data_1FML # _model_server_result.job_id SZKqU3vZyAa_JUEkiV7tkg _model_server_result.datetime_utc '2024-11-22 16:54:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1FML # _exptl.entry_id 1FML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.29 _cell.angle_gamma 90 _cell.entry_id 1FML _cell.length_a 82.053 _cell.length_b 66.612 _cell.length_c 84.904 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FML _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 121 A ASN 121 1_555 C CA CA . A CA 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc2 A OD1 ASP 122 A ASP 122 1_555 C CA CA . A CA 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 B OD1 ASN 121 B ASN 121 1_555 F CA CA . B CA 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 B OD2 ASP 122 B ASP 122 1_555 F CA CA . B CA 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.261 ? metalc ? metalc5 B OD1 ASP 122 B ASP 122 1_555 F CA CA . B CA 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 1FML _atom_sites.fract_transf_matrix[1][1] 0.012187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004749 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 450 450 CA CA . D 3 A3P A 1 400 400 A3P A3P . E 4 RTL A 1 401 401 RTL RTL . F 2 CA B 1 550 550 CA CA . G 3 A3P B 1 500 500 A3P A3P . H 4 RTL B 1 501 501 RTL RTL . I 5 HOH A 1 451 2 HOH TIP . I 5 HOH A 2 452 3 HOH TIP . I 5 HOH A 3 453 4 HOH TIP . I 5 HOH A 4 454 5 HOH TIP . I 5 HOH A 5 455 10 HOH TIP . I 5 HOH A 6 456 15 HOH TIP . I 5 HOH A 7 457 16 HOH TIP . I 5 HOH A 8 458 17 HOH TIP . I 5 HOH A 9 459 18 HOH TIP . I 5 HOH A 10 460 19 HOH TIP . I 5 HOH A 11 461 20 HOH TIP . I 5 HOH A 12 462 22 HOH TIP . I 5 HOH A 13 463 24 HOH TIP . I 5 HOH A 14 464 25 HOH TIP . I 5 HOH A 15 465 26 HOH TIP . I 5 HOH A 16 466 28 HOH TIP . I 5 HOH A 17 467 29 HOH TIP . I 5 HOH A 18 468 32 HOH TIP . I 5 HOH A 19 469 36 HOH TIP . I 5 HOH A 20 470 37 HOH TIP . I 5 HOH A 21 471 39 HOH TIP . I 5 HOH A 22 472 40 HOH TIP . I 5 HOH A 23 473 42 HOH TIP . I 5 HOH A 24 474 44 HOH TIP . I 5 HOH A 25 475 46 HOH TIP . I 5 HOH A 26 476 48 HOH TIP . I 5 HOH A 27 477 49 HOH TIP . I 5 HOH A 28 478 52 HOH TIP . I 5 HOH A 29 479 53 HOH TIP . I 5 HOH A 30 480 54 HOH TIP . I 5 HOH A 31 481 55 HOH TIP . I 5 HOH A 32 482 56 HOH TIP . I 5 HOH A 33 483 57 HOH TIP . I 5 HOH A 34 484 59 HOH TIP . I 5 HOH A 35 485 60 HOH TIP . I 5 HOH A 36 486 61 HOH TIP . I 5 HOH A 37 487 64 HOH TIP . I 5 HOH A 38 488 67 HOH TIP . I 5 HOH A 39 489 68 HOH TIP . I 5 HOH A 40 490 69 HOH TIP . I 5 HOH A 41 491 70 HOH TIP . I 5 HOH A 42 492 82 HOH TIP . I 5 HOH A 43 493 85 HOH TIP . I 5 HOH A 44 494 86 HOH TIP . I 5 HOH A 45 495 89 HOH TIP . I 5 HOH A 46 496 91 HOH TIP . J 5 HOH B 1 551 1 HOH TIP . J 5 HOH B 2 552 6 HOH TIP . J 5 HOH B 3 553 7 HOH TIP . J 5 HOH B 4 554 8 HOH TIP . J 5 HOH B 5 555 9 HOH TIP . J 5 HOH B 6 556 11 HOH TIP . J 5 HOH B 7 557 12 HOH TIP . J 5 HOH B 8 558 13 HOH TIP . J 5 HOH B 9 559 14 HOH TIP . J 5 HOH B 10 560 21 HOH TIP . J 5 HOH B 11 561 23 HOH TIP . J 5 HOH B 12 562 27 HOH TIP . J 5 HOH B 13 563 30 HOH TIP . J 5 HOH B 14 564 31 HOH TIP . J 5 HOH B 15 565 33 HOH TIP . J 5 HOH B 16 566 34 HOH TIP . J 5 HOH B 17 567 35 HOH TIP . J 5 HOH B 18 568 38 HOH TIP . J 5 HOH B 19 569 41 HOH TIP . J 5 HOH B 20 570 43 HOH TIP . J 5 HOH B 21 571 45 HOH TIP . J 5 HOH B 22 572 47 HOH TIP . J 5 HOH B 23 573 50 HOH TIP . J 5 HOH B 24 574 51 HOH TIP . J 5 HOH B 25 575 58 HOH TIP . J 5 HOH B 26 576 62 HOH TIP . J 5 HOH B 27 577 63 HOH TIP . J 5 HOH B 28 578 65 HOH TIP . J 5 HOH B 29 579 66 HOH TIP . J 5 HOH B 30 580 71 HOH TIP . J 5 HOH B 31 581 72 HOH TIP . J 5 HOH B 32 582 73 HOH TIP . J 5 HOH B 33 583 74 HOH TIP . J 5 HOH B 34 584 75 HOH TIP . J 5 HOH B 35 585 76 HOH TIP . J 5 HOH B 36 586 77 HOH TIP . J 5 HOH B 37 587 78 HOH TIP . J 5 HOH B 38 588 79 HOH TIP . J 5 HOH B 39 589 80 HOH TIP . J 5 HOH B 40 590 81 HOH TIP . J 5 HOH B 41 591 83 HOH TIP . J 5 HOH B 42 592 84 HOH TIP . J 5 HOH B 43 593 87 HOH TIP . J 5 HOH B 44 594 88 HOH TIP . J 5 HOH B 45 595 90 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . D 3 12.577 8.288 38.307 1 6.54 ? P1 A3P 400 A 1 HETATM 2 O O1P A3P . . . D 3 13.859 7.56 38.033 1 6.54 ? O1P A3P 400 A 1 HETATM 3 O O2P A3P . . . D 3 12.637 9.003 39.614 1 6.54 ? O2P A3P 400 A 1 HETATM 4 O O3P A3P . . . D 3 12.287 9.243 37.172 1 6.54 ? O3P A3P 400 A 1 HETATM 5 P P2 A3P . . . D 3 9.491 1.412 38.626 1 6.54 ? P2 A3P 400 A 1 HETATM 6 O O4P A3P . . . D 3 8.93 1.208 40.016 1 6.54 ? O4P A3P 400 A 1 HETATM 7 O O5P A3P . . . D 3 8.571 0.868 37.569 1 6.54 ? O5P A3P 400 A 1 HETATM 8 O O6P A3P . . . D 3 10.856 0.781 38.515 1 6.54 ? O6P A3P 400 A 1 HETATM 9 O O5' A3P . . . D 3 9.648 2.976 38.366 1 6.54 ? O5' A3P 400 A 1 HETATM 10 C C5' A3P . . . D 3 10.473 3.777 39.184 1 6.54 ? C5' A3P 400 A 1 HETATM 11 C C4' A3P . . . D 3 10.181 5.246 38.902 1 6.54 ? C4' A3P 400 A 1 HETATM 12 O O4' A3P . . . D 3 8.998 5.638 39.67 1 6.54 ? O4' A3P 400 A 1 HETATM 13 C C3' A3P . . . D 3 11.285 6.176 39.351 1 6.54 ? C3' A3P 400 A 1 HETATM 14 O O3' A3P . . . D 3 11.36 7.249 38.387 1 6.54 ? O3' A3P 400 A 1 HETATM 15 C C2' A3P . . . D 3 10.82 6.546 40.756 1 6.54 ? C2' A3P 400 A 1 HETATM 16 O O2' A3P . . . D 3 11.462 7.651 41.399 1 6.54 ? O2' A3P 400 A 1 HETATM 17 C C1' A3P . . . D 3 9.323 6.717 40.53 1 6.54 ? C1' A3P 400 A 1 HETATM 18 N N9 A3P . . . D 3 8.511 6.591 41.74 1 6.54 ? N9 A3P 400 A 1 HETATM 19 C C8 A3P . . . D 3 8.584 5.639 42.764 1 6.54 ? C8 A3P 400 A 1 HETATM 20 N N7 A3P . . . D 3 7.696 5.792 43.728 1 6.54 ? N7 A3P 400 A 1 HETATM 21 C C5 A3P . . . D 3 6.983 6.92 43.323 1 6.54 ? C5 A3P 400 A 1 HETATM 22 C C6 A3P . . . D 3 5.878 7.638 43.899 1 6.54 ? C6 A3P 400 A 1 HETATM 23 N N6 A3P . . . D 3 5.312 7.266 45.063 1 6.54 ? N6 A3P 400 A 1 HETATM 24 N N1 A3P . . . D 3 5.365 8.782 43.212 1 6.54 ? N1 A3P 400 A 1 HETATM 25 C C2 A3P . . . D 3 5.93 9.181 42.017 1 6.54 ? C2 A3P 400 A 1 HETATM 26 N N3 A3P . . . D 3 6.998 8.562 41.374 1 6.54 ? N3 A3P 400 A 1 HETATM 27 C C4 A3P . . . D 3 7.474 7.435 42.083 1 6.54 ? C4 A3P 400 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 599 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #