data_1FJ8 # _model_server_result.job_id kEWkkzpB4hS0CnUwtjdJ-w _model_server_result.datetime_utc '2025-02-23 19:14:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":500}' # _entry.id 1FJ8 # _exptl.entry_id 1FJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FJ8 _cell.length_a 59.227 _cell.length_b 139.585 _cell.length_c 212.228 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 163 A CYS 163 1_555 E C2 CER . A CER 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? covale ? covale2 B SG CYS 163 B CYS 163 1_555 F C2 CER . B CER 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? covale ? covale3 C SG CYS 163 C CYS 163 1_555 G C2 CER . C CER 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? covale ? covale4 D SG CYS 163 D CYS 163 1_555 H C2 CER . D CER 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? # _chem_comp.formula 'C12 H19 N O3' _chem_comp.formula_weight 225.284 _chem_comp.id CER _chem_comp.mon_nstd_flag . _chem_comp.name '(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CERULENIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 CER sing 70 n n C1 C2 CER sing 71 n n C1 O2 CER doub 72 n n N1 HN11 CER sing 73 n n N1 HN12 CER sing 74 n n O1 C4 CER doub 75 n n C2 C3 CER sing 76 n n C2 H21 CER sing 77 n n C2 H22 CER sing 78 n n C3 O3 CER sing 79 n n C3 C4 CER sing 80 n n C3 H31 CER sing 81 n n O3 HO3 CER sing 82 n n C4 C5 CER sing 83 n n C5 C6 CER sing 84 n n C5 H51 CER sing 85 n n C5 H52 CER sing 86 n n C6 C7 CER sing 87 n n C6 H61 CER sing 88 n n C6 H62 CER sing 89 n n C7 C8 CER doub 90 e n C7 H71 CER sing 91 n n C8 C9 CER sing 92 n n C8 H81 CER sing 93 n n C9 C10 CER sing 94 n n C9 H91 CER sing 95 n n C9 H92 CER sing 96 n n C10 C11 CER doub 97 e n C10 H101 CER sing 98 n n C11 C12 CER sing 99 n n C11 H111 CER sing 100 n n C12 H121 CER sing 101 n n C12 H122 CER sing 102 n n C12 H123 CER sing 103 n n # _atom_sites.entry_id 1FJ8 _atom_sites.fract_transf_matrix[1][1] 0.016884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CER A 1 500 500 CER CER . F 2 CER B 1 500 500 CER CER . G 2 CER C 1 500 500 CER CER . H 2 CER D 1 500 500 CER CER . I 3 HOH A 1 501 2 HOH HOH . I 3 HOH A 2 502 9 HOH HOH . I 3 HOH A 3 503 10 HOH HOH . I 3 HOH A 4 504 14 HOH HOH . I 3 HOH A 5 505 17 HOH HOH . I 3 HOH A 6 506 20 HOH HOH . I 3 HOH A 7 507 23 HOH HOH . I 3 HOH A 8 508 25 HOH HOH . I 3 HOH A 9 509 26 HOH HOH . I 3 HOH A 10 510 27 HOH HOH . I 3 HOH A 11 511 31 HOH HOH . I 3 HOH A 12 512 33 HOH HOH . I 3 HOH A 13 513 40 HOH HOH . I 3 HOH A 14 514 57 HOH HOH . I 3 HOH A 15 515 58 HOH HOH . I 3 HOH A 16 516 59 HOH HOH . I 3 HOH A 17 517 63 HOH HOH . I 3 HOH A 18 518 65 HOH HOH . I 3 HOH A 19 519 66 HOH HOH . I 3 HOH A 20 520 68 HOH HOH . I 3 HOH A 21 521 69 HOH HOH . I 3 HOH A 22 522 77 HOH HOH . I 3 HOH A 23 523 78 HOH HOH . I 3 HOH A 24 524 79 HOH HOH . I 3 HOH A 25 525 83 HOH HOH . I 3 HOH A 26 526 87 HOH HOH . I 3 HOH A 27 527 90 HOH HOH . I 3 HOH A 28 528 95 HOH HOH . I 3 HOH A 29 529 98 HOH HOH . I 3 HOH A 30 530 102 HOH HOH . I 3 HOH A 31 531 103 HOH HOH . I 3 HOH A 32 532 105 HOH HOH . I 3 HOH A 33 533 107 HOH HOH . I 3 HOH A 34 534 111 HOH HOH . I 3 HOH A 35 535 112 HOH HOH . I 3 HOH A 36 536 116 HOH HOH . I 3 HOH A 37 537 122 HOH HOH . I 3 HOH A 38 538 127 HOH HOH . I 3 HOH A 39 539 135 HOH HOH . I 3 HOH A 40 540 138 HOH HOH . I 3 HOH A 41 541 140 HOH HOH . I 3 HOH A 42 542 158 HOH HOH . I 3 HOH A 43 543 160 HOH HOH . I 3 HOH A 44 544 161 HOH HOH . I 3 HOH A 45 545 164 HOH HOH . I 3 HOH A 46 546 175 HOH HOH . I 3 HOH A 47 547 177 HOH HOH . I 3 HOH A 48 548 178 HOH HOH . I 3 HOH A 49 549 182 HOH HOH . I 3 HOH A 50 550 185 HOH HOH . I 3 HOH A 51 551 187 HOH HOH . I 3 HOH A 52 552 188 HOH HOH . I 3 HOH A 53 553 189 HOH HOH . I 3 HOH A 54 554 190 HOH HOH . I 3 HOH A 55 555 191 HOH HOH . I 3 HOH A 56 556 192 HOH HOH . I 3 HOH A 57 557 193 HOH HOH . I 3 HOH A 58 558 194 HOH HOH . I 3 HOH A 59 559 195 HOH HOH . I 3 HOH A 60 560 196 HOH HOH . I 3 HOH A 61 561 197 HOH HOH . I 3 HOH A 62 562 198 HOH HOH . I 3 HOH A 63 563 200 HOH HOH . I 3 HOH A 64 564 212 HOH HOH . J 3 HOH B 1 501 1 HOH HOH . J 3 HOH B 2 502 3 HOH HOH . J 3 HOH B 3 503 4 HOH HOH . J 3 HOH B 4 504 5 HOH HOH . J 3 HOH B 5 505 8 HOH HOH . J 3 HOH B 6 506 15 HOH HOH . J 3 HOH B 7 507 18 HOH HOH . J 3 HOH B 8 508 28 HOH HOH . J 3 HOH B 9 509 37 HOH HOH . J 3 HOH B 10 510 38 HOH HOH . J 3 HOH B 11 511 41 HOH HOH . J 3 HOH B 12 512 42 HOH HOH . J 3 HOH B 13 513 43 HOH HOH . J 3 HOH B 14 514 45 HOH HOH . J 3 HOH B 15 515 47 HOH HOH . J 3 HOH B 16 516 48 HOH HOH . J 3 HOH B 17 517 49 HOH HOH . J 3 HOH B 18 518 50 HOH HOH . J 3 HOH B 19 519 53 HOH HOH . J 3 HOH B 20 520 55 HOH HOH . J 3 HOH B 21 521 56 HOH HOH . J 3 HOH B 22 522 60 HOH HOH . J 3 HOH B 23 523 61 HOH HOH . J 3 HOH B 24 524 64 HOH HOH . J 3 HOH B 25 525 71 HOH HOH . J 3 HOH B 26 526 89 HOH HOH . J 3 HOH B 27 527 94 HOH HOH . J 3 HOH B 28 528 97 HOH HOH . J 3 HOH B 29 529 101 HOH HOH . J 3 HOH B 30 530 106 HOH HOH . J 3 HOH B 31 531 108 HOH HOH . J 3 HOH B 32 532 109 HOH HOH . J 3 HOH B 33 533 110 HOH HOH . J 3 HOH B 34 534 128 HOH HOH . J 3 HOH B 35 535 134 HOH HOH . J 3 HOH B 36 536 144 HOH HOH . J 3 HOH B 37 537 145 HOH HOH . J 3 HOH B 38 538 148 HOH HOH . J 3 HOH B 39 539 151 HOH HOH . J 3 HOH B 40 540 152 HOH HOH . J 3 HOH B 41 541 155 HOH HOH . J 3 HOH B 42 542 157 HOH HOH . J 3 HOH B 43 543 159 HOH HOH . J 3 HOH B 44 544 170 HOH HOH . J 3 HOH B 45 545 179 HOH HOH . J 3 HOH B 46 546 180 HOH HOH . J 3 HOH B 47 547 184 HOH HOH . J 3 HOH B 48 548 186 HOH HOH . J 3 HOH B 49 549 199 HOH HOH . J 3 HOH B 50 550 201 HOH HOH . J 3 HOH B 51 551 202 HOH HOH . J 3 HOH B 52 552 203 HOH HOH . J 3 HOH B 53 553 204 HOH HOH . J 3 HOH B 54 554 205 HOH HOH . J 3 HOH B 55 555 206 HOH HOH . J 3 HOH B 56 556 207 HOH HOH . J 3 HOH B 57 557 208 HOH HOH . J 3 HOH B 58 558 209 HOH HOH . J 3 HOH B 59 559 210 HOH HOH . J 3 HOH B 60 560 211 HOH HOH . J 3 HOH B 61 561 213 HOH HOH . K 3 HOH C 1 501 11 HOH HOH . K 3 HOH C 2 502 36 HOH HOH . K 3 HOH C 3 503 51 HOH HOH . K 3 HOH C 4 504 54 HOH HOH . K 3 HOH C 5 505 62 HOH HOH . K 3 HOH C 6 506 67 HOH HOH . K 3 HOH C 7 507 70 HOH HOH . K 3 HOH C 8 508 72 HOH HOH . K 3 HOH C 9 509 73 HOH HOH . K 3 HOH C 10 510 74 HOH HOH . K 3 HOH C 11 511 76 HOH HOH . K 3 HOH C 12 512 80 HOH HOH . K 3 HOH C 13 513 81 HOH HOH . K 3 HOH C 14 514 82 HOH HOH . K 3 HOH C 15 515 84 HOH HOH . K 3 HOH C 16 516 88 HOH HOH . K 3 HOH C 17 517 92 HOH HOH . K 3 HOH C 18 518 93 HOH HOH . K 3 HOH C 19 519 96 HOH HOH . K 3 HOH C 20 520 99 HOH HOH . K 3 HOH C 21 521 104 HOH HOH . K 3 HOH C 22 522 114 HOH HOH . K 3 HOH C 23 523 117 HOH HOH . K 3 HOH C 24 524 130 HOH HOH . K 3 HOH C 25 525 133 HOH HOH . K 3 HOH C 26 526 139 HOH HOH . K 3 HOH C 27 527 146 HOH HOH . K 3 HOH C 28 528 147 HOH HOH . K 3 HOH C 29 529 150 HOH HOH . K 3 HOH C 30 530 153 HOH HOH . K 3 HOH C 31 531 154 HOH HOH . K 3 HOH C 32 532 162 HOH HOH . K 3 HOH C 33 533 165 HOH HOH . K 3 HOH C 34 534 169 HOH HOH . K 3 HOH C 35 535 171 HOH HOH . K 3 HOH C 36 536 172 HOH HOH . K 3 HOH C 37 537 173 HOH HOH . K 3 HOH C 38 538 176 HOH HOH . K 3 HOH C 39 539 181 HOH HOH . K 3 HOH C 40 540 214 HOH HOH . K 3 HOH C 41 541 215 HOH HOH . K 3 HOH C 42 542 216 HOH HOH . K 3 HOH C 43 543 217 HOH HOH . K 3 HOH C 44 544 218 HOH HOH . K 3 HOH C 45 545 219 HOH HOH . K 3 HOH C 46 546 220 HOH HOH . K 3 HOH C 47 547 221 HOH HOH . K 3 HOH C 48 548 222 HOH HOH . K 3 HOH C 49 549 223 HOH HOH . K 3 HOH C 50 550 224 HOH HOH . K 3 HOH C 51 551 226 HOH HOH . K 3 HOH C 52 552 238 HOH HOH . L 3 HOH D 1 501 6 HOH HOH . L 3 HOH D 2 502 7 HOH HOH . L 3 HOH D 3 503 12 HOH HOH . L 3 HOH D 4 504 13 HOH HOH . L 3 HOH D 5 505 16 HOH HOH . L 3 HOH D 6 506 19 HOH HOH . L 3 HOH D 7 507 21 HOH HOH . L 3 HOH D 8 508 22 HOH HOH . L 3 HOH D 9 509 24 HOH HOH . L 3 HOH D 10 510 29 HOH HOH . L 3 HOH D 11 511 30 HOH HOH . L 3 HOH D 12 512 32 HOH HOH . L 3 HOH D 13 513 34 HOH HOH . L 3 HOH D 14 514 35 HOH HOH . L 3 HOH D 15 515 39 HOH HOH . L 3 HOH D 16 516 44 HOH HOH . L 3 HOH D 17 517 46 HOH HOH . L 3 HOH D 18 518 52 HOH HOH . L 3 HOH D 19 519 75 HOH HOH . L 3 HOH D 20 520 85 HOH HOH . L 3 HOH D 21 521 86 HOH HOH . L 3 HOH D 22 522 91 HOH HOH . L 3 HOH D 23 523 100 HOH HOH . L 3 HOH D 24 524 113 HOH HOH . L 3 HOH D 25 525 115 HOH HOH . L 3 HOH D 26 526 118 HOH HOH . L 3 HOH D 27 527 119 HOH HOH . L 3 HOH D 28 528 120 HOH HOH . L 3 HOH D 29 529 121 HOH HOH . L 3 HOH D 30 530 123 HOH HOH . L 3 HOH D 31 531 124 HOH HOH . L 3 HOH D 32 532 125 HOH HOH . L 3 HOH D 33 533 126 HOH HOH . L 3 HOH D 34 534 129 HOH HOH . L 3 HOH D 35 535 131 HOH HOH . L 3 HOH D 36 536 132 HOH HOH . L 3 HOH D 37 537 136 HOH HOH . L 3 HOH D 38 538 137 HOH HOH . L 3 HOH D 39 539 141 HOH HOH . L 3 HOH D 40 540 142 HOH HOH . L 3 HOH D 41 541 143 HOH HOH . L 3 HOH D 42 542 149 HOH HOH . L 3 HOH D 43 543 156 HOH HOH . L 3 HOH D 44 544 163 HOH HOH . L 3 HOH D 45 545 166 HOH HOH . L 3 HOH D 46 546 167 HOH HOH . L 3 HOH D 47 547 168 HOH HOH . L 3 HOH D 48 548 174 HOH HOH . L 3 HOH D 49 549 183 HOH HOH . L 3 HOH D 50 550 225 HOH HOH . L 3 HOH D 51 551 227 HOH HOH . L 3 HOH D 52 552 228 HOH HOH . L 3 HOH D 53 553 229 HOH HOH . L 3 HOH D 54 554 230 HOH HOH . L 3 HOH D 55 555 231 HOH HOH . L 3 HOH D 56 556 232 HOH HOH . L 3 HOH D 57 557 233 HOH HOH . L 3 HOH D 58 558 234 HOH HOH . L 3 HOH D 59 559 235 HOH HOH . L 3 HOH D 60 560 236 HOH HOH . L 3 HOH D 61 561 237 HOH HOH . L 3 HOH D 62 562 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CER . . . G 2 38.657 -0.896 42.773 1 42.62 ? C1 CER 500 C 1 HETATM 2 N N1 CER . . . G 2 39.564 -0.942 43.737 1 43.68 ? N1 CER 500 C 1 HETATM 3 O O1 CER . . . G 2 41.469 1.847 40.4 1 41.32 ? O1 CER 500 C 1 HETATM 4 C C2 CER . . . G 2 38.974 0.028 41.591 1 38.73 ? C2 CER 500 C 1 HETATM 5 O O2 CER . . . G 2 37.617 -1.551 42.813 1 43.3 ? O2 CER 500 C 1 HETATM 6 C C3 CER . . . G 2 39.945 1.125 42.085 1 40.31 ? C3 CER 500 C 1 HETATM 7 O O3 CER . . . G 2 39.302 1.925 43.084 1 40.48 ? O3 CER 500 C 1 HETATM 8 C C4 CER . . . G 2 40.373 2.011 40.928 1 40.39 ? C4 CER 500 C 1 HETATM 9 C C5 CER . . . G 2 39.45 3.112 40.442 1 40.11 ? C5 CER 500 C 1 HETATM 10 C C6 CER . . . G 2 40.158 4.14 39.569 1 39.9 ? C6 CER 500 C 1 HETATM 11 C C7 CER . . . G 2 39.824 4.027 38.079 1 40.02 ? C7 CER 500 C 1 HETATM 12 C C8 CER . . . G 2 40.151 5.344 37.356 1 39.25 ? C8 CER 500 C 1 HETATM 13 C C9 CER . . . G 2 41.171 5.106 36.242 1 39.77 ? C9 CER 500 C 1 HETATM 14 C C10 CER . . . G 2 42.414 5.993 36.266 1 39.44 ? C10 CER 500 C 1 HETATM 15 C C11 CER . . . G 2 43.523 5.388 35.397 1 39.99 ? C11 CER 500 C 1 HETATM 16 C C12 CER . . . G 2 44.166 6.461 34.542 1 40.81 ? C12 CER 500 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #