data_1FN3 # _model_server_result.job_id yz46PXKC8aWm8FgMJRlE3Q _model_server_result.datetime_utc '2024-11-04 23:09:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1fn3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":147}' # _entry.id 1FN3 # _exptl.entry_id 1FN3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.336 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING NI(II)' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1FN3 _cell.length_a 95.52 _cell.length_b 96.138 _cell.length_c 65.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 92 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id NI _struct_conn.ptnr2_label_comp_id HNI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id HNI _struct_conn.ptnr2_auth_seq_id 147 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.069 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 N4 Ni O4' _chem_comp.formula_weight 619.336 _chem_comp.id HNI _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING NI(II)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NI NA HNI sing 150 n n NI NB HNI sing 151 n n NI NC HNI sing 152 n n NI ND HNI sing 153 n n CHA C1A HNI doub 154 n y CHA C4D HNI sing 155 n y CHA HHA HNI sing 156 n n CHB C4A HNI sing 157 n y CHB C1B HNI doub 158 n y CHB HHB HNI sing 159 n n CHC C4B HNI doub 160 n y CHC C1C HNI sing 161 n y CHC HHC HNI sing 162 n n CHD C4C HNI doub 163 n y CHD C1D HNI sing 164 n y CHD HHD HNI sing 165 n n NA C1A HNI sing 166 n y NA C4A HNI doub 167 n y C1A C2A HNI sing 168 n n C2A C3A HNI doub 169 n n C2A CAA HNI sing 170 n n C3A C4A HNI sing 171 n n C3A CMA HNI sing 172 n n CMA HMA1 HNI sing 173 n n CMA HMA2 HNI sing 174 n n CMA HMA3 HNI sing 175 n n CAA CBA HNI sing 176 n n CAA HAA1 HNI sing 177 n n CAA HAA2 HNI sing 178 n n CBA CGA HNI sing 179 n n CBA HBA1 HNI sing 180 n n CBA HBA2 HNI sing 181 n n CGA O1A HNI doub 182 n n CGA O2A HNI sing 183 n n O2A H2A HNI sing 184 n n NB C1B HNI sing 185 n y NB C4B HNI sing 186 n y C1B C2B HNI sing 187 n y C2B C3B HNI doub 188 n y C2B CMB HNI sing 189 n n C3B C4B HNI sing 190 n y C3B CAB HNI sing 191 n n CMB HMB1 HNI sing 192 n n CMB HMB2 HNI sing 193 n n CMB HMB3 HNI sing 194 n n CAB CBB HNI doub 195 n n CAB HAB HNI sing 196 n n CBB HBB1 HNI sing 197 n n CBB HBB2 HNI sing 198 n n NC C1C HNI doub 199 n y NC C4C HNI sing 200 n y C1C C2C HNI sing 201 n n C2C C3C HNI doub 202 n n C2C CMC HNI sing 203 n n C3C C4C HNI sing 204 n n C3C CAC HNI sing 205 n n CMC HMC1 HNI sing 206 n n CMC HMC2 HNI sing 207 n n CMC HMC3 HNI sing 208 n n CAC CBC HNI doub 209 n n CAC HAC HNI sing 210 n n CBC HBC1 HNI sing 211 n n CBC HBC2 HNI sing 212 n n ND C1D HNI sing 213 n y ND C4D HNI sing 214 n y C1D C2D HNI doub 215 n y C2D C3D HNI sing 216 n y C2D CMD HNI sing 217 n n C3D C4D HNI doub 218 n y C3D CAD HNI sing 219 n n CMD HMD1 HNI sing 220 n n CMD HMD2 HNI sing 221 n n CMD HMD3 HNI sing 222 n n CAD CBD HNI sing 223 n n CAD HAD1 HNI sing 224 n n CAD HAD2 HNI sing 225 n n CBD CGD HNI sing 226 n n CBD HBD1 HNI sing 227 n n CBD HBD2 HNI sing 228 n n CGD O1D HNI doub 229 n n CGD O2D HNI sing 230 n n O2D H2D HNI sing 231 n n # _atom_sites.entry_id 1FN3 _atom_sites.fract_transf_matrix[1][1] 0.010469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HNI A 1 142 142 HNI HNI . F 3 HNI B 1 147 147 HNI HNI . G 3 HNI C 1 142 142 HNI HNI . H 3 HNI D 1 147 147 HNI HNI . I 4 HOH A 1 143 1 HOH HOH . I 4 HOH A 2 144 2 HOH HOH . I 4 HOH A 3 145 3 HOH HOH . I 4 HOH A 4 146 4 HOH HOH . I 4 HOH A 5 147 6 HOH HOH . I 4 HOH A 6 148 7 HOH HOH . I 4 HOH A 7 149 8 HOH HOH . I 4 HOH A 8 150 9 HOH HOH . I 4 HOH A 9 151 12 HOH HOH . I 4 HOH A 10 152 13 HOH HOH . I 4 HOH A 11 153 14 HOH HOH . I 4 HOH A 12 154 16 HOH HOH . I 4 HOH A 13 155 17 HOH HOH . I 4 HOH A 14 156 18 HOH HOH . I 4 HOH A 15 157 22 HOH HOH . I 4 HOH A 16 158 23 HOH HOH . I 4 HOH A 17 159 24 HOH HOH . J 4 HOH B 1 148 5 HOH HOH . J 4 HOH B 2 149 10 HOH HOH . J 4 HOH B 3 150 25 HOH HOH . J 4 HOH B 4 151 29 HOH HOH . J 4 HOH B 5 152 34 HOH HOH . J 4 HOH B 6 153 35 HOH HOH . J 4 HOH B 7 154 36 HOH HOH . K 4 HOH C 1 143 15 HOH HOH . K 4 HOH C 2 144 26 HOH HOH . K 4 HOH C 3 145 27 HOH HOH . K 4 HOH C 4 146 28 HOH HOH . K 4 HOH C 5 147 30 HOH HOH . K 4 HOH C 6 148 31 HOH HOH . K 4 HOH C 7 149 32 HOH HOH . K 4 HOH C 8 150 37 HOH HOH . K 4 HOH C 9 151 38 HOH HOH . L 4 HOH D 1 148 11 HOH HOH . L 4 HOH D 2 149 19 HOH HOH . L 4 HOH D 3 150 20 HOH HOH . L 4 HOH D 4 151 21 HOH HOH . L 4 HOH D 5 152 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 NI NI HNI . . . H 3 26.115 34.681 33.884 1 2 ? NI HNI 147 D 1 HETATM 2 C CHA HNI . . . H 3 26.546 37.351 35.677 1 10.38 ? CHA HNI 147 D 1 HETATM 3 C CHB HNI . . . H 3 23.022 34.144 35.222 1 8.52 ? CHB HNI 147 D 1 HETATM 4 C CHC HNI . . . H 3 25.699 31.786 32.071 1 6.11 ? CHC HNI 147 D 1 HETATM 5 C CHD HNI . . . H 3 29.202 34.995 32.549 1 6.7 ? CHD HNI 147 D 1 HETATM 6 N NA HNI . . . H 3 25.017 35.478 35.11 1 7.23 ? NA HNI 147 D 1 HETATM 7 C C1A HNI . . . H 3 25.351 36.647 35.819 1 10.07 ? C1A HNI 147 D 1 HETATM 8 C C2A HNI . . . H 3 24.337 37.076 36.773 1 9.49 ? C2A HNI 147 D 1 HETATM 9 C C3A HNI . . . H 3 23.358 36.16 36.635 1 9.94 ? C3A HNI 147 D 1 HETATM 10 C C4A HNI . . . H 3 23.779 35.208 35.609 1 10.66 ? C4A HNI 147 D 1 HETATM 11 C CMA HNI . . . H 3 22.045 36.119 37.414 1 8.49 ? CMA HNI 147 D 1 HETATM 12 C CAA HNI . . . H 3 24.404 38.256 37.784 1 15.16 ? CAA HNI 147 D 1 HETATM 13 C CBA HNI . . . H 3 23.583 39.529 37.655 1 24.64 ? CBA HNI 147 D 1 HETATM 14 C CGA HNI . . . H 3 24.259 40.832 38.093 1 23.35 ? CGA HNI 147 D 1 HETATM 15 O O1A HNI . . . H 3 25.475 40.814 38.309 1 18.82 ? O1A HNI 147 D 1 HETATM 16 O O2A HNI . . . H 3 23.598 41.87 38.222 1 25.27 ? O2A HNI 147 D 1 HETATM 17 N NB HNI . . . H 3 24.676 33.329 33.681 1 2 ? NB HNI 147 D 1 HETATM 18 C C1B HNI . . . H 3 23.479 33.26 34.288 1 2.15 ? C1B HNI 147 D 1 HETATM 19 C C2B HNI . . . H 3 22.687 32.131 33.854 1 6.72 ? C2B HNI 147 D 1 HETATM 20 C C3B HNI . . . H 3 23.454 31.467 32.957 1 6.06 ? C3B HNI 147 D 1 HETATM 21 C C4B HNI . . . H 3 24.675 32.219 32.892 1 2.91 ? C4B HNI 147 D 1 HETATM 22 C CMB HNI . . . H 3 21.283 31.847 34.375 1 13.65 ? CMB HNI 147 D 1 HETATM 23 C CAB HNI . . . H 3 23.314 30.214 32.105 1 4.25 ? CAB HNI 147 D 1 HETATM 24 C CBB HNI . . . H 3 22.379 29.918 31.148 1 2 ? CBB HNI 147 D 1 HETATM 25 N NC HNI . . . H 3 27.189 33.62 32.604 1 3.03 ? NC HNI 147 D 1 HETATM 26 C C1C HNI . . . H 3 26.889 32.462 31.951 1 4.93 ? C1C HNI 147 D 1 HETATM 27 C C2C HNI . . . H 3 27.981 32.001 31.143 1 8.82 ? C2C HNI 147 D 1 HETATM 28 C C3C HNI . . . H 3 28.962 32.925 31.278 1 9.15 ? C3C HNI 147 D 1 HETATM 29 C C4C HNI . . . H 3 28.458 33.904 32.192 1 7.4 ? C4C HNI 147 D 1 HETATM 30 C CMC HNI . . . H 3 27.865 30.722 30.36 1 12.02 ? CMC HNI 147 D 1 HETATM 31 C CAC HNI . . . H 3 30.343 33.063 30.727 1 8.98 ? CAC HNI 147 D 1 HETATM 32 C CBC HNI . . . H 3 30.981 32.067 30.093 1 5.69 ? CBC HNI 147 D 1 HETATM 33 N ND HNI . . . H 3 27.547 35.913 34.055 1 2 ? ND HNI 147 D 1 HETATM 34 C C1D HNI . . . H 3 28.787 35.934 33.437 1 3.26 ? C1D HNI 147 D 1 HETATM 35 C C2D HNI . . . H 3 29.586 37.072 33.852 1 5.21 ? C2D HNI 147 D 1 HETATM 36 C C3D HNI . . . H 3 28.852 37.718 34.741 1 6.02 ? C3D HNI 147 D 1 HETATM 37 C C4D HNI . . . H 3 27.589 37.025 34.839 1 5.15 ? C4D HNI 147 D 1 HETATM 38 C CMD HNI . . . H 3 30.981 37.465 33.416 1 2.22 ? CMD HNI 147 D 1 HETATM 39 C CAD HNI . . . H 3 29.293 38.909 35.57 1 12.72 ? CAD HNI 147 D 1 HETATM 40 C CBD HNI . . . H 3 29.944 38.232 36.797 1 22.2 ? CBD HNI 147 D 1 HETATM 41 C CGD HNI . . . H 3 30.499 39.126 37.881 1 27.58 ? CGD HNI 147 D 1 HETATM 42 O O1D HNI . . . H 3 30.319 38.772 39.052 1 29.42 ? O1D HNI 147 D 1 HETATM 43 O O2D HNI . . . H 3 31.11 40.13 37.548 1 33.98 ? O2D HNI 147 D 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #