data_1FKW # _model_server_result.job_id xubCKCnSfHtIrIJ6G42iHg _model_server_result.datetime_utc '2024-10-24 04:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":353}' # _entry.id 1FKW # _exptl.entry_id 1FKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.235 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PURINE RIBOSIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.37 _cell.angle_gamma 90 _cell.entry_id 1FKW _cell.length_a 102.84 _cell.length_b 94.18 _cell.length_c 73.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 12 A HIS 15 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc2 A NE2 HIS 14 A HIS 17 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 A NE2 HIS 211 A HIS 214 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 A OE2 GLU 292 A GLU 295 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? # _chem_comp.formula 'C10 H13 N4 O4 1' _chem_comp.formula_weight 253.235 _chem_comp.id PUR _chem_comp.mon_nstd_flag . _chem_comp.name 'PURINE RIBOSIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PUR sing 277 n y N1 C6 PUR doub 278 n y C2 N3 PUR doub 279 n y C2 H2 PUR sing 280 n n N3 C4 PUR sing 281 n y C4 C5 PUR doub 282 n y C4 N9 PUR sing 283 n y C5 C6 PUR sing 284 n y C5 N7 PUR sing 285 n y C6 H6 PUR sing 286 n n N7 C8 PUR doub 287 n y N7 HN7 PUR sing 288 n n C8 N9 PUR sing 289 n y C8 H8 PUR sing 290 n n N9 C1' PUR sing 291 n n C1' C2' PUR sing 292 n n C1' O4' PUR sing 293 n n C1' H1' PUR sing 294 n n C2' O2' PUR sing 295 n n C2' C3' PUR sing 296 n n C2' H2' PUR sing 297 n n O2' HO2' PUR sing 298 n n C3' O3' PUR sing 299 n n C3' C4' PUR sing 300 n n C3' H3' PUR sing 301 n n O3' HO3' PUR sing 302 n n C4' O4' PUR sing 303 n n C4' C5' PUR sing 304 n n C4' H4' PUR sing 305 n n C5' O5' PUR sing 306 n n C5' "H5'1" PUR sing 307 n n C5' "H5'2" PUR sing 308 n n O5' HO5' PUR sing 309 n n # _atom_sites.entry_id 1FKW _atom_sites.fract_transf_matrix[1][1] 0.009724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 400 400 ZN ZN . C 3 PUR A 1 353 353 PUR PUR . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 423 423 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 425 425 HOH HOH . D 4 HOH A 26 426 426 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 429 HOH HOH . D 4 HOH A 30 431 431 HOH HOH . D 4 HOH A 31 432 432 HOH HOH . D 4 HOH A 32 434 434 HOH HOH . D 4 HOH A 33 435 435 HOH HOH . D 4 HOH A 34 436 436 HOH HOH . D 4 HOH A 35 437 437 HOH HOH . D 4 HOH A 36 438 438 HOH HOH . D 4 HOH A 37 439 439 HOH HOH . D 4 HOH A 38 440 440 HOH HOH . D 4 HOH A 39 441 441 HOH HOH . D 4 HOH A 40 442 442 HOH HOH . D 4 HOH A 41 443 443 HOH HOH . D 4 HOH A 42 444 444 HOH HOH . D 4 HOH A 43 445 445 HOH HOH . D 4 HOH A 44 446 446 HOH HOH . D 4 HOH A 45 447 447 HOH HOH . D 4 HOH A 46 448 448 HOH HOH . D 4 HOH A 47 449 449 HOH HOH . D 4 HOH A 48 450 450 HOH HOH . D 4 HOH A 49 451 451 HOH HOH . D 4 HOH A 50 452 452 HOH HOH . D 4 HOH A 51 453 453 HOH HOH . D 4 HOH A 52 454 454 HOH HOH . D 4 HOH A 53 455 455 HOH HOH . D 4 HOH A 54 456 456 HOH HOH . D 4 HOH A 55 457 457 HOH HOH . D 4 HOH A 56 458 458 HOH HOH . D 4 HOH A 57 459 459 HOH HOH . D 4 HOH A 58 460 460 HOH HOH . D 4 HOH A 59 461 461 HOH HOH . D 4 HOH A 60 462 462 HOH HOH . D 4 HOH A 61 463 463 HOH HOH . D 4 HOH A 62 464 464 HOH HOH . D 4 HOH A 63 465 465 HOH HOH . D 4 HOH A 64 466 466 HOH HOH . D 4 HOH A 65 467 467 HOH HOH . D 4 HOH A 66 468 468 HOH HOH . D 4 HOH A 67 469 469 HOH HOH . D 4 HOH A 68 470 470 HOH HOH . D 4 HOH A 69 471 471 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PUR . . . C 3 1.417 20.582 39.043 1 7.64 ? N1 PUR 353 A 1 HETATM 2 C C2 PUR . . . C 3 2.414 20.281 39.873 1 6.46 ? C2 PUR 353 A 1 HETATM 3 N N3 PUR . . . C 3 3.598 19.837 39.445 1 5.73 ? N3 PUR 353 A 1 HETATM 4 C C4 PUR . . . C 3 3.815 19.669 38.114 1 3.95 ? C4 PUR 353 A 1 HETATM 5 C C5 PUR . . . C 3 2.843 19.951 37.215 1 5.87 ? C5 PUR 353 A 1 HETATM 6 C C6 PUR . . . C 3 1.572 20.433 37.671 1 3.47 ? C6 PUR 353 A 1 HETATM 7 N N7 PUR . . . C 3 3.333 19.699 35.988 1 5.29 ? N7 PUR 353 A 1 HETATM 8 C C8 PUR . . . C 3 4.584 19.263 36.124 1 9.17 ? C8 PUR 353 A 1 HETATM 9 N N9 PUR . . . C 3 4.896 19.238 37.414 1 7.49 ? N9 PUR 353 A 1 HETATM 10 C C1' PUR . . . C 3 6.119 18.74 37.956 1 9.35 ? C1' PUR 353 A 1 HETATM 11 C C2' PUR . . . C 3 6.524 17.522 37.133 1 9.79 ? C2' PUR 353 A 1 HETATM 12 O O2' PUR . . . C 3 6.725 16.4 37.996 1 15.76 ? O2' PUR 353 A 1 HETATM 13 C C3' PUR . . . C 3 7.791 17.835 36.281 1 12.21 ? C3' PUR 353 A 1 HETATM 14 O O3' PUR . . . C 3 8.717 16.743 36.3 1 13.03 ? O3' PUR 353 A 1 HETATM 15 C C4' PUR . . . C 3 8.237 19.017 37.267 1 9.97 ? C4' PUR 353 A 1 HETATM 16 O O4' PUR . . . C 3 7.141 19.688 37.768 1 13.57 ? O4' PUR 353 A 1 HETATM 17 C C5' PUR . . . C 3 9.207 20.029 36.595 1 7.66 ? C5' PUR 353 A 1 HETATM 18 O O5' PUR . . . C 3 8.69 20.575 35.359 1 8.01 ? O5' PUR 353 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #