data_1FM7 # _model_server_result.job_id JneTwg8RcYRgC99dDByMhg _model_server_result.datetime_utc '2024-11-13 20:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 1FM7 # _exptl.entry_id 1FM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1FM7 _cell.length_a 90.084 _cell.length_b 90.084 _cell.length_c 352.849 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C15 H12 O4' _chem_comp.formula_weight 256.253 _chem_comp.id DFV _chem_comp.mon_nstd_flag . _chem_comp.name 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-DEOXYFLAVANONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DFV doub 83 n y C1 C6 DFV sing 84 n y C1 O3 DFV sing 85 n n C2 C3 DFV sing 86 n y C2 H2 DFV sing 87 n n C3 C4 DFV doub 88 n y C3 H3 DFV sing 89 n n C4 C5 DFV sing 90 n y C4 C7 DFV sing 91 n n C5 C6 DFV doub 92 n y C5 O1 DFV sing 93 n n C6 H6 DFV sing 94 n n C7 C8 DFV sing 95 n n C7 O2 DFV doub 96 n n C8 C9 DFV sing 97 n n C8 H81 DFV sing 98 n n C8 H82 DFV sing 99 n n C9 O1 DFV sing 100 n n C9 C10 DFV sing 101 n n C9 H9 DFV sing 102 n n C10 C11 DFV doub 103 n y C10 C15 DFV sing 104 n y C11 C12 DFV sing 105 n y C11 H11 DFV sing 106 n n C12 C13 DFV doub 107 n y C12 H12 DFV sing 108 n n C13 C14 DFV sing 109 n y C13 O4 DFV sing 110 n n C14 C15 DFV doub 111 n y C14 H14 DFV sing 112 n n C15 H15 DFV sing 113 n n O3 HO3 DFV sing 114 n n O4 HO4 DFV sing 115 n n # _atom_sites.entry_id 1FM7 _atom_sites.fract_transf_matrix[1][1] 0.011101 _atom_sites.fract_transf_matrix[1][2] 0.006409 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 602 602 SO4 SUL . D 2 SO4 A 1 604 604 SO4 SUL . E 3 DFV A 1 501 501 DFV DFV . F 2 SO4 B 1 601 601 SO4 SUL . G 3 DFV B 1 502 502 DFV DFV . H 4 HOH A 1 605 3 HOH HOH . H 4 HOH A 2 606 5 HOH HOH . H 4 HOH A 3 607 7 HOH HOH . H 4 HOH A 4 608 8 HOH HOH . H 4 HOH A 5 609 9 HOH HOH . H 4 HOH A 6 610 10 HOH HOH . H 4 HOH A 7 611 13 HOH HOH . H 4 HOH A 8 612 14 HOH HOH . H 4 HOH A 9 613 19 HOH HOH . H 4 HOH A 10 614 24 HOH HOH . H 4 HOH A 11 615 31 HOH HOH . H 4 HOH A 12 616 32 HOH HOH . H 4 HOH A 13 617 34 HOH HOH . H 4 HOH A 14 618 36 HOH HOH . H 4 HOH A 15 619 37 HOH HOH . H 4 HOH A 16 620 39 HOH HOH . H 4 HOH A 17 621 41 HOH HOH . H 4 HOH A 18 622 42 HOH HOH . H 4 HOH A 19 623 44 HOH HOH . H 4 HOH A 20 624 46 HOH HOH . H 4 HOH A 21 625 47 HOH HOH . H 4 HOH A 22 626 48 HOH HOH . H 4 HOH A 23 627 50 HOH HOH . H 4 HOH A 24 628 51 HOH HOH . H 4 HOH A 25 629 52 HOH HOH . H 4 HOH A 26 630 54 HOH HOH . H 4 HOH A 27 631 55 HOH HOH . H 4 HOH A 28 632 56 HOH HOH . H 4 HOH A 29 633 57 HOH HOH . H 4 HOH A 30 634 59 HOH HOH . H 4 HOH A 31 635 60 HOH HOH . H 4 HOH A 32 636 61 HOH HOH . H 4 HOH A 33 637 64 HOH HOH . H 4 HOH A 34 638 65 HOH HOH . H 4 HOH A 35 639 66 HOH HOH . H 4 HOH A 36 640 68 HOH HOH . H 4 HOH A 37 641 71 HOH HOH . H 4 HOH A 38 642 72 HOH HOH . H 4 HOH A 39 643 74 HOH HOH . H 4 HOH A 40 644 75 HOH HOH . H 4 HOH A 41 645 77 HOH HOH . H 4 HOH A 42 646 79 HOH HOH . H 4 HOH A 43 647 82 HOH HOH . H 4 HOH A 44 648 83 HOH HOH . H 