data_1FML # _model_server_result.job_id 3ismqyfkBsLvgiYhJDcNNA _model_server_result.datetime_utc '2024-11-22 16:37:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 1FML # _exptl.entry_id 1FML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.29 _cell.angle_gamma 90 _cell.entry_id 1FML _cell.length_a 82.053 _cell.length_b 66.612 _cell.length_c 84.904 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FML _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 121 A ASN 121 1_555 C CA CA . A CA 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc2 A OD1 ASP 122 A ASP 122 1_555 C CA CA . A CA 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 B OD1 ASN 121 B ASN 121 1_555 F CA CA . B CA 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 B OD2 ASP 122 B ASP 122 1_555 F CA CA . B CA 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.261 ? metalc ? metalc5 B OD1 ASP 122 B ASP 122 1_555 F CA CA . B CA 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 321 n n C1 C6 RTL sing 322 n n C1 C16 RTL sing 323 n n C1 C17 RTL sing 324 n n C2 C3 RTL sing 325 n n C2 H21 RTL sing 326 n n C2 H22 RTL sing 327 n n C3 C4 RTL sing 328 n n C3 H31 RTL sing 329 n n C3 H32 RTL sing 330 n n C4 C5 RTL sing 331 n n C4 H41 RTL sing 332 n n C4 H42 RTL sing 333 n n C5 C6 RTL doub 334 n n C5 C18 RTL sing 335 n n C6 C7 RTL sing 336 n n C7 C8 RTL doub 337 e n C7 H7 RTL sing 338 n n C8 C9 RTL sing 339 n n C8 H8 RTL sing 340 n n C9 C10 RTL doub 341 e n C9 C19 RTL sing 342 n n C10 C11 RTL sing 343 n n C10 H10 RTL sing 344 n n C11 C12 RTL doub 345 e n C11 H11 RTL sing 346 n n C12 C13 RTL sing 347 n n C12 H12 RTL sing 348 n n C13 C14 RTL doub 349 e n C13 C20 RTL sing 350 n n C14 C15 RTL sing 351 n n C14 H14 RTL sing 352 n n C15 O1 RTL sing 353 n n C15 H151 RTL sing 354 n n C15 H152 RTL sing 355 n n O1 HO1 RTL sing 356 n n C16 H161 RTL sing 357 n n C16 H162 RTL sing 358 n n C16 H163 RTL sing 359 n n C17 H171 RTL sing 360 n n C17 H172 RTL sing 361 n n C17 H173 RTL sing 362 n n C18 H181 RTL sing 363 n n C18 H182 RTL sing 364 n n C18 H183 RTL sing 365 n n C19 H191 RTL sing 366 n n C19 H192 RTL sing 367 n n C19 H193 RTL sing 368 n n C20 H201 RTL sing 369 n n C20 H202 RTL sing 370 n n C20 H203 RTL sing 371 n n # _atom_sites.entry_id 1FML _atom_sites.fract_transf_matrix[1][1] 0.012187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004749 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 450 450 CA CA . D 3 A3P A 1 400 400 A3P A3P . E 4 RTL A 1 401 401 RTL RTL . F 2 CA B 1 550 550 CA CA . G 3 A3P B 1 500 500 A3P A3P . H 4 RTL B 1 501 501 RTL RTL . I 5 HOH A 1 451 2 HOH TIP . I 5 HOH A 2 452 3 HOH TIP . I 5 HOH A 3 453 4 HOH TIP . I 5 HOH A 4 454 5 HOH TIP . I 5 HOH A 5 455 10 HOH TIP . I 5 HOH A 6 456 15 HOH TIP . I 5 HOH A 7 457 16 HOH TIP . I 5 HOH A 8 458 17 HOH TIP . I 5 HOH A 9 459 18 HOH TIP . I 5 HOH A 10 460 19 HOH TIP . I 5 HOH A 11 461 20 HOH TIP . I 5 HOH A 12 462 22 HOH TIP . I 5 HOH A 13 463 24 HOH TIP . I 5 HOH A 14 464 25 HOH TIP . I 5 HOH A 15 465 26 HOH TIP . I 5 HOH A 16 466 28 HOH TIP . I 5 HOH A 17 467 29 HOH TIP . I 5 HOH A 18 468 32 HOH TIP . I 5 HOH A 19 469 36 HOH TIP . I 5 HOH A 20 470 37 HOH TIP . I 5 HOH A 21 471 39 HOH TIP . I 5 HOH A 22 472 40 HOH TIP . I 5 HOH A 23 473 42 HOH TIP . I 5 HOH A 24 474 44 HOH TIP . I 5 HOH A 25 475 46 HOH TIP . I 5 HOH A 26 476 48 HOH TIP . I 5 HOH A 27 477 49 HOH TIP . I 5 HOH A 28 478 52 HOH TIP . I 5 HOH A 29 479 53 HOH TIP . I 5 HOH A 30 480 54 HOH TIP . I 5 HOH A 31 481 55 HOH TIP . I 5 HOH A 32 482 56 HOH TIP . I 5 HOH A 33 483 57 HOH TIP . I 5 HOH A 34 484 59 HOH TIP . I 5 HOH A 35 485 60 HOH TIP . I 5 HOH A 36 486 61 HOH TIP . I 5 HOH A 37 487 64 HOH TIP . I 5 HOH A 38 488 67 HOH TIP . I 5 HOH A 39 489 68 HOH TIP . I 5 HOH A 40 490 69 HOH TIP . I 5 HOH A 41 491 70 HOH TIP . I 5 HOH A 42 492 82 HOH TIP . I 5 HOH A 43 493 85 HOH TIP . I 5 HOH A 44 494 86 HOH TIP . I 5 HOH A 45 495 89 HOH TIP . I 5 HOH A 46 496 91 HOH TIP . J 5 HOH B 1 551 1 HOH TIP . J 5 HOH B 2 552 6 HOH TIP . J 5 HOH B 3 553 7 HOH TIP . J 5 HOH B 4 554 8 HOH TIP . J 5 HOH B 5 555 9 HOH TIP . J 5 HOH B 6 556 11 HOH TIP . J 5 HOH B 7 557 12 HOH TIP . J 5 HOH B 8 558 13 HOH TIP . J 5 HOH B 9 559 14 HOH TIP . J 5 HOH B 10 560 21 HOH TIP . J 5 HOH B 11 561 23 HOH TIP . J 5 HOH B 12 562 27 HOH TIP . J 5 HOH B 13 563 30 HOH TIP . J 5 HOH B 14 564 31 HOH TIP . J 5 HOH B 15 565 33 HOH TIP . J 5 HOH B 16 566 34 HOH TIP . J 5 HOH B 17 567 35 HOH TIP . J 5 HOH B 18 568 38 HOH TIP . J 5 HOH B 19 569 41 HOH TIP . J 5 HOH B 20 570 43 HOH TIP . J 5 HOH B 21 571 45 HOH TIP . J 5 HOH B 22 572 47 HOH TIP . J 5 HOH B 23 573 50 HOH TIP . J 5 HOH B 24 574 51 HOH TIP . J 5 HOH B 25 575 58 HOH TIP . J 5 HOH B 26 576 62 HOH TIP . J 5 HOH B 27 577 63 HOH TIP . J 5 HOH B 28 578 65 HOH TIP . J 5 HOH B 29 579 66 HOH TIP . J 5 HOH B 30 580 71 HOH TIP . J 5 HOH B 31 581 72 HOH TIP . J 5 HOH B 32 582 73 HOH TIP . J 5 HOH B 33 583 74 HOH TIP . J 5 HOH B 34 584 75 HOH TIP . J 5 HOH B 35 585 76 HOH TIP . J 5 HOH B 36 586 77 HOH TIP . J 5 HOH B 37 587 78 HOH TIP . J 5 HOH B 38 588 79 HOH TIP . J 5 HOH B 39 589 80 HOH TIP . J 5 HOH B 40 590 81 HOH TIP . J 5 HOH B 41 591 83 HOH TIP . J 5 HOH B 42 592 84 HOH TIP . J 5 HOH B 43 593 87 HOH TIP . J 5 HOH B 44 594 88 HOH TIP . J 5 HOH B 45 595 90 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . H 4 41.835 8.872 2.978 1 65.62 ? C1 RTL 501 B 1 HETATM 2 C C2 RTL . . . H 4 41.245 9.747 1.83 1 65.62 ? C2 RTL 501 B 1 HETATM 3 C C3 RTL . . . H 4 40.744 11.095 2.32 1 65.62 ? C3 RTL 501 B 1 HETATM 4 C C4 RTL . . . H 4 40.641 11.746 3.694 1 65.62 ? C4 RTL 501 B 1 HETATM 5 C C5 RTL . . . H 4 41.241 10.744 4.672 1 65.62 ? C5 RTL 501 B 1 HETATM 6 C C6 RTL . . . H 4 41.782 9.487 4.422 1 65.62 ? C6 RTL 501 B 1 HETATM 7 C C7 RTL . . . H 4 42.34 8.624 5.488 1 65.62 ? C7 RTL 501 B 1 HETATM 8 C C8 RTL . . . H 4 43.614 8.66 5.959 1 65.62 ? C8 RTL 501 B 1 HETATM 9 C C9 RTL . . . H 4 44.088 7.757 7.006 1 65.62 ? C9 RTL 501 B 1 HETATM 10 C C10 RTL . . . H 4 45.388 7.855 7.415 1 65.62 ? C10 RTL 501 B 1 HETATM 11 C C11 RTL . . . H 4 46.101 7.052 8.431 1 65.62 ? C11 RTL 501 B 1 HETATM 12 C C12 RTL . . . H 4 47.038 6.239 7.843 1 65.62 ? C12 RTL 501 B 1 HETATM 13 C C13 RTL . . . H 4 48.023 5.238 8.307 1 65.62 ? C13 RTL 501 B 1 HETATM 14 C C14 RTL . . . H 4 48.955 4.458 7.669 1 65.62 ? C14 RTL 501 B 1 HETATM 15 C C15 RTL . . . H 4 50.227 5.086 7.252 1 65.62 ? C15 RTL 501 B 1 HETATM 16 O O1 RTL . . . H 4 51.177 5.059 8.238 1 65.62 ? O1 RTL 501 B 1 HETATM 17 C C16 RTL . . . H 4 43.258 8.669 2.441 1 65.62 ? C16 RTL 501 B 1 HETATM 18 C C17 RTL . . . H 4 41.065 7.561 2.816 1 65.62 ? C17 RTL 501 B 1 HETATM 19 C C18 RTL . . . H 4 41.145 11.304 6.092 1 65.62 ? C18 RTL 501 B 1 HETATM 20 C C19 RTL . . . H 4 43.126 6.724 7.609 1 65.62 ? C19 RTL 501 B 1 HETATM 21 C C20 RTL . . . H 4 47.877 5.154 9.84 1 65.62 ? C20 RTL 501 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #