data_1FMO # _model_server_result.job_id pFr8prsdhGVJ1ToZOQzy8w _model_server_result.datetime_utc '2025-02-26 16:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":351}' # _entry.id 1FMO # _exptl.entry_id 1FMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FMO _cell.length_a 73.08 _cell.length_b 78.44 _cell.length_c 80.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale2 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale3 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 1FMO _atom_sites.fract_transf_matrix[1][1] 0.013684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADN E 1 351 351 ADN ADN . D 4 HOH E 1 352 352 HOH HOH . D 4 HOH E 2 353 353 HOH HOH . D 4 HOH E 3 355 355 HOH HOH . D 4 HOH E 4 356 356 HOH HOH . D 4 HOH E 5 357 357 HOH HOH . D 4 HOH E 6 358 358 HOH HOH . D 4 HOH E 7 359 359 HOH HOH . D 4 HOH E 8 361 361 HOH HOH . D 4 HOH E 9 362 362 HOH HOH . D 4 HOH E 10 364 364 HOH HOH . D 4 HOH E 11 365 365 HOH HOH . D 4 HOH E 12 366 366 HOH HOH . D 4 HOH E 13 367 367 HOH HOH . D 4 HOH E 14 369 369 HOH HOH . D 4 HOH E 15 370 370 HOH HOH . D 4 HOH E 16 371 371 HOH HOH . D 4 HOH E 17 372 372 HOH HOH . D 4 HOH E 18 374 374 HOH HOH . D 4 HOH E 19 375 375 HOH HOH . D 4 HOH E 20 376 376 HOH HOH . D 4 HOH E 21 377 377 HOH HOH . D 4 HOH E 22 378 378 HOH HOH . D 4 HOH E 23 379 379 HOH HOH . D 4 HOH E 24 380 380 HOH HOH . D 4 HOH E 25 381 381 HOH HOH . D 4 HOH E 26 382 382 HOH HOH . D 4 HOH E 27 383 383 HOH HOH . D 4 HOH E 28 384 384 HOH HOH . D 4 HOH E 29 385 385 HOH HOH . D 4 HOH E 30 386 386 HOH HOH . D 4 HOH E 31 387 387 HOH HOH . D 4 HOH E 32 388 388 HOH HOH . D 4 HOH E 33 389 389 HOH HOH . D 4 HOH E 34 390 390 HOH HOH . D 4 HOH E 35 391 391 HOH HOH . D 4 HOH E 36 392 392 HOH HOH . D 4 HOH E 37 393 393 HOH HOH . D 4 HOH E 38 394 394 HOH HOH . D 4 HOH E 39 395 395 HOH HOH . D 4 HOH E 40 396 396 HOH HOH . D 4 HOH E 41 397 397 HOH HOH . D 4 HOH E 42 398 398 HOH HOH . D 4 HOH E 43 399 399 HOH HOH . D 4 HOH E 44 400 400 HOH HOH . D 4 HOH E 45 401 401 HOH HOH . D 4 HOH E 46 402 402 HOH HOH . D 4 HOH E 47 403 403 HOH HOH . D 4 HOH E 48 404 404 HOH HOH . D 4 HOH E 49 405 405 HOH HOH . D 4 HOH E 50 406 406 HOH HOH . D 4 HOH E 51 407 407 HOH HOH . D 4 HOH E 52 408 408 HOH HOH . D 4 HOH E 53 409 409 HOH HOH . D 4 HOH E 54 410 410 HOH HOH . D 4 HOH E 55 411 411 HOH HOH . D 4 HOH E 56 412 412 HOH HOH . D 4 HOH E 57 413 413 HOH HOH . D 4 HOH E 58 414 414 HOH HOH . D 4 