4 HOH A 45 649 86 HOH HOH . H 4 HOH A 46 650 87 HOH HOH . H 4 HOH A 47 651 89 HOH HOH . H 4 HOH A 48 652 91 HOH HOH . H 4 HOH A 49 653 93 HOH HOH . H 4 HOH A 50 654 96 HOH HOH . H 4 HOH A 51 655 97 HOH HOH . H 4 HOH A 52 656 98 HOH HOH . H 4 HOH A 53 657 101 HOH HOH . H 4 HOH A 54 658 106 HOH HOH . H 4 HOH A 55 659 107 HOH HOH . H 4 HOH A 56 660 109 HOH HOH . H 4 HOH A 57 661 110 HOH HOH . H 4 HOH A 58 662 111 HOH HOH . H 4 HOH A 59 663 112 HOH HOH . H 4 HOH A 60 664 113 HOH HOH . H 4 HOH A 61 665 115 HOH HOH . H 4 HOH A 62 666 116 HOH HOH . H 4 HOH A 63 667 117 HOH HOH . H 4 HOH A 64 668 119 HOH HOH . H 4 HOH A 65 669 123 HOH HOH . H 4 HOH A 66 670 124 HOH HOH . H 4 HOH A 67 671 125 HOH HOH . H 4 HOH A 68 672 127 HOH HOH . H 4 HOH A 69 673 128 HOH HOH . H 4 HOH A 70 674 129 HOH HOH . H 4 HOH A 71 675 134 HOH HOH . H 4 HOH A 72 676 139 HOH HOH . H 4 HOH A 73 677 141 HOH HOH . H 4 HOH A 74 678 142 HOH HOH . H 4 HOH A 75 679 143 HOH HOH . H 4 HOH A 76 680 144 HOH HOH . H 4 HOH A 77 681 145 HOH HOH . H 4 HOH A 78 682 148 HOH HOH . H 4 HOH A 79 683 149 HOH HOH . H 4 HOH A 80 684 154 HOH HOH . H 4 HOH A 81 685 155 HOH HOH . H 4 HOH A 82 686 156 HOH HOH . H 4 HOH A 83 687 158 HOH HOH . H 4 HOH A 84 688 161 HOH HOH . H 4 HOH A 85 689 162 HOH HOH . H 4 HOH A 86 690 163 HOH HOH . H 4 HOH A 87 691 164 HOH HOH . H 4 HOH A 88 692 165 HOH HOH . H 4 HOH A 89 693 166 HOH HOH . H 4 HOH A 90 694 170 HOH HOH . H 4 HOH A 91 695 177 HOH HOH . H 4 HOH A 92 696 179 HOH HOH . H 4 HOH A 93 697 181 HOH HOH . H 4 HOH A 94 698 185 HOH HOH . H 4 HOH A 95 699 186 HOH HOH . H 4 HOH A 96 700 189 HOH HOH . I 4 HOH B 1 602 1 HOH HOH . I 4 HOH B 2 603 2 HOH HOH . I 4 HOH B 3 604 4 HOH HOH . I 4 HOH B 4 605 6 HOH HOH . I 4 HOH B 5 606 11 HOH HOH . I 4 HOH B 6 607 12 HOH HOH . I 4 HOH B 7 608 15 HOH HOH . I 4 HOH B 8 609 16 HOH HOH . I 4 HOH B 9 610 17 HOH HOH . I 4 HOH B 10 611 18 HOH HOH . I 4 HOH B 11 612 20 HOH HOH . I 4 HOH B 12 613 21 HOH HOH . I 4 HOH B 13 614 22 HOH HOH . I 4 HOH B 14 615 23 HOH HOH . I 4 HOH B 15 616 25 HOH HOH . I 4 HOH B 16 617 26 HOH HOH . I 4 HOH B 17 618 27 HOH HOH . I 4 HOH B 18 619 28 HOH HOH . I 4 HOH B 19 620 29 HOH HOH . I 4 HOH B 20 621 30 HOH HOH . I 4 HOH B 21 622 33 HOH HOH . I 4 HOH B 22 623 35 HOH HOH . I 4 HOH B 23 624 38 HOH HOH . I 4 HOH B 24 625 40 HOH HOH . I 4 HOH B 25 626 43 HOH HOH . I 4 HOH B 26 627 45 HOH HOH . I 4 HOH B 27 628 49 HOH HOH . I 4 HOH B 28 629 53 HOH HOH . I 4 HOH B 29 630 58 HOH HOH . I 4 HOH B 30 631 62 HOH HOH . I 4 HOH B 31 632 63 HOH HOH . I 4 HOH B 32 633 67 HOH HOH . I 4 HOH B 33 634 69 HOH HOH . I 4 HOH B 34 635 70 HOH HOH . I 4 HOH B 35 636 73 HOH HOH . I 4 HOH B 36 637 76 HOH HOH . I 4 HOH B 37 638 78 HOH HOH . I 4 HOH B 38 639 80 HOH HOH . I 4 HOH B 39 640 81 HOH HOH . I 4 HOH B 40 641 84 HOH HOH . I 4 HOH B 41 642 85 HOH HOH . I 4 HOH B 42 643 88 HOH HOH . I 4 HOH B 43 644 90 HOH HOH . I 4 HOH B 44 645 92 HOH HOH . I 4 HOH B 45 646 94 HOH HOH . I 4 HOH B 46 647 95 HOH HOH . I 4 HOH B 47 648 99 HOH HOH . I 4 HOH B 48 649 100 HOH HOH . I 4 HOH B 49 650 102 HOH HOH . I 4 HOH B 50 651 103 HOH HOH . I 4 HOH B 51 652 104 HOH HOH . I 4 HOH B 52 653 105 HOH HOH . I 4 HOH B 53 654 108 HOH HOH . I 4 HOH B 54 655 114 HOH HOH . I 4 HOH B 55 656 118 HOH HOH . I 4 HOH B 56 657 120 HOH HOH . I 4 HOH B 57 658 121 HOH HOH . I 4 HOH B 58 659 122 HOH HOH . I 4 HOH B 59 660 126 HOH HOH . I 4 HOH B 60 661 130 HOH HOH . I 4 HOH B 61 662 131 HOH HOH . I 4 HOH B 62 663 132 HOH HOH . I 4 HOH B 63 664 133 HOH HOH . I 4 HOH B 64 665 135 HOH HOH . I 4 HOH B 65 666 136 HOH HOH . I 4 HOH B 66 667 137 HOH HOH . I 4 HOH B 67 668 138 HOH HOH . I 4 HOH B 68 669 140 HOH HOH . I 4 HOH B 69 670 146 HOH HOH . I 4 HOH B 70 671 147 HOH HOH . I 4 HOH B 71 672 150 HOH HOH . I 4 HOH B 72 673 151 HOH HOH . I 4 HOH B 73 674 152 HOH HOH . I 4 HOH B 74 675 153 HOH HOH . I 4 HOH B 75 676 157 HOH HOH . I 4 HOH B 76 677 159 HOH HOH . I 4 HOH B 77 678 160 HOH HOH . I 4 HOH B 78 679 167 HOH HOH . I 4 HOH B 79 680 168 HOH HOH . I 4 HOH B 80 681 169 HOH HOH . I 4 HOH B 81 682 171 HOH HOH . I 4 HOH B 82 683 172 HOH HOH . I 4 HOH B 83 684 173 HOH HOH . I 4 HOH B 84 685 174 HOH HOH . I 4 HOH B 85 686 175 HOH HOH . I 4 HOH B 86 687 176 HOH HOH . I 4 HOH B 87 688 178 HOH HOH . I 4 HOH B 88 689 180 HOH HOH . I 4 HOH B 89 690 182 HOH HOH . I 4 HOH B 90 691 183 HOH HOH . I 4 HOH B 91 692 184 HOH HOH . I 4 HOH B 92 693 187 HOH HOH . I 4 HOH B 93 694 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DFV . . . G 3 33.697 -8.306 58.154 1 100.84 ? C1 DFV 502 B 1 HETATM 2 C C2 DFV . . . G 3 32.586 -9.021 57.76 1 100.99 ? C2 DFV 502 B 1 HETATM 3 C C3 DFV . . . G 3 32.209 -10.369 58.404 1 101.74 ? C3 DFV 502 B 1 HETATM 4 C C4 DFV . . . G 3 33.055 -10.861 59.402 1 102.43 ? C4 DFV 502 B 1 HETATM 5 C C5 DFV . . . G 3 34.337 -10.066 59.886 1 101.85 ? C5 DFV 502 B 1 HETATM 6 C C6 DFV . . . G 3 34.613 -8.869 59.264 1 101.2 ? C6 DFV 502 B 1 HETATM 7 C C7 DFV . . . G 3 32.768 -12.232 60.14 1 102.68 ? C7 DFV 502 B 1 HETATM 8 C C8 DFV . . . G 3 33.799 -12.625 61.219 1 102.45 ? C8 DFV 502 B 1 HETATM 9 C C9 DFV . . . G 3 34.512 -11.432 61.834 1 102.24 ? C9 DFV 502 B 1 HETATM 10 O O1 DFV . . . G 3 35.144 -10.582 60.881 1 101.78 ? O1 DFV 502 B 1 HETATM 11 C C10 DFV . . . G 3 35.507 -11.918 62.873 1 102.33 ? C10 DFV 502 B 1 HETATM 12 C C11 DFV . . . G 3 36.692 -12.604 62.541 1 102.05 ? C11 DFV 502 B 1 HETATM 13 C C12 DFV . . . G 3 37.646 -13.068 63.668 1 101.36 ? C12 DFV 502 B 1 HETATM 14 C C13 DFV . . . G 3 37.352 -12.822 64.997 1 100.97 ? C13 DFV 502 B 1 HETATM 15 C C14 DFV . . . G 3 36.052 -12.07 65.346 1 101.3 ? C14 DFV 502 B 1 HETATM 16 C C15 DFV . . . G 3 35.191 -11.649 64.361 1 101.59 ? C15 DFV 502 B 1 HETATM 17 O O2 DFV . . . G 3 31.822 -12.942 59.879 1 103.44 ? O2 DFV 502 B 1 HETATM 18 O O3 DFV . . . G 3 33.981 -7.138 57.571 1 100.1 ? O3 DFV 502 B 1 HETATM 19 O O4 DFV . . . G 3 38.177 -13.225 65.976 1 109.7 ? O4 DFV 502 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 19 #