data_1FN2 # _model_server_result.job_id 3C-OCfqFBT-sMt7gclkmlQ _model_server_result.datetime_utc '2025-03-03 00:23:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3014}' # _entry.id 1FN2 # _exptl.entry_id 1FN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.431 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FN2 _cell.length_a 28.964 _cell.length_b 52.62 _cell.length_c 40.455 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FN2 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 1 A DG 1002 1_555 C CO CO . A CO 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 C CO CO . A CO 4002 1_555 G O HOH . A HOH 4022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 C CO CO . A CO 4002 1_555 G O HOH . A HOH 4023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 C CO CO . A CO 4002 1_555 G O HOH . A HOH 4026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 C CO CO . A CO 4002 1_555 G O HOH . A HOH 4027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 C CO CO . A CO 4002 1_555 G O HOH . A HOH 4028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc7 B OP2 DG 2 B DG 2002 1_555 F NA NA . B NA 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc8 B OP2 DG 2 B DG 2002 3_655 F NA NA . B NA 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc9 B OP2 DG 2 B DG 2002 4_565 F NA NA . B NA 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 B OP2 DG 2 B DG 2002 2_665 F NA NA . B NA 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc11 B N7 DG 6 B DG 2006 1_555 E CO CO . B CO 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc12 B N7 DG 6 B DG 2006 3_756 E CO CO . B CO 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc13 E CO CO . B CO 4001 1_555 H O HOH . B HOH 4013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc14 E CO CO . B CO 4001 1_555 H O HOH . B HOH 4013 3_756 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc15 E CO CO . B CO 4001 1_555 H O HOH . B HOH 4020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc16 E CO CO . B CO 4001 1_555 H O HOH . B HOH 4020 3_756 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc17 F NA NA . B NA 4003 1_555 H O HOH . B HOH 4029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc18 F NA NA . B NA 4003 1_555 H O HOH . B HOH 4029 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc19 F NA NA . B NA 4003 1_555 H O HOH . B HOH 4029 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc20 F NA NA . B NA 4003 1_555 H O HOH . B HOH 4029 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1002 1_555 B N3 DC 5 B DC 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1002 1_555 B O2 DC 5 B DC 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1002 1_555 B N4 DC 5 B DC 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 2 A DT 1003 1_555 B N1 DA 4 B DA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 2 A DT 1003 1_555 B N6 DA 4 B DA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 3 A DA 1004 1_555 B N3 DT 3 B DT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 3 A DA 1004 1_555 B O4 DT 3 B DT 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 A DC 1005 1_555 B N1 DG 2 B DG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 A DC 1005 1_555 B O6 DG 2 B DG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 A DC 1005 1_555 B N2 DG 2 B DG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H24 N4 O' _chem_comp.formula_weight 336.431 _chem_comp.id 8AD _chem_comp.mon_nstd_flag . _chem_comp.name 9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 8AD doub 1 n y C1 C11 8AD sing 2 n y C1 H1 8AD sing 3 n n C2 C3 8AD sing 4 n y C2 H2 8AD sing 5 n n C3 C4 8AD doub 6 n y C3 H3 8AD sing 7 n n C4 C12 8AD sing 8 n y C4 CD1 8AD sing 9 n n C5 C6 8AD doub 10 n y C5 C14 8AD sing 11 n y C5 H5 8AD sing 12 n n C6 C7 8AD sing 13 n y C6 H6 8AD sing 14 n n C7 C8 8AD doub 15 n y C7 H7 8AD sing 16 n n C8 C13 8AD sing 17 n y C8 H8 8AD sing 18 n n C9 C11 8AD doub 19 n y C9 C13 8AD sing 20 n y C9 N9 8AD sing 21 n n N10 C12 8AD doub 22 n y N10 C14 8AD sing 23 n y C11 C12 8AD sing 24 n y C13 C14 8AD doub 25 n y N9 H9A 8AD sing 26 n n N9 H9B 8AD sing 27 n n CD1 OD1 8AD doub 28 n n CD1 ND1 8AD sing 29 n n ND1 CD2 8AD sing 30 n n ND1 HD1 8AD sing 31 n n ND2 CD5 8AD sing 32 n n ND2 CD7 8AD sing 33 n n ND2 CD8 8AD sing 34 n n CD2 CD3 8AD sing 35 n n CD2 HD21 8AD sing 36 n n CD2 HD22 8AD sing 37 n n CD3 CD4 8AD sing 38 n n CD3 HD31 8AD sing 39 n n CD3 HD32 8AD sing 40 n n CD4 CD5 8AD sing 41 n n CD4 HD41 8AD sing 42 n n CD4 HD42 8AD sing 43 n n CD5 HD51 8AD sing 44 n n CD5 HD52 8AD sing 45 n n CD7 HD71 8AD sing 46 n n CD7 HD72 8AD sing 47 n n CD7 HD73 8AD sing 48 n n CD8 HD81 8AD sing 49 n n CD8 HD82 8AD sing 50 n n CD8 HD83 8AD sing 51 n n # _atom_sites.entry_id 1FN2 _atom_sites.fract_transf_matrix[1][1] 0.034526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CO A 1 4002 4002 CO CO . D 4 8AD A 1 3014 3014 8AD 8AD . E 3 CO B 1 4001 4001 CO CO . F 5 NA B 1 4003 4003 NA NA . G 6 HOH A 1 4007 4007 HOH HOH . G 6 HOH A 2 4008 4008 HOH HOH . G 6 HOH A 3 4014 4014 HOH HOH . G 6 HOH A 4 4017 4017 HOH HOH . G 6 HOH A 5 4021 4021 HOH HOH . G 6 HOH A 6 4022 4022 HOH HOH . G 6 HOH A 7 4023 4023 HOH HOH . G 6 HOH A 8 4025 4025 HOH HOH . G 6 HOH A 9 4026 4026 HOH HOH . G 6 HOH A 10 4027 4027 HOH HOH . G 6 HOH A 11 4028 4028 HOH HOH . G 6 HOH A 12 4032 4032 HOH HOH . H 6 HOH B 1 4004 4004 HOH HOH . H 6 HOH B 2 4005 4005 HOH HOH . H 6 HOH B 3 4006 4006 HOH HOH . H 6 HOH B 4 4009 4009 HOH HOH . H 6 HOH B 5 4010 4010 HOH HOH . H 6 HOH B 6 4011 4011 HOH HOH . H 6 HOH B 7 4012 4012 HOH HOH . H 6 HOH B 8 4013 4013 HOH HOH . H 6 HOH B 9 4015 4015 HOH HOH . H 6 HOH B 10 4016 4016 HOH HOH . H 6 HOH B 11 4018 4018 HOH HOH . H 6 HOH B 12 4019 4019 HOH HOH . H 6 HOH B 13 4020 4020 HOH HOH . H 6 HOH B 14 4024 4024 HOH HOH . H 6 HOH B 15 4029 4029 HOH HOH . H 6 HOH B 16 4030 4030 HOH HOH . H 6 HOH B 17 4031 4031 HOH HOH . H 6 HOH B 18 4033 4033 HOH HOH . H 6 HOH B 19 4034 4034 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8AD . . . D 4 10.086 22.752 10.257 0.5 21.21 ? C1 8AD 3014 A 1 HETATM 2 C C2 8AD . . . D 4 9.061 21.856 10.029 0.5 25.94 ? C2 8AD 3014 A 1 HETATM 3 C C3 8AD . . . D 4 8.771 21.428 8.758 0.5 25.61 ? C3 8AD 3014 A 1 HETATM 4 C C4 8AD . . . D 4 9.53 21.817 7.636 0.5 26.73 ? C4 8AD 3014 A 1 HETATM 5 C C5 8AD . . . D 4 12.943 24.478 5.799 0.5 30.53 ? C5 8AD 3014 A 1 HETATM 6 C C6 8AD . . . D 4 13.935 25.448 5.876 0.5 22.45 ? C6 8AD 3014 A 1 HETATM 7 C C7 8AD . . . D 4 14.387 25.887 7.113 0.5 23.3 ? C7 8AD 3014 A 1 HETATM 8 C C8 8AD . . . D 4 13.708 25.532 8.267 0.5 19.67 ? C8 8AD 3014 A 1 HETATM 9 C C9 8AD . . . D 4 11.971 24.12 9.388 0.5 19.35 ? C9 8AD 3014 A 1 HETATM 10 N N10 8AD . . . D 4 11.244 23.264 6.827 0.5 31.69 ? N10 8AD 3014 A 1 HETATM 11 C C11 8AD . . . D 4 10.844 23.265 9.193 0.5 19.11 ? C11 8AD 3014 A 1 HETATM 12 C C12 8AD . . . D 4 10.563 22.784 7.853 0.5 28.09 ? C12 8AD 3014 A 1 HETATM 13 C C13 8AD . . . D 4 12.646 24.603 8.234 0.5 29.2 ? C13 8AD 3014 A 1 HETATM 14 C C14 8AD . . . D 4 12.246 24.094 6.947 0.5 32.32 ? C14 8AD 3014 A 1 HETATM 15 N N9 8AD . . . D 4 12.262 24.627 10.611 0.5 27.67 ? N9 8AD 3014 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 544 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #