data_1FN3 # _model_server_result.job_id eu9jr1Fc8aSJbsZteWzWyg _model_server_result.datetime_utc '2025-08-01 00:04:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fn3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":142}' # _entry.id 1FN3 # _exptl.entry_id 1FN3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.336 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING NI(II)' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FN3 _cell.length_a 95.52 _cell.length_b 96.138 _cell.length_c 65.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 92 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id NI _struct_conn.ptnr2_label_comp_id HNI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id HNI _struct_conn.ptnr2_auth_seq_id 147 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.069 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 N4 Ni O4' _chem_comp.formula_weight 619.336 _chem_comp.id HNI _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING NI(II)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NI NA HNI sing 150 n n NI NB HNI sing 151 n n NI NC HNI sing 152 n n NI ND HNI sing 153 n n CHA C1A HNI doub 154 n y CHA C4D HNI sing 155 n y CHA HHA HNI sing 156 n n CHB C4A HNI sing 157 n y CHB C1B HNI doub 158 n y CHB HHB HNI sing 159 n n CHC C4B HNI doub 160 n y CHC C1C HNI sing 161 n y CHC HHC HNI sing 162 n n CHD C4C HNI doub 163 n y CHD C1D HNI sing 164 n y CHD HHD HNI sing 165 n n NA C1A HNI sing 166 n y NA C4A HNI doub 167 n y C1A C2A HNI sing 168 n n C2A C3A HNI doub 169 n n C2A CAA HNI sing 170 n n C3A C4A HNI sing 171 n n C3A CMA HNI sing 172 n n CMA HMA1 HNI sing 173 n n CMA HMA2 HNI sing 174 n n CMA HMA3 HNI sing 175 n n CAA CBA HNI sing 176 n n CAA HAA1 HNI sing 177 n n CAA HAA2 HNI sing 178 n n CBA CGA HNI sing 179 n n CBA HBA1 HNI sing 180 n n CBA HBA2 HNI sing 181 n n CGA O1A HNI doub 182 n n CGA O2A HNI sing 183 n n O2A H2A HNI sing 184 n n NB C1B HNI sing 185 n y NB C4B HNI sing 186 n y C1B C2B HNI sing 187 n y C2B C3B HNI doub 188 n y C2B CMB HNI sing 189 n n C3B C4B HNI sing 190 n y C3B CAB HNI sing 191 n n CMB HMB1 HNI sing 192 n n CMB HMB2 HNI sing 193 n n CMB HMB3 HNI sing 194 n n CAB CBB HNI doub 195 n n CAB HAB HNI sing 196 n n CBB HBB1 HNI sing 197 n n CBB HBB2 HNI sing 198 n n NC C1C HNI doub 199 n y NC C4C HNI sing 200 n y C1C C2C HNI sing 201 n n C2C C3C HNI doub 202 n n C2C CMC HNI sing 203 n n C3C C4C HNI sing 204 n n C3C CAC HNI sing 205 n n CMC HMC1 HNI sing 206 n n CMC HMC2 HNI sing 207 n n CMC HMC3 HNI sing 208 n n CAC CBC HNI doub 209 n n CAC HAC HNI sing 210 n n CBC HBC1 HNI sing 211 n n CBC HBC2 HNI sing 212 n n ND C1D HNI sing 213 n y ND C4D HNI sing 214 n y C1D C2D HNI doub 215 n y C2D C3D HNI sing 216 n y C2D CMD HNI sing 217 n n C3D C4D HNI doub 218 n y C3D CAD HNI sing 219 n n CMD HMD1 HNI sing 220 n n CMD HMD2 HNI sing 221 n n CMD HMD3 HNI sing 222 n n CAD CBD HNI sing 223 n n CAD HAD1 HNI sing 224 n n CAD HAD2 HNI sing 225 n n CBD CGD HNI sing 226 n n CBD HBD1 HNI sing 227 n n CBD HBD2 HNI sing 228 n n CGD O1D HNI doub 229 n n CGD O2D HNI sing 230 n n O2D H2D HNI sing 231 n n # _atom_sites.entry_id 1FN3 _atom_sites.fract_transf_matrix[1][1] 0.010469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HNI A 1 142 142 HNI HNI . F 3 HNI B 1 147 147 HNI HNI . G 3 HNI C 1 142 142 HNI HNI . H 3 HNI D 1 147 147 HNI HNI . I 4 HOH A 1 143 1 HOH HOH . I 4 HOH A 2 144 2 HOH HOH . I 4 HOH A 3 145 3 HOH HOH . I 4 HOH A 4 146 4 HOH HOH . I 4 HOH A 5 147 6 HOH HOH . I 4 HOH A 6 148 7 HOH HOH . I 4 HOH A 7 149 8 HOH HOH . I 4 HOH A 8 150 9 HOH HOH . I 4 HOH A 9 151 12 HOH HOH . I 4 HOH A 10 152 13 HOH HOH . I 4 HOH A 11 153 14 HOH HOH . I 4 HOH A 12 154 16 HOH HOH . I 4 HOH A 13 155 17 HOH HOH . I 4 HOH A 14 156 18 HOH HOH . I 4 HOH A 15 157 22 HOH HOH . I 4 HOH A 16 158 23 HOH HOH . I 4 HOH A 17 159 24 HOH HOH . J 4 HOH B 1 148 5 HOH HOH . J 4 HOH B 2 149 10 HOH HOH . J 4 HOH B 3 150 25 HOH HOH . J 4 HOH B 4 151 29 HOH HOH . J 4 HOH B 5 152 34 HOH HOH . J 4 HOH B 6 153 35 HOH HOH . J 4 HOH B 7 154 36 HOH HOH . K 4 HOH C 1 143 15 HOH HOH . K 4 HOH C 2 144 26 HOH HOH . K 4 HOH C 3 145 27 HOH HOH . K 4 HOH C 4 146 28 HOH HOH . K 4 HOH C 5 147 30 HOH HOH . K 4 HOH C 6 148 31 HOH HOH . K 4 HOH C 7 149 32 HOH HOH . K 4 HOH C 8 150 37 HOH HOH . K 4 HOH C 9 151 38 HOH HOH . L 4 HOH D 1 148 11 HOH HOH . L 4 HOH D 2 149 19 HOH HOH . L 4 HOH D 3 150 20 HOH HOH . L 4 HOH D 4 151 21 HOH HOH . L 4 HOH D 5 152 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 NI NI HNI . . . E 3 39.43 40.177 15.095 1 2 ? NI HNI 142 A 1 HETATM 2 C CHA HNI . . . E 3 41.065 42.588 16.586 1 11.63 ? CHA HNI 142 A 1 HETATM 3 C CHB HNI . . . E 3 41.871 39.904 12.706 1 10.77 ? CHB HNI 142 A 1 HETATM 4 C CHC HNI . . . E 3 37.717 37.648 13.469 1 10.23 ? CHC HNI 142 A 1 HETATM 5 C CHD HNI . . . E 3 36.902 40.356 17.372 1 5.05 ? CHD HNI 142 A 1 HETATM 6 N NA HNI . . . E 3 41.018 40.991 14.673 1 2 ? NA HNI 142 A 1 HETATM 7 C C1A HNI . . . E 3 41.608 42.023 15.423 1 6.92 ? C1A HNI 142 A 1 HETATM 8 C C2A HNI . . . E 3 42.883 42.497 14.893 1 5.71 ? C2A HNI 142 A 1 HETATM 9 C C3A HNI . . . E 3 43.083 41.725 13.799 1 10.04 ? C3A HNI 142 A 1 HETATM 10 C C4A HNI . . . E 3 41.985 40.779 13.727 1 8.55 ? C4A HNI 142 A 1 HETATM 11 C CMA HNI . . . E 3 44.27 41.729 12.851 1 10.99 ? CMA HNI 142 A 1 HETATM 12 C CAA HNI . . . E 3 43.726 43.686 15.402 1 2 ? CAA HNI 142 A 1 HETATM 13 C CBA HNI . . . E 3 45.187 43.558 15.751 1 2 ? CBA HNI 142 A 1 HETATM 14 C CGA HNI . . . E 3 45.674 44.419 16.896 1 3.34 ? CGA HNI 142 A 1 HETATM 15 O O1A HNI . . . E 3 44.958 45.352 17.27 1 5.86 ? O1A HNI 142 A 1 HETATM 16 O O2A HNI . . . E 3 46.752 44.181 17.429 1 9.05 ? O2A HNI 142 A 1 HETATM 17 N NB HNI . . . E 3 39.75 39.042 13.493 1 11.77 ? NB HNI 142 A 1 HETATM 18 C C1B HNI . . . E 3 40.79 39.083 12.603 1 12.55 ? C1B HNI 142 A 1 HETATM 19 C C2B HNI . . . E 3 40.696 38.084 11.559 1 14.63 ? C2B HNI 142 A 1 HETATM 20 C C3B HNI . . . E 3 39.497 37.459 11.769 1 13.65 ? C3B HNI 142 A 1 HETATM 21 C C4B HNI . . . E 3 38.949 38.068 12.97 1 14.3 ? C4B HNI 142 A 1 HETATM 22 C CMB HNI . . . E 3 41.754 37.931 10.463 1 13.48 ? CMB HNI 142 A 1 HETATM 23 C CAB HNI . . . E 3 38.704 36.348 11.103 1 15.1 ? CAB HNI 142 A 1 HETATM 24 C CBB HNI . . . E 3 38.535 36.063 9.77 1 19.24 ? CBB HNI 142 A 1 HETATM 25 N NC HNI . . . E 3 37.708 39.195 15.347 1 4.77 ? NC HNI 142 A 1 HETATM 26 C C1C HNI . . . E 3 37.138 38.193 14.597 1 4.21 ? C1C HNI 142 A 1 HETATM 27 C C2C HNI . . . E 3 35.859 37.781 15.132 1 2.35 ? C2C HNI 142 A 1 HETATM 28 C C3C HNI . . . E 3 35.638 38.53 16.215 1 3.51 ? C3C HNI 142 A 1 HETATM 29 C C4C HNI . . . E 3 36.776 39.429 16.338 1 4.7 ? C4C HNI 142 A 1 HETATM 30 C CMC HNI . . . E 3 35.03 36.692 14.496 1 4.01 ? CMC HNI 142 A 1 HETATM 31 C CAC HNI . . . E 3 34.483 38.565 17.156 1 2.56 ? CAC HNI 142 A 1 HETATM 32 C CBC HNI . . . E 3 33.36 39.289 16.869 1 2 ? CBC HNI 142 A 1 HETATM 33 N ND HNI . . . E 3 39.067 41.237 16.641 1 7.74 ? ND HNI 142 A 1 HETATM 34 C C1D HNI . . . E 3 37.982 41.211 17.518 1 3.03 ? C1D HNI 142 A 1 HETATM 35 C C2D HNI . . . E 3 38.108 42.211 18.573 1 2 ? C2D HNI 142 A 1 HETATM 36 C C3D HNI . . . E 3 39.283 42.819 18.359 1 2.71 ? C3D HNI 142 A 1 HETATM 37 C C4D HNI . . . E 3 39.84 42.252 17.152 1 8.98 ? C4D HNI 142 A 1 HETATM 38 C CMD HNI . . . E 3 37.145 42.48 19.717 1 2 ? CMD HNI 142 A 1 HETATM 39 C CAD HNI . . . E 3 39.912 43.928 19.177 1 2 ? CAD HNI 142 A 1 HETATM 40 C CBD HNI . . . E 3 39.437 45.293 18.732 1 2.25 ? CBD HNI 142 A 1 HETATM 41 C CGD HNI . . . E 3 40.104 46.382 19.54 1 8.44 ? CGD HNI 142 A 1 HETATM 42 O O1D HNI . . . E 3 40.306 47.471 18.992 1 13.66 ? O1D HNI 142 A 1 HETATM 43 O O2D HNI . . . E 3 40.422 46.119 20.698 1 12.63 ? O2D HNI 142 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #