data_1FM8
#
_model_server_result.job_id            97_8Bgr8suzRoHFYzLhazA 
_model_server_result.datetime_utc      '2024-11-30 06:22:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1fm8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    1FM8 
#
_exptl.entry_id    1FM8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.254 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-HYDROXY-2-PHENYL-CHROMAN-4-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1FM8 
_cell.length_a            89.848 
_cell.length_b            89.848 
_cell.length_c            352.956 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1FM8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
A,B,C,D,E,F,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H12 O3' 
_chem_comp.formula_weight    240.254 
_chem_comp.id                DDC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-HYDROXY-2-PHENYL-CHROMAN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "5,4'-DIDEOXYFLAVANONE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DDC doub 83 n y 
C1 C6 DDC sing 84 n y 
C1 O2 DDC sing 85 n n 
C2 C3 DDC sing 86 n y 
C2 H2 DDC sing 87 n n 
C3 C4 DDC doub 88 n y 
C3 H3 DDC sing 89 n n 
C4 C5 DDC sing 90 n y 
C4 C7 DDC sing 91 n n 
C5 C6 DDC doub 92 n y 
C5 O1 DDC sing 93 n n 
C6 H6 DDC sing 94 n n 
C7 C8 DDC sing 95 n n 
C7 O3 DDC doub 96 n n 
C8 C9 DDC sing 97 n n 
C8 H81 DDC sing 98 n n 
C8 H82 DDC sing 99 n n 
C9 O1 DDC sing 100 n n 
C9 C10 DDC sing 101 n n 
C9 H9 DDC sing 102 n n 
O2 HO2 DDC sing 103 n n 
C10 C11 DDC doub 104 n y 
C10 C15 DDC sing 105 n y 
C11 C12 DDC sing 106 n y 
C11 H11 DDC sing 107 n n 
C12 C13 DDC doub 108 n y 
C12 H12 DDC sing 109 n n 
C13 C14 DDC sing 110 n y 
C13 H13 DDC sing 111 n n 
C14 C15 DDC doub 112 n y 
C14 H14 DDC sing 113 n n 
C15 H15 DDC sing 114 n n 
#
_atom_sites.entry_id                     1FM8 
_atom_sites.fract_transf_matrix[1][1]    0.01113 
_atom_sites.fract_transf_matrix[1][2]    0.006426 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 602 602 SO4 SUL . 
D 3 DDC A 1 501 501 DDC DDC . 
E 2 SO4 B 1 601 601 SO4 SUL . 
F 4 HOH A 1 603 1 HOH HOH . 
F 4 HOH A 2 604 3 HOH HOH . 
F 4 HOH A 3 605 5 HOH HOH . 
F 4 HOH A 4 606 6 HOH HOH . 
F 4 HOH A 5 607 8 HOH HOH . 
F 4 HOH A 6 608 9 HOH HOH . 
F 4 HOH A 7 609 13 HOH HOH . 
F 4 HOH A 8 610 14 HOH HOH . 
F 4 HOH A 9 611 18 HOH HOH . 
F 4 HOH A 10 612 20 HOH HOH . 
F 4 HOH A 11 613 23 HOH HOH . 
F 4 HOH A 12 614 27 HOH HOH . 
F 4 HOH A 13 615 28 HOH HOH . 
F 4 HOH A 14 616 32 HOH HOH . 
F 4 HOH A 15 617 33 HOH HOH . 
F 4 HOH A 16 618 34 HOH HOH . 
F 4 HOH A 17 619 35 HOH HOH . 
F 4 HOH A 18 620 37 HOH HOH . 
F 4 HOH A 19 621 40 HOH HOH . 
F 4 HOH A 20 622 44 HOH HOH . 
F 4 HOH A 21 623 45 HOH HOH . 
F 4 HOH A 22 624 46 HOH HOH . 
F 4 HOH A 23 625 47 HOH HOH . 
F 4 HOH A 24 626 49 HOH HOH . 
F 4 HOH A 25 627 50 HOH HOH . 
F 4 HOH A 26 628 52 HOH HOH . 
F 4 HOH A 27 629 53 HOH HOH . 
F 4 HOH A 28 630 59 HOH HOH . 
F 4 HOH A 29 631 60 HOH HOH . 
F 4 HOH A 30 632 63 HOH HOH . 
F 4 HOH A 31 633 67 HOH HOH . 
F 4 HOH A 32 634 68 HOH HOH . 
F 4 HOH A 33 635 74 HOH HOH . 
F 4 HOH A 34 636 75 HOH HOH . 
F 4 HOH A 35 637 76 HOH HOH . 
F 4 HOH A 36 638 79 HOH HOH . 
F 4 HOH A 37 639 81 HOH HOH . 
F 4 HOH A 38 640 82 HOH HOH . 
F 4 HOH A 39 641 83 HOH HOH . 
F 4 HOH A 40 642 87 HOH HOH . 
F 4 HOH A 41 643 91 HOH HOH . 
F 4 HOH A 42 644 92 HOH HOH . 
F 4 HOH A 43 645 102 HOH HOH . 
F 4 HOH A 44 646 104 HOH HOH . 
F 4 HOH A 45 647 105 HOH HOH . 
F 4 HOH A 46 648 107 HOH HOH . 
F 4 HOH A 47 649 110 HOH HOH . 
F 4 HOH A 48 650 115 HOH HOH . 
F 4 HOH A 49 651 119 HOH HOH . 
F 4 HOH A 50 652 120 HOH HOH . 
F 4 HOH A 51 653 122 HOH HOH . 
F 4 HOH A 52 654 124 HOH HOH . 
F 4 HOH A 53 655 126 HOH HOH . 
F 4 HOH A 54 656 127 HOH HOH . 
F 4 HOH A 55 657 128 HOH HOH . 
F 4 HOH A 56 658 131 HOH HOH . 
F 4 HOH A 57 659 132 HOH HOH . 
F 4 HOH A 58 660 134 HOH HOH . 
F 4 HOH A 59 661 138 HOH HOH . 
F 4 HOH A 60 662 139 HOH HOH . 
F 4 HOH A 61 663 141 HOH HOH . 
F 4 HOH A 62 664 142 HOH HOH . 
G 4 HOH B 1 602 2 HOH HOH . 
G 4 HOH B 2 603 4 HOH HOH . 
G 4 HOH B 3 604 7 HOH HOH . 
G 4 HOH B 4 605 10 HOH HOH . 
G 4 HOH B 5 606 11 HOH HOH . 
G 4 HOH B 6 607 12 HOH HOH . 
G 4 HOH B 7 608 15 HOH HOH . 
G 4 HOH B 8 609 16 HOH HOH . 
G 4 HOH B 9 610 17 HOH HOH . 
G 4 HOH B 10 611 19 HOH HOH . 
G 4 HOH B 11 612 21 HOH HOH . 
G 4 HOH B 12 613 22 HOH HOH . 
G 4 HOH B 13 614 24 HOH HOH . 
G 4 HOH B 14 615 25 HOH HOH . 
G 4 HOH B 15 616 26 HOH HOH . 
G 4 HOH B 16 617 29 HOH HOH . 
G 4 HOH B 17 618 31 HOH HOH . 
G 4 HOH B 18 619 36 HOH HOH . 
G 4 HOH B 19 620 38 HOH HOH . 
G 4 HOH B 20 621 39 HOH HOH . 
G 4 HOH B 21 622 42 HOH HOH . 
G 4 HOH B 22 623 43 HOH HOH . 
G 4 HOH B 23 624 48 HOH HOH . 
G 4 HOH B 24 625 51 HOH HOH . 
G 4 HOH B 25 626 54 HOH HOH . 
G 4 HOH B 26 627 55 HOH HOH . 
G 4 HOH B 27 628 56 HOH HOH . 
G 4 HOH B 28 629 58 HOH HOH . 
G 4 HOH B 29 630 62 HOH HOH . 
G 4 HOH B 30 631 64 HOH HOH . 
G 4 HOH B 31 632 65 HOH HOH . 
G 4 HOH B 32 633 66 HOH HOH . 
G 4 HOH B 33 634 69 HOH HOH . 
G 4 HOH B 34 635 70 HOH HOH . 
G 4 HOH B 35 636 71 HOH HOH . 
G 4 HOH B 36 637 72 HOH HOH . 
G 4 HOH B 37 638 73 HOH HOH . 
G 4 HOH B 38 639 77 HOH HOH . 
G 4 HOH B 39 640 78 HOH HOH . 
G 4 HOH B 40 641 84 HOH HOH . 
G 4 HOH B 41 642 85 HOH HOH . 
G 4 HOH B 42 643 86 HOH HOH . 
G 4 HOH B 43 644 88 HOH HOH . 
G 4 HOH B 44 645 89 HOH HOH . 
G 4 HOH B 45 646 93 HOH HOH . 
G 4 HOH B 46 647 94 HOH HOH . 
G 4 HOH B 47 648 95 HOH HOH . 
G 4 HOH B 48 649 96 HOH HOH . 
G 4 HOH B 49 650 97 HOH HOH . 
G 4 HOH B 50 651 98 HOH HOH . 
G 4 HOH B 51 652 100 HOH HOH . 
G 4 HOH B 52 653 101 HOH HOH . 
G 4 HOH B 53 654 103 HOH HOH . 
G 4 HOH B 54 655 106 HOH HOH . 
G 4 HOH B 55 656 108 HOH HOH . 
G 4 HOH B 56 657 109 HOH HOH . 
G 4 HOH B 57 658 111 HOH HOH . 
G 4 HOH B 58 659 113 HOH HOH . 
G 4 HOH B 59 660 114 HOH HOH . 
G 4 HOH B 60 661 116 HOH HOH . 
G 4 HOH B 61 662 117 HOH HOH . 
G 4 HOH B 62 663 118 HOH HOH . 
G 4 HOH B 63 664 121 HOH HOH . 
G 4 HOH B 64 665 123 HOH HOH . 
G 4 HOH B 65 666 125 HOH HOH . 
G 4 HOH B 66 667 129 HOH HOH . 
G 4 HOH B 67 668 130 HOH HOH . 
G 4 HOH B 68 669 133 HOH HOH . 
G 4 HOH B 69 670 135 HOH HOH . 
G 4 HOH B 70 671 136 HOH HOH . 
G 4 HOH B 71 672 137 HOH HOH . 
G 4 HOH B 72 673 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DDC . . . D 3 27.783 18.848 35.901 1 75.8 ? C1 DDC 501 A 1 
HETATM 2 C C2 DDC . . . D 3 26.373 18.85 36.197 1 76.54 ? C2 DDC 501 A 1 
HETATM 3 C C3 DDC . . . D 3 25.497 19.816 35.584 1 78.75 ? C3 DDC 501 A 1 
HETATM 4 C C4 DDC . . . D 3 26.042 20.796 34.668 1 78.75 ? C4 DDC 501 A 1 
HETATM 5 C C5 DDC . . . D 3 27.455 20.821 34.342 1 78.23 ? C5 DDC 501 A 1 
HETATM 6 C C6 DDC . . . D 3 28.31 19.837 34.975 1 76.76 ? C6 DDC 501 A 1 
HETATM 7 C C7 DDC . . . D 3 25.127 21.831 34.006 1 78.93 ? C7 DDC 501 A 1 
HETATM 8 C C8 DDC . . . D 3 25.83 22.812 33.078 1 78.89 ? C8 DDC 501 A 1 
HETATM 9 C C9 DDC . . . D 3 27.052 22.167 32.405 1 79.48 ? C9 DDC 501 A 1 
HETATM 10 O O1 DDC . . . D 3 27.973 21.751 33.449 1 79.82 ? O1 DDC 501 A 1 
HETATM 11 O O2 DDC . . . D 3 28.595 17.934 36.481 1 73.91 ? O2 DDC 501 A 1 
HETATM 12 C C10 DDC . . . D 3 27.763 23.146 31.471 1 79.25 ? C10 DDC 501 A 1 
HETATM 13 C C11 DDC . . . D 3 27.327 24.525 31.291 1 79.02 ? C11 DDC 501 A 1 
HETATM 14 C C12 DDC . . . D 3 28.042 25.406 30.391 1 78.12 ? C12 DDC 501 A 1 
HETATM 15 C C13 DDC . . . D 3 29.195 24.932 29.666 1 77.85 ? C13 DDC 501 A 1 
HETATM 16 C C14 DDC . . . D 3 29.636 23.57 29.834 1 78.84 ? C14 DDC 501 A 1 
HETATM 17 C C15 DDC . . . D 3 28.926 22.687 30.735 1 79.33 ? C15 DDC 501 A 1 
HETATM 18 O O3 DDC . . . D 3 23.936 21.882 34.208 1 80.41 ? O3 DDC 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           18 
#