data_1FKD # _model_server_result.job_id 8one2uWDRlR3Sue6YbVIZA _model_server_result.datetime_utc '2024-11-22 17:00:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":108}' # _entry.id 1FKD # _exptl.entry_id 1FKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 808.007 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 18-HYDROXYASCOMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FKD _cell.length_a 58.14 _cell.length_b 58.14 _cell.length_c 55.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 58.14 58.14 0 3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 58.14 58.14 0 4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C43 H69 N O13' _chem_comp.formula_weight 808.007 _chem_comp.id 818 _chem_comp.mon_nstd_flag . _chem_comp.name 18-HYDROXYASCOMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-685,818 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 818 sing 1 n n C1 O1 818 sing 2 n n C1 O2 818 doub 3 n n C2 C3 818 sing 4 n n C2 N7 818 sing 5 n n C2 H2 818 sing 6 n n C3 C4 818 sing 7 n n C3 H31A 818 sing 8 n n C3 H32A 818 sing 9 n n C4 C5 818 sing 10 n n C4 H41 818 sing 11 n n C4 H42 818 sing 12 n n C5 C6 818 sing 13 n n C5 H51 818 sing 14 n n C5 H52 818 sing 15 n n C6 N7 818 sing 16 n n C6 H61 818 sing 17 n n C6 H62 818 sing 18 n n C8 C9 818 sing 19 n n C8 N7 818 sing 20 n n C8 O3 818 doub 21 n n C9 C10 818 sing 22 n n C9 O4 818 doub 23 n n C10 C11 818 sing 24 n n C10 O5 818 sing 25 n n C10 O6 818 sing 26 n n C11 C12 818 sing 27 n n C11 C35 818 sing 28 n n C11 H11 818 sing 29 n n C12 C13 818 sing 30 n n C12 H121 818 sing 31 n n C12 H122 818 sing 32 n n C13 C14 818 sing 33 n n C13 O7 818 sing 34 n n C13 H13 818 sing 35 n n C14 C15 818 sing 36 n n C14 O5 818 sing 37 n n C14 H14 818 sing 38 n n C15 C16 818 sing 39 n n C15 O8 818 sing 40 n n C15 H15 818 sing 41 n n C16 C17 818 sing 42 n n C16 H161 818 sing 43 n n C16 H162 818 sing 44 n n C17 C18 818 sing 45 n n C17 C36 818 sing 46 n n C17 H17 818 sing 47 n n C18 C19 818 sing 48 n n C18 O13 818 sing 49 n n C18 H18 818 sing 50 n n C19 C20 818 doub 51 e n C19 C37 818 sing 52 n n C20 C21 818 sing 53 n n C20 H20 818 sing 54 n n C21 C22 818 sing 55 n n C21 C38 818 sing 56 n n C21 H21 818 sing 57 n n C22 C23 818 sing 58 n n C22 O9 818 doub 59 n n C23 C24 818 sing 60 n n C23 H231 818 sing 61 n n C23 H232 818 sing 62 n n C24 C25 818 sing 63 n n C24 O10 818 sing 64 n n C24 H24 818 sing 65 n n C25 C26 818 sing 66 n n C25 C41 818 sing 67 n n C25 H25 818 sing 68 n n C26 C27 818 sing 69 n n C26 O1 818 sing 70 n n C26 H26 818 sing 71 n n C27 C28 818 doub 72 e n C27 C42 818 sing 73 n n C28 C29 818 sing 74 n n C28 H28 818 sing 75 n n C29 C30 818 sing 76 n n C29 C34 818 sing 77 n n C29 H29 818 sing 78 n n C30 C31 818 sing 79 n n C30 H301 818 sing 80 n n C30 H302 818 sing 81 n n C31 C32 818 sing 82 n n C31 O11 818 sing 83 n n C31 H31 818 sing 84 n n C32 C33 818 sing 85 n n C32 O12 818 sing 86 n n C32 H32 818 sing 87 n n C33 C34 818 sing 88 n n C33 H331 818 sing 89 n n C33 H332 818 sing 90 n n C34 H341 818 sing 91 n n C34 H342 818 sing 92 n n C35 H351 818 sing 93 n n C35 H352 818 sing 94 n n C35 H353 818 sing 95 n n C36 H361 818 sing 96 n n C36 H362 818 sing 97 n n C36 H363 818 sing 98 n n C37 H371 818 sing 99 n n C37 H372 818 sing 100 n n C37 H373 818 sing 101 n n C38 C39 818 sing 102 n n C38 H381 818 sing 103 n n C38 H382 818 sing 104 n n C39 H391 818 sing 105 n n C39 H392 818 sing 106 n n C39 H393 818 sing 107 n n C41 H411 818 sing 108 n n C41 H412 818 sing 109 n n C41 H413 818 sing 110 n n C42 H421 818 sing 111 n n C42 H422 818 sing 112 n n C42 H423 818 sing 113 n n C43 O7 818 sing 114 n n C43 H431 818 sing 115 n n C43 H432 818 sing 116 n n C43 H433 818 sing 117 n n C44 O8 818 sing 118 n n C44 H441 818 sing 119 n n C44 H442 818 sing 120 n n C44 H443 818 sing 121 n n C45 O11 818 sing 122 n n C45 H451 818 sing 123 n n C45 H452 818 sing 124 n n C45 H453 818 sing 125 n n O6 HO6 818 sing 126 n n O10 HO10 818 sing 127 n n O12 HO12 818 sing 128 n n O13 HO13 818 sing 129 n n # _atom_sites.entry_id 1FKD _atom_sites.fract_transf_matrix[1][1] 0.0172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 818 A 1 108 108 818 818 . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 422 422 HOH HOH . C 3 HOH A 22 423 423 HOH HOH . C 3 HOH A 23 424 424 HOH HOH . C 3 HOH A 24 425 425 HOH HOH . C 3 HOH A 25 427 427 HOH HOH . C 3 HOH A 26 429 429 HOH HOH . C 3 HOH A 27 430 430 HOH HOH . C 3 HOH A 28 431 431 HOH HOH . C 3 HOH A 29 433 433 HOH HOH . C 3 HOH A 30 434 434 HOH HOH . C 3 HOH A 31 435 435 HOH HOH . C 3 HOH A 32 436 436 HOH HOH . C 3 HOH A 33 437 437 HOH HOH . C 3 HOH A 34 438 438 HOH HOH . C 3 HOH A 35 441 441 HOH HOH . C 3 HOH A 36 442 442 HOH HOH . C 3 HOH A 37 443 443 HOH HOH . C 3 HOH A 38 444 444 HOH HOH . C 3 HOH A 39 445 445 HOH HOH . C 3 HOH A 40 446 446 HOH HOH . C 3 HOH A 41 447 447 HOH HOH . C 3 HOH A 42 448 448 HOH HOH . C 3 HOH A 43 449 449 HOH HOH . C 3 HOH A 44 450 450 HOH HOH . C 3 HOH A 45 452 452 HOH HOH . C 3 HOH A 46 453 453 HOH HOH . C 3 HOH A 47 455 455 HOH HOH . C 3 HOH A 48 457 457 HOH HOH . C 3 HOH A 49 458 458 HOH HOH . C 3 HOH A 50 459 459 HOH HOH . C 3 HOH A 51 460 460 HOH HOH . C 3 HOH A 52 462 462 HOH HOH . C 3 HOH A 53 464 464 HOH HOH . C 3 HOH A 54 467 467 HOH HOH . C 3 HOH A 55 470 470 HOH HOH . C 3 HOH A 56 472 472 HOH HOH . C 3 HOH A 57 474 474 HOH HOH . C 3 HOH A 58 475 475 HOH HOH . C 3 HOH A 59 476 476 HOH HOH . C 3 HOH A 60 477 477 HOH HOH . C 3 HOH A 61 479 479 HOH HOH . C 3 HOH A 62 480 480 HOH HOH . C 3 HOH A 63 481 481 HOH HOH . C 3 HOH A 64 484 484 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 818 . . . B 2 19.921 29.52 5.992 1 8.39 ? C1 818 108 A 1 HETATM 2 C C2 818 . . . B 2 18.565 28.873 5.818 1 7.44 ? C2 818 108 A 1 HETATM 3 C C3 818 . . . B 2 17.895 28.809 7.228 1 6.54 ? C3 818 108 A 1 HETATM 4 C C4 818 . . . B 2 18.423 27.621 8.046 1 6.85 ? C4 818 108 A 1 HETATM 5 C C5 818 . . . B 2 18.3 26.269 7.359 1 6.59 ? C5 818 108 A 1 HETATM 6 C C6 818 . . . B 2 18.99 26.36 6.007 1 6.67 ? C6 818 108 A 1 HETATM 7 C C8 818 . . . B 2 17.975 27.44 3.951 1 7.3 ? C8 818 108 A 1 HETATM 8 C C9 818 . . . B 2 17.777 26.132 3.272 1 7.38 ? C9 818 108 A 1 HETATM 9 C C10 818 . . . B 2 18.933 25.632 2.312 1 7.44 ? C10 818 108 A 1 HETATM 10 C C11 818 . . . B 2 19.631 26.781 1.647 1 8.14 ? C11 818 108 A 1 HETATM 11 C C12 818 . . . B 2 20.963 26.306 1.058 1 9.58 ? C12 818 108 A 1 HETATM 12 C C13 818 . . . B 2 21.858 25.573 2.148 1 9.45 ? C13 818 108 A 1 HETATM 13 C C14 818 . . . B 2 21.037 24.444 2.845 1 9.76 ? C14 818 108 A 1 HETATM 14 C C15 818 . . . B 2 21.59 23.656 4.035 1 10.74 ? C15 818 108 A 1 HETATM 15 C C16 818 . . . B 2 22.486 24.484 4.967 1 9.91 ? C16 818 108 A 1 HETATM 16 C C17 818 . . . B 2 22.902 23.758 6.277 1 9.97 ? C17 818 108 A 1 HETATM 17 C C18 818 . . . B 2 24.324 23.078 6.017 1 9.99 ? C18 818 108 A 1 HETATM 18 C C19 818 . . . B 2 25.389 24.14 6.199 1 10.28 ? C19 818 108 A 1 HETATM 19 C C20 818 . . . B 2 25.925 24.706 5.094 1 9.35 ? C20 818 108 A 1 HETATM 20 C C21 818 . . . B 2 26.914 25.826 5.144 1 9.75 ? C21 818 108 A 1 HETATM 21 C C22 818 . . . B 2 26.171 27.124 4.853 1 9.45 ? C22 818 108 A 1 HETATM 22 C C23 818 . . . B 2 25.823 27.962 6.062 1 8.84 ? C23 818 108 A 1 HETATM 23 C C24 818 . . . B 2 24.719 28.986 5.754 1 8.57 ? C24 818 108 A 1 HETATM 24 C C25 818 . . . B 2 23.328 28.34 5.722 1 8.1 ? C25 818 108 A 1 HETATM 25 C C26 818 . . . B 2 22.263 29.51 5.424 1 7.31 ? C26 818 108 A 1 HETATM 26 C C27 818 . . . B 2 22.538 30.284 4.15 1 8.72 ? C27 818 108 A 1 HETATM 27 C C28 818 . . . B 2 22.894 31.569 4.381 1 9.67 ? C28 818 108 A 1 HETATM 28 C C29 818 . . . B 2 23.334 32.504 3.283 1 9.8 ? C29 818 108 A 1 HETATM 29 C C30 818 . . . B 2 22.533 33.825 3.401 1 10.62 ? C30 818 108 A 1 HETATM 30 C C31 818 . . . B 2 23.188 34.957 2.623 1 11.77 ? C31 818 108 A 1 HETATM 31 C C32 818 . . . B 2 24.614 35.115 3.065 1 12.48 ? C32 818 108 A 1 HETATM 32 C C33 818 . . . B 2 25.43 33.857 2.752 1 12 ? C33 818 108 A 1 HETATM 33 C C34 818 . . . B 2 24.797 32.814 3.694 1 10.18 ? C34 818 108 A 1 HETATM 34 C C35 818 . . . B 2 18.727 27.324 0.513 1 8.77 ? C35 818 108 A 1 HETATM 35 C C36 818 . . . B 2 21.898 22.681 6.62 1 10.07 ? C36 818 108 A 1 HETATM 36 C C37 818 . . . B 2 25.786 24.59 7.631 1 10.09 ? C37 818 108 A 1 HETATM 37 C C38 818 . . . B 2 27.966 25.605 3.959 1 9.95 ? C38 818 108 A 1 HETATM 38 C C39 818 . . . B 2 29.059 26.638 3.865 1 12.51 ? C39 818 108 A 1 HETATM 39 C C41 818 . . . B 2 22.852 27.654 7.096 1 9.12 ? C41 818 108 A 1 HETATM 40 C C42 818 . . . B 2 22.5 29.547 2.854 1 8.35 ? C42 818 108 A 1 HETATM 41 C C43 818 . . . B 2 24.043 26.1 1.423 1 10.86 ? C43 818 108 A 1 HETATM 42 C C44 818 . . . B 2 21.736 21.433 2.981 1 12.6 ? C44 818 108 A 1 HETATM 43 C C45 818 . . . B 2 21.318 36.229 1.954 1 12.04 ? C45 818 108 A 1 HETATM 44 N N7 818 . . . B 2 18.473 27.564 5.206 1 6.43 ? N7 818 108 A 1 HETATM 45 O O1 818 . . . B 2 20.921 28.823 5.385 1 8.64 ? O1 818 108 A 1 HETATM 46 O O2 818 . . . B 2 20.15 30.48 6.676 1 9.59 ? O2 818 108 A 1 HETATM 47 O O3 818 . . . B 2 17.558 28.465 3.29 1 8.39 ? O3 818 108 A 1 HETATM 48 O O4 818 . . . B 2 16.794 25.415 3.49 1 6.73 ? O4 818 108 A 1 HETATM 49 O O5 818 . . . B 2 19.796 25.091 3.357 1 8 ? O5 818 108 A 1 HETATM 50 O O6 818 . . . B 2 18.544 24.569 1.537 1 7.16 ? O6 818 108 A 1 HETATM 51 O O7 818 . . . B 2 23.08 25.002 1.569 1 10.27 ? O7 818 108 A 1 HETATM 52 O O8 818 . . . B 2 22.456 22.608 3.412 1 12.18 ? O8 818 108 A 1 HETATM 53 O O9 818 . . . B 2 25.844 27.557 3.71 1 8.77 ? O9 818 108 A 1 HETATM 54 O O10 818 . . . B 2 24.854 29.946 6.841 1 9.43 ? O10 818 108 A 1 HETATM 55 O O11 818 . . . B 2 22.427 36.198 2.844 1 12.46 ? O11 818 108 A 1 HETATM 56 O O12 818 . . . B 2 25.103 36.228 2.351 1 13.65 ? O12 818 108 A 1 HETATM 57 O O13 818 . . . B 2 24.492 22.107 7.064 1 10.82 ? O13 818 108 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 57 #