HOH E 59 415 415 HOH HOH . D 4 HOH E 60 416 416 HOH HOH . D 4 HOH E 61 417 417 HOH HOH . D 4 HOH E 62 419 419 HOH HOH . D 4 HOH E 63 420 420 HOH HOH . D 4 HOH E 64 421 421 HOH HOH . D 4 HOH E 65 422 422 HOH HOH . D 4 HOH E 66 423 423 HOH HOH . D 4 HOH E 67 424 424 HOH HOH . D 4 HOH E 68 425 425 HOH HOH . D 4 HOH E 69 426 426 HOH HOH . D 4 HOH E 70 428 428 HOH HOH . D 4 HOH E 71 429 429 HOH HOH . D 4 HOH E 72 430 430 HOH HOH . D 4 HOH E 73 431 431 HOH HOH . D 4 HOH E 74 432 432 HOH HOH . D 4 HOH E 75 433 433 HOH HOH . D 4 HOH E 76 434 434 HOH HOH . D 4 HOH E 77 435 435 HOH HOH . D 4 HOH E 78 436 436 HOH HOH . D 4 HOH E 79 437 437 HOH HOH . D 4 HOH E 80 438 438 HOH HOH . D 4 HOH E 81 439 439 HOH HOH . D 4 HOH E 82 440 440 HOH HOH . D 4 HOH E 83 441 441 HOH HOH . E 4 HOH I 1 354 354 HOH HOH . E 4 HOH I 2 360 360 HOH HOH . E 4 HOH I 3 363 363 HOH HOH . E 4 HOH I 4 368 368 HOH HOH . E 4 HOH I 5 373 373 HOH HOH . E 4 HOH I 6 418 418 HOH HOH . E 4 HOH I 7 427 427 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . C 3 11.545 8.52 1.545 1 76.63 ? O5' ADN 351 E 1 HETATM 2 C C5' ADN . . . C 3 11.087 9.79 2.052 1 21.76 ? C5' ADN 351 E 1 HETATM 3 C C4' ADN . . . C 3 10.688 9.68 3.523 1 14.36 ? C4' ADN 351 E 1 HETATM 4 O O4' ADN . . . C 3 9.714 10.725 3.81 1 21.86 ? O4' ADN 351 E 1 HETATM 5 C C3' ADN . . . C 3 9.973 8.374 3.903 1 32.86 ? C3' ADN 351 E 1 HETATM 6 O O3' ADN . . . C 3 10.879 7.361 4.304 1 13.32 ? O3' ADN 351 E 1 HETATM 7 C C2' ADN . . . C 3 9.115 8.82 5.059 1 27.57 ? C2' ADN 351 E 1 HETATM 8 O O2' ADN . . . C 3 9.887 9.034 6.232 1 30.21 ? O2' ADN 351 E 1 HETATM 9 C C1' ADN . . . C 3 8.625 10.16 4.5 1 5.76 ? C1' ADN 351 E 1 HETATM 10 N N9 ADN . . . C 3 7.444 10.056 3.646 1 41.9 ? N9 ADN 351 E 1 HETATM 11 C C8 ADN . . . C 3 7.374 9.872 2.291 1 22.21 ? C8 ADN 351 E 1 HETATM 12 N N7 ADN . . . C 3 6.146 9.791 1.843 1 100 ? N7 ADN 351 E 1 HETATM 13 C C5 ADN . . . C 3 5.353 9.952 2.974 1 27.8 ? C5 ADN 351 E 1 HETATM 14 C C6 ADN . . . C 3 3.957 9.957 3.146 1 67.04 ? C6 ADN 351 E 1 HETATM 15 N N6 ADN . . . C 3 3.083 9.826 2.142 1 30.3 ? N6 ADN 351 E 1 HETATM 16 N N1 ADN . . . C 3 3.499 10.104 4.402 1 100 ? N1 ADN 351 E 1 HETATM 17 C C2 ADN . . . C 3 4.376 10.259 5.387 1 44.16 ? C2 ADN 351 E 1 HETATM 18 N N3 ADN . . . C 3 5.705 10.249 5.351 1 56.79 ? N3 ADN 351 E 1 HETATM 19 C C4 ADN . . . C 3 6.136 10.087 4.094 1 70.39 ? C4 ADN 351 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #