51 HOH HOH . G 5 HOH L 3 64 64 HOH HOH . G 5 HOH L 4 85 85 HOH HOH . G 5 HOH L 5 109 109 HOH HOH . G 5 HOH L 6 125 125 HOH HOH . G 5 HOH L 7 131 131 HOH HOH . G 5 HOH L 8 144 144 HOH HOH . G 5 HOH L 9 176 176 HOH HOH . G 5 HOH L 10 202 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PBZ . . . D 4 55.12 45.981 41.115 1 30.57 ? N2 PBZ 305 A 1 HETATM 2 N N3 PBZ . . . D 4 55.952 46.871 43.169 1 28.11 ? N3 PBZ 305 A 1 HETATM 3 C C7 PBZ . . . D 4 55.016 47.039 42.071 1 29.63 ? C7 PBZ 305 A 1 HETATM 4 C C4 PBZ . . . D 4 53.667 47.584 42.397 1 31.62 ? C4 PBZ 305 A 1 HETATM 5 C C2 PBZ . . . D 4 51.288 47.896 42.031 1 33.19 ? C2 PBZ 305 A 1 HETATM 6 C C3 PBZ . . . D 4 52.506 47.294 41.682 1 33.63 ? C3 PBZ 305 A 1 HETATM 7 C C5 PBZ . . . D 4 53.612 48.515 43.415 1 30.7 ? C5 PBZ 305 A 1 HETATM 8 C C6 PBZ . . . D 4 52.398 49.136 43.75 1 31.39 ? C6 PBZ 305 A 1 HETATM 9 C C1 PBZ . . . D 4 51.226 48.837 43.071 1 33.77 ? C1 PBZ 305 A 1 HETATM 10 N N1 PBZ . . . D 4 49.999 49.472 43.404 1 35.39 ? N1 PBZ 305 